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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059243 ID=TCONS_00059243|Name=TCONS_00059243|organism=Clytia hemisphaerica|type=transcript|length=1822bp
TAAAGATTGTCTATGGAAGGAAGACTCCTGCCGAGTGAACAATTATTGTG
TTGGCAAAGGAGATGCACATCCATTAGATTGGTGCAAAGTCTGTAGTGGA
GAAAATGCTTTTGAACCAAGATATGACAACTTGGCACCTGTGTTTCGACC
AACAGAACCTATCAAAGTTTTTAAAGACCAAGAAATGAGCTTCGTTATCC
CCGTATTTGATCCTGAACAGAAGAAGATGAAATATGAGTTGATAGAACCA
CCATCGCCACCACCGGGTATGGAGATCTCCAATGGTGGAGTACTGACATG
GACACccaaagaagaaaacaaaacgtTCACAGTATGGATCAAAGTTACTG
ACATTTGTGGCAACAGTTCGTATTCTACATATGATTTTGAGGTTGTTAAT
TGTCCTTGTCAAGCTTTCAATGGTGCAGAATGCCAAAGAAGTGATAATGG
AACTATTAGCTGTGTTTGCCCTGCTGGATGTACCGGAAAAAAGTACGAAA
AAAGGCTTGATCACTAATAGTTTGCTCTTAATAACTCGAAAGTAAAAGTT
CATGAGTTTGCTTAGