TCONS_00059275 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059275
Unique NameTCONS_00059275
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1213

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059275 ID=TCONS_00059275|Name=TCONS_00059275|organism=Clytia hemisphaerica|type=transcript|length=1213bp
ATGTTGTATTTGTTGTAGACAGAGGAGTGGTTGTCGTAGTTGTGGTAGGC
GGAGGCGTGGTTGTTGTAGTTGTTGTTGTTGTAGTAGGCGGCGGAGTGGT
TGTCGTAGTTGTTGTAGGCGGAGGCGTGGTTGTTGTAGTTGTAGTAGGCG
GTGAGGTGGTTGTTGTAGTTGTTGTTGTAGTAGTAGGCGGAGGGGTGGTT
GTCGTAGTTGTGGTAGGCGGAGGcgtggttgttgtagttgtagtAGGCGG
AGGCGTGGTTGTCGTAGTTGTAGTAGGCGGAGGCGTGGTTGTCGTAGTTG
TAGTAGGCGGAGGCGTGGTTGTCGTAGTTGTAGTAGGCGGAGGCGTGGTT
GTCGTAGTTGTAGTAGGCGGAGGCGTGGTTGTCGTAGTTGTAGTAGGCGG
AGGCGTGGTTGTCGTAGTTGTAGTAGGCGGGGGCGTGGTTGTAGTAGTAG
TTGTAGTAGGCAGAGGggtggttgttgtagttgtgGTAGGCGGAGGcgtg
gttgttgtagttgtagtAGGCGGAGGcgtggttgttgtagttgtgGTAAG
CGGAGGcgtggttgttgtagttgtagtAGGCGGAGGCGTGGTTGTCGTAG
TTGTTGTAGGCGGAGGCGTAGTTGTAGTAGTTGTGGTAGGCGGAGGcgtg
gttgttgtagttgtgGTAGGCGGGGAAGTGTTTGTTGTAGTTGTTTTAGG
CTTAAGCGTTGTTTTTGCAGTTGTTGTAGGCAGAGGCGTGGTTGTTGTAC
GCTGAAACTTGGTTGTTGTACTTTTAGTAGGCCAGTTCCAGGTTGTTGTG
GTTGTGGTAAGCTGTGGAGGTGTAGTTGTGGTAGGTGGAAATGTGGTAGG
TGGAAATGTGGTAGGTGGAAATGTTGCTGCTGTTATtgtcttttttgtac
tttgaagCTCTTGCATATCATTTCTTTGTTCTGCTGTCTGTCGCCCAGTT
CGTGTCTCATTCTGTAAAAAGGTAAGTTAAACTCTTTACAGTACCGCCAA
CTTGCAAAGGACAGAAAAAGTTGCAGATTGTTTGTATGAAATCAATtcct
ttgtaaaatatttacatTAAACACAATGGCCACATTTTGGTTTGCCTGCC
CCCTTTGTTTATCTAAAAATGCCgttcaaaatatctcaaaaacttATTCT
TTGGGGTTAGAATACCTTAACtaactgacctttatataccctggaccaag
tttctcaatcccg
Run BLAST on NCBI

transcript from alignment at scaffold_323:7496..8801+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059275 ID=TCONS_00059275|Name=TCONS_00059275|organism=Clytia hemisphaerica|type=transcript|length=1306bp|location=Sequence derived from alignment at scaffold_323:7496..8801+ (Clytia hemisphaerica)
ATGTTGTATTTGTTGTAGACAGAGGAGTGGTTGTCGTAGTTGTGGTAGGC
GGAGGCGTGGTTGTTGTAGTTGTTGTTGTTGTAGTAGGCGGCGGAGTGGT
TGTCGTAGTTGTTGTAGGCGGAGGCGTGGTTGTTGTAGTTGTAGTAGGCG
GTGAGGTGGTTGTTGTAGTTGTTGTTGTAGTAGGCGGAGGGGTGGTTGTC
GTAGTTGTGGTAAGCGGAGGCGTGGTTGTTGTAgttgtagtAGGCGGAGA
ggtggttgttgtagttgttgttgTAGTAGGCGGAGGGGTGGTTGTCGTAG
TTGTGGTAGGCGGAGGcgtggttgttgtagttgtagtAGGCGGAGGCGTG
GTTGTCGTAGTTGTAGTAGGCGGAGGCGTGGTTGTCGTAGTTGTAGTAGG
CGGAGGCGTGGTTGTCGTAGTTGTAGTAGGCGGAGGCGTGGTTGTCGTAG
