TCONS_00059256 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059256
Unique NameTCONS_00059256
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059256 ID=TCONS_00059256|Name=TCONS_00059256|organism=Clytia hemisphaerica|type=transcript|length=1310bp
taaaatttcaaacgaCATTTATTCGAACGACAAGAAATTATTCAAcaaaa
ttcttagaaaatatTATGTTTTATGAAAGTGTCTTGTAGTATAGTTTAAA
TCgttcagaaaaatctttttcctcTGAATGAGCCATGGATACCTACTGAA
AACTCTACAAACAAGATGAATACCATAGCCATGAGGAAATCTTTTTATTT
CCTTCCGTCCTCAATGTTTTGACTTGGTTTCGACTCTTAAAGTTATGCTA
TCCTCTGAAGTTGTTCAAAGACGTAAAAAAGACCATTGGCCAAAGAAGAA
AAAGGACGTGACAAGAACTTTCAGTTTGAATTTGAACTTCAACGATGAAG
GTGAAAAATGGTTGGAGAAGGAGAGCTTACATAGTGCAGTGGAAGTTCAA
AAGTTGAAGAATTCAAGTGGTTCTCTCTCTTCTATATGGAAAAACAATAC
CAATAAACCGAAANTCAAGTGGTTCTCTTTCTTCTATATGGAAAAACAAT
ACCAATAAACCGAAACTGAGACAAGACAGTACAATCTCTGTGGAACCAGA
AATTATCAACGGCCCCGAAGAAGAAGATGACGAGCCATTACTGTCAGGGA
GCGGTGAATTCGAACGATCATATTCAGAAGGTGAACTCGATAATTGGAAA
GAAATTCTTGATAAGTGGACAGACTTTAACACGAAACCAAGCAAATTGAC
ACAATGTATACGCAGGGGTAATCTACCGAATGCAGTGCGTGGTGATGTAT
GGCAAAGACTCAGTGGTAATGAAAAAGATGACGAAATTAATAGAAGCTAC
GAAGTCCTTTTTAATAAGGATTCGCAACAAGAACAGGTCATACTATGGGA
TGTTACGAGGACTTTCCCAGCACACGAACGTTTCAGAGAAGCCAATGGAA
AAGGACAAAATGCACTGTACCACATAAGCAAAGCATATTCAAATTATGAT
GAAGAAGTTGCTTATTGTCAAGGACTATCGTTCATTATTGCAACATTCTT
ACTTCACGTTGAAGAGAAAGAAGCTTATTCACTATTGGTCAAAATGATGT
ATGATTATGGTTTACGTGATTTGTTCAACAATGGATTCGCCTCTTTACAT
CAATATTTCTTCGTACTCGACCGCATTCTGGAGGTTTGTACTCttcatat
tcatgatatgtaccattgcaatgtcttccacggacccaacagctgattgg
ttgaaagtgacgtattgactgattttacgtcatttacaaccaatcatctg
ttgggtccgtggaagacattgcaatggtgcttATCATGAATTCTATTAGT
Tatacggttt
Run BLAST on NCBI

transcript from alignment at scaffold_320:241192..246995-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059256 ID=TCONS_00059256|Name=TCONS_00059256|organism=Clytia hemisphaerica|type=transcript|length=5804bp|location=Sequence derived from alignment at scaffold_320:241192..246995- (Clytia hemisphaerica)
TAAAATTTCAAACGACATTTATTCGAACGACAAGAAATTATTCAACAAAA
TTCTTAGAAAATATTATGTTTTATGAAAGTGTCTTGTAGTATAGTTTAAA
TCGTTCAGAAAAATCTTTTTCCTCTGAATGAGCCATGGATACCTACTGAA
AACTCTACAAACAAGATGAATACCATAGCCATGAGGAAATCTTTTTATTT
CCTTCCGTCCTCAATGTTTTGACTTGGTTTCGACTCTTAAAGTTATGCTA
TCCTCTGAAGTTGTTCAAAGACGTAAAAAAGACCATTGGCCAAAGAAGAA
AAAGGACGTGACAAGAACTTTCAGTTTGAATTTGGTATATACATACAAAT
TAGATTATTTACTCGGGATACTGATAGATAATTTGTTCTGACTGCTAGTA
CAAAAAGCGAACAGCTAAAGTAATATCATATTAATTCACTAGTTTTGTAT
ACGCAATCATTGCTAAAATGCAAGTATCATGGTACGTGTAGAAAATGTCT
GCAGAAGCTTTTATAGGTTTCAATGAACAACCTAAAAGTTCACAATGAGA
GACGTAAAGTAGCTTGTTTTTTTTCCGTATTGTGATTTACTCTTTGGTTT
CGTGGATTGCAAAAGTTCTTTTCCATGGCGCCTTTTCTCAGGTGGACTTT
AGTTATCAAAATTAAGTTTGCAGTCTTAAGTTTAAAGGCCATCATTCAAC
GTATACCCCACGGTATATCCTACTATTTGCTTACAAGAACAGCCCTGGGA
GCCCGTGCTGTGGCAGCGTAAATTTTGAAAATTTCTTTTATAAAAAAAAA
GTGTCTTTATAAGGTTGGTGCAAATGCGAATATTCCATTCAACATTTCAA
AGTTCATTAATGGACAAATGTTGGATGGCAAACGCAACAAACGGCATTGA
ACACTTTAATTAGAATAACCACATGTATACAACATAAAATGCTGTGTCGG
CAAAATTTTGGAGTCATTTGCGCTAGCTTTTATATGAAGGAGTATGAAAA
ATATAGTTGTAATGTCTCACCATCCATATCATTTCTCTACCATAGAACTT
CAACGATGAAGGTGAAAAATGGTTGGAGAAGGAGAGCTTACATAGTGCAG
TGGAAGTTCAAAAGTTGAAGAATTCAAGTGGTTCTCTCTCTTCTATATGG
AAAAACAATACCAATAAACCGAAANTCAAGTGGTTCTCTTTCTTCTATAT
GGAAAAACAATACCAATAAACCGAAACTGAGACAAGACAGTACAATCTCT
GTGGAACCAGAAATTATCAACGGTGTGTACTCTTATTTCCTGGTCTCCTT
CAGTATAAAGTATAAATTTAGGGTGTTTTATGGGTCTTCGAAAACATTTG
AAGCCTGGGAGTTGATGAAAGATTCAGTGGAGACTTGATTGTTGATTGAA
CCTTTTTAGAAGATTCGTATATTCTTTGCCGGACTTTTTCCTATCAAACT
CTGCTATAACTTCATAAAATCTCAGTCAATATAAGTGAAATGACAAAAAG
CATAAATGCCCTAAAGCACTATTTCAAGTAATTGACAAAATAGGAAAATT
CTTTAAAACATCCCCTATAATATGACAATAATCACTGTATAGACAACTCC
TTACTCTAATATAATATAGTTTCGTTTTGCACTCGTTCCCAGGCCCCGAA
GAAGAAGATGACGAGCCATTACTGTCAGGGAGCGGTGAATTCGAACGATC
ATATTCAGAAGGTGAACTCGATAATTGGAAAGAAATTCTTGATAAGTGGA
CAGACTTTAACACGAAACCAAGCAAATTGACACAATGTATACGCAGGGTA
AGTTTCTTGATTGTTTAGCGGTAAAAGTGTGGTGGATATCTTGCACGAAA
AGGCTAAACCTTTTTTTCCTAAGACTACTTTGCATGCATGTTGTTTCTTT
ATCGGATTCAAGAGAATTGTTCTATGTTATTGTTTACAATGTAATGTTTT
CAAATGGATAGAATTTCGGACAGATTGCTTTCGGATCGTTTTCATCTTAT
TTTTTATCCATGTGAAATTGTTTTGATGGTCACGCTTTTCTCTATTTTGT
TATACTCTCTCTTGGATGTTTTACATCAAAACCGCTTCGTACCTCTGCAC
ACCAACACCACCAGCTTTGTATCTGTAATGGTACATTGTGTAGGTTTTCA
GATTTAAGCCCCCCGACATTCTGTGGCCGTCAGTTGGGCGATTGATACCT
GAGGTCTTTCAACGGAGTTGTGCTATGTCCATGTTTCCATAAAATAATTT
TGCTGATAAATTTGTTTAAATTTTTGTATTACTGTGTAGAACTATCTTTC
TCTCGCAAAAGGTAATCAAAGAATGATCAAAACGATGTGAGGTATTTTTA
GCAATCTCAATACTTTTTCTCGTTTTTACTTTGCCAGGGTAATCTACCGA
ATGCAGTGCGTGGTGATGTATGGCAAAGACTCAGTGGTAATGAAAAAGAT
GACGAAATTAATAGAAGCTACGAAGTCCTTTTTAATAAGGTAAAAGCTCT
TCTATTTCCCCTACCTCCCTGCCTCTCAAATAATTGCTAATCGTTGATAG
ATAACTTCTCGTAGTTCGAACGACTCTCTCTTTAGAAAAGAAAGAGGTTA
TTTAACCAAGGGATTGTACCCCCTTTCGCATTCTTGTTTTTTTTGATTGT
CTACCTGGGTTTTACTTCTGCCTCCATTATTCTTGTATCATTTTGCTTTT
GTAACCGTACATATCTATCCTTGGTTTACTAGTTGCCCAAGGCCTTCCGA
GGATCACGTTATAAACCAATTTCATGCAATATTTAAATTTAAATCTATTT
GAGCCCTTCTAGAACATTCGCAGGTGTCATTTTATGGTTGTTGTGTTTGT
GGCTATGCCTCGTTTCCATAGTGTCCTCCCCCTCTGGATTCAGGGGGGAA
TGGGTTTTGAGGTCAAAAGGACGTATAGGGGGAAAGAATTTTTTTTGAAG
CCAGGGTGGGGAAAACGAGCAGGGGGGATGGAAAATTTTCATTCTAGGCA
TGGGCATATGTTCTTCTTTCATTTATTTCAACCAGCAATATTACGGTTTA
AAAACAACCATCCTTTCCATTTATTCTTGAATTAGAACTACCTTAGGGAA
AACAATAAGCGTTAAATTCATCAAATTACAGCTTTTTATGCTTGAGGGGG
GGGGGGGACAGAGAAATTTTTGGAGGCAGGGGGGGGGAAAATGAGGGGGA
ATGGAAAATTTTCATTCTAGGCATGGGGGAAAGAGGCCCTGAAGGACACT
ATGGTTTCACAAATAGCCCAAGGAGCTGCCGGGGATGGTATTTAATAATC
GATTCAATACTATTTCCATAAACTAAAATAATCAAGTATTATTCTGCAGG
ATTCGCAACAAGAACAGGTCATACTATGGGATGTTACGAGGACTTTCCCA
GCACACGAACGTTTCAGAGAAGCCAATGGAAAAGGACAAAATGCACTGTA
CCACATAAGCAAAGTGAGTAACTGATTCCCTGTCATTGCCTTGCTTGTAA
GAGAGATACAGTATGCCTTTCAAACACAAGTTTATAGAAGTTTATCATGA
TCTACTTCGAAGGGATCGATGGAGCACACGGTTTGAACGTTTTGGTTTTA
GCCGTTACTTAATACTTGATTTCAACAACTACTAACAAAATTTAGCCTGG
ATACACTCAATCAGCCTCCTTGTGACTCTGGGGTTGATGGGTAAAGTTGT
ATTTATCCACAAGGGTCCAGATTCTAGAATGCTCTGAAATGTTTTGACAA
TCGAAATGATTCATCCTATAGTTAAGTACTTTAGAAGGTTCCTAGACCAA
CCTTGAGTGATTTGCTATTGGGTGGGAGATTTCTCTCCTAGAAACTCTTT
TCACCAAACAAAATTCCGCTCACGTAAAATTGAGAGATGAGAAAACTGCG
TCTTGAAATAATATTATTGTGTCATTCGTTGCATATACTTGGCATTGCCA
TGTTAAAAATATGTATTCTTGGCTTAAAATACGTCAACATAGAGCTTAAG
AATTGGCAAACGGCCATGTTGCTTAACACTCGTCGACCTATTTCATTGCA
AAAAACAACAAAACAGCTATGCCGTCATCATGCTATTACGGGCTTTTGCA
AAAACGGTAGCACGCTCAGTTCTCTAAAATAAACATTTGGATTTAGCGAT
TTTACATCTCTTCTTTCCGTGTTTGTTTTCCGATTTGAAACAATGTTGTG
AACTTTGGTAATGATCGAAAAAGTCTGTTAGAGGCACGTTTAATCCCTCG
GTAAACAAAAACTTCCTATTTTTGTCAGATGTTTATCTTATAATGTGATC
TATCCACTCCGCCTTTCAAAGCAAATTTGTTGACTTTTTCCTCACTCACA
TGTTCGGCGTGATCGATTTCTCCGTTTCTCTCTCAAAACAAACAATGGAT
GGAATTACATCCCAAAATGCCAATCATCTAAACATGATCTATGCAAAATG
AAAATTTTATGTGTTTGCTTGAAAAATTATAGGGATCATTGCTATTCTCT
CTCATTGCGTTCAATTTTAGGTCACGTTTCGGTCAAATGGCCAGTTCTCT
TAGAAAACTTCTTTGACAAATTACCTTCTGTCCAAACAGATTTATTTGGA
AGATAATTATCCATTAGGATAATGAAAGCAAAACCATCAAGCTCCCCACT
GCAAATCTCGAATATTTCCTACCTTAGATTCACGCCACATAAAGTGTTAA
AAGCCAAAGAATGAATGACATGGATCGGTATATCATGCCGAGAATCTTTC
CCTCATGTTTTACATATTAAGGCTTGGGGACACGAGAAGTTTTTTTCGCG
TTGGTGCAATGCAACATGCTCTATCCTACCAACACAAGAAAAAAAGTCCG
TGTCCCATGGTTTCATTTTTTGTTTCGTGGAACAAAAGGTGAGGAAAATA
CCCAAAAGACACGCTGATTTTGTCCCTGGCGCAATGGAGCAAAATTGATT
ACAAAAGTGAGATTTCACTTTTTCTGGTAGAAAGAAAAATGGGGTGGAAA
CACGAGAAAGCGTTTCAGGTTGGTGGGATGGAGCATGCTGTATTACACCA
ACGCGAAAAAAACTTCTCGTGTCCCCAAGCCTTTACCCTACAAACAATTT
ATTAAATATAAAACTTCTTCAACTTTTCATTTTAGGCATATTCAAATTAT
GATGAAGAAGTTGCTTATTGTCAAGGACTATCGTTCATTATTGCAACATT
CTTACTTCACGTACGAAAAAATTCCATCCATCATTCCTCATACATCAGAG
TCCTATTCCTTCTAAACCTTAACCGATTTATCAATTAAATGCTATCGATT
TTATTTACCCGTCAATACTGAGTTTGGCTGAACAGGATCTATGTAAAAAA
CCTTCCTGATTTTCTTTGCCCTTTTCACTAAACTAATCTATTAAAAGCTT
TGAAGCTATAAATGCTTGAAGCTGCATTGCGCTTTACTAGCATTTTCTTC
CAATATCAAAAATTTGTTATTGCTTTTTTCGGTATCTTTTTTTACTCTTA
GGTTGAAGAGAAAGAAGCTTATTCACTATTGGTCAAAATGATGTATGATT
ATGGTTTACGTGATTTGTTCAACAATGGATTCGCCTCTTTACATCAATAT
TTCTTCGTACTCGACCGCATTCTGGAGGTTTGTACTCTTCATATTCATGA
TATGTACCATTGCAATGTCTTCCACGGACCCAACAGCTGATTGGTTGAAA
GTGACGTATTGACTGATTTTACGTCATTTACAACCAATCATCTGTTGGGT
CCGTGGAAGACATTGCAATGGTGCTTATCATGAATTCTATTAGTTATACG
GTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037311XLOC_037311Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059256-exon-scaffold_320-1575043694:246662..246995TCONS_00059256-exon-scaffold_320-1575043694:246662..246995Clytia hemisphaericaexon
TCONS_00059256-exon-scaffold_320-1575043694:245724..245950TCONS_00059256-exon-scaffold_320-1575043694:245724..245950Clytia hemisphaericaexon
TCONS_00059256-exon-scaffold_320-1575043694:245199..245353TCONS_00059256-exon-scaffold_320-1575043694:245199..245353Clytia hemisphaericaexon
TCONS_00059256-exon-scaffold_320-1575043694:244507..244608TCONS_00059256-exon-scaffold_320-1575043694:244507..244608Clytia hemisphaericaexon
TCONS_00059256-exon-scaffold_320-1575043694:243533..243646TCONS_00059256-exon-scaffold_320-1575043694:243533..243646Clytia hemisphaericaexon
TCONS_00059256-exon-scaffold_320-1575043694:241786..241860TCONS_00059256-exon-scaffold_320-1575043694:241786..241860Clytia hemisphaericaexon
TCONS_00059256-exon-scaffold_320-1575043694:241192..241494TCONS_00059256-exon-scaffold_320-1575043694:241192..241494Clytia hemisphaericaexon
TCONS_00059256-exon-scaffold_320-1510915933:246662..246995TCONS_00059256-exon-scaffold_320-1510915933:246662..246995Clytia hemisphaericaexon
TCONS_00059256-exon-scaffold_320-1510915933:245724..245950TCONS_00059256-exon-scaffold_320-1510915933:245724..245950Clytia hemisphaericaexon
TCONS_00059256-exon-scaffold_320-1510915933:245199..245353TCONS_00059256-exon-scaffold_320-1510915933:245199..245353Clytia hemisphaericaexon
TCONS_00059256-exon-scaffold_320-1510915933:244507..244608TCONS_00059256-exon-scaffold_320-1510915933:244507..244608Clytia hemisphaericaexon
TCONS_00059256-exon-scaffold_320-1510915933:243533..243646TCONS_00059256-exon-scaffold_320-1510915933:243533..243646Clytia hemisphaericaexon
TCONS_00059256-exon-scaffold_320-1510915933:241786..241860TCONS_00059256-exon-scaffold_320-1510915933:241786..241860Clytia hemisphaericaexon
TCONS_00059256-exon-scaffold_320-1510915933:241192..241494TCONS_00059256-exon-scaffold_320-1510915933:241192..241494Clytia hemisphaericaexon
TCONS_00059256-exon-scaffold_320-1491911889:246662..246995TCONS_00059256-exon-scaffold_320-1491911889:246662..246995Clytia hemisphaericaexon
TCONS_00059256-exon-scaffold_320-1491911889:245724..245950TCONS_00059256-exon-scaffold_320-1491911889:245724..245950Clytia hemisphaericaexon
TCONS_00059256-exon-scaffold_320-1491911889:245199..245353TCONS_00059256-exon-scaffold_320-1491911889:245199..245353Clytia hemisphaericaexon
TCONS_00059256-exon-scaffold_320-1491911889:244507..244608TCONS_00059256-exon-scaffold_320-1491911889:244507..244608Clytia hemisphaericaexon
TCONS_00059256-exon-scaffold_320-1491911889:243533..243646TCONS_00059256-exon-scaffold_320-1491911889:243533..243646Clytia hemisphaericaexon
TCONS_00059256-exon-scaffold_320-1491911889:241786..241860TCONS_00059256-exon-scaffold_320-1491911889:241786..241860Clytia hemisphaericaexon
TCONS_00059256-exon-scaffold_320-1491911889:241192..241494TCONS_00059256-exon-scaffold_320-1491911889:241192..241494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_320supercontigscaffold_320:241192..246995 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.158073	0.315286	1.07909	1.31901	0.414527	0	0	0.836182	0.108838	0.275562	0	0.675853	0.0886442	0	0.078141	0.306233	4.56493	7.07161	0.1542	0	10.4299	8.7781	1.81523	1.45034	5.45424	3.68175	12.8524	5.48662	0.382287	1.31125
Blast
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BLAST of TCONS_00059256 vs. Swiss-Prot (Human)
Match: RBGP1 (Rab GTPase-activating protein 1 OS=Homo sapiens GN=RABGAP1 PE=1 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 5.179e-53
Identity = 89/194 (45.88%), Postives = 132/194 (68.04%), Query Frame = 3 
Query:  588 LLSGSGEFERSYSEGELDNWKEILDKW-TDFNTKPSKLTQCIRRGNLPNAVRGDVWQRLSGNEKDDEINRSYEVLFNKDSQQEQVILWDVTRTFPAHERFREANGKGQNALYHISKAYSNYDEEVAYCQGLSFIIATFLLHVEEKEAYSLLVKMMYDYGLRDLFNNGFASLHQYFFVLDRILEVCTLHIHDMYH 1166
            LLSGSG+  +  +E  L+ W E+L KW  + N +P +L+  +R G +P A+RG+VWQ L+G   +D +   Y +L  K+S Q+  I  D+ RTFPAH+ F++  G GQ++LY I KAYS YDEE+ YCQG SF+ A  LLH+ E++A+S+LVK+M+DYGLR+LF   F  LH  F+ L+R+++    +I D+Y+
Sbjct:  522 LLSGSGDVSKECAEKILETWGELLSKWHLNLNVRPKQLSSLVRNG-VPEALRGEVWQLLAGCHNNDHLVEKYRILITKESPQDSAITRDINRTFPAHDYFKDTGGDGQDSLYKICKAYSVYDEEIGYCQGQSFLAAVLLLHMPEEQAFSVLVKIMFDYGLRELFKQNFEDLHCKFYQLERLMQE---YIPDLYN 711
The following BLAST results are available for this feature:
BLAST of TCONS_00059256 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBGP15.179e-5345.88Rab GTPase-activating protein 1 OS=Homo sapiens GN... [more]
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