TTGTAGTAGGCGGAGGCGTGGTTGTCGTAGTTGTAGTAGGCGGAGGCGTG
GTTGTCGTAGTTGTAGTAGGCGGGGGCGTGGTTGTAGTAGTAGTTGTAGT
AGGCAGAGGggtggttgttgtagttgtgGTAGGCGGAGGcgtggttgttg
tagttgtagtAGGCGGAGGcgtggttgttgtagttgtgGTAAGCGGAGGc
gtggttgttgtagttgtagtAGGCGGAGGCGTGGTTGTCGTAGTTGTTGT
AGGCGGAGGCGTAGTTGTAGTAGTTGTGGTAGGCGGAGGcgtggttgttg
tagttgtgGTAGGCGGGGAAGTGTTTGTTGTAGTTGTTTTAGGCTTAAGC
GTTGTTTTTGCAGTTGTTGTAGGCAGAGGCGTGGTTGTTGTACGCTGAAA
CTTGGTTGTTGTACTTTTAGTAGGCCAGTTCCAGGTTGTTGTGGTTGTGG
TAAGCTGTGGAGGTGTAGTTGTGGTAGGTGGAAATGTGGTAGGTGGAAAT
GTGGTAGGTGGAAATGTTGCTGCTGTTATtgtcttttttgtactttgaag
CTCTTGCATATCATTTCTTTGTTCTGCTGTCTGTCGCCCAGTTCGTGTCT
CATTCTGTAAAAAGGTAAGTTAAACTCTTTACAGTACCGCCAACTTGCAA
AGGACAGAAAAAGTTGCAGATTGTTTGTATGAAATCAATtcctttgtaaa
atatttacatTAAACACAATGGCCACATTTTGGTTTGCCTGCCCCCTTTG
TTTATCTAAAAATGCCgttcaaaatatctcaaaaacttATTCTTTGGGGT
TAGAATACCTTAACtaactgacctttatataccctggaccaagtttctca
atcccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037322XLOC_037322Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059275-exon-scaffold_323-1491911889:7496..7678TCONS_00059275-exon-scaffold_323-1491911889:7496..7678Clytia hemisphaericaexon
TCONS_00059275-exon-scaffold_323-1510915933:7496..7678TCONS_00059275-exon-scaffold_323-1510915933:7496..7678Clytia hemisphaericaexon
TCONS_00059275-exon-scaffold_323-1575043694:7496..7678TCONS_00059275-exon-scaffold_323-1575043694:7496..7678Clytia hemisphaericaexon
TCONS_00059275-exon-scaffold_323-1491911889:7772..8801TCONS_00059275-exon-scaffold_323-1491911889:7772..8801Clytia hemisphaericaexon
TCONS_00059275-exon-scaffold_323-1510915933:7772..8801TCONS_00059275-exon-scaffold_323-1510915933:7772..8801Clytia hemisphaericaexon
TCONS_00059275-exon-scaffold_323-1575043694:7772..8801TCONS_00059275-exon-scaffold_323-1575043694:7772..8801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_323supercontigscaffold_323:7496..8801 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.364754	0.568937	0.209461	0	2.31078	0.575739	0	0	0.10996	0.140068	0.158721	0	0	0.199222	0.126216	0.293577	0.295802	0.556481	0.870594	0.28027	0	0.131635	0.674709	0.28554	3.13668	0.844286	0.347198	0.113486	0.668348	0.830987
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059275 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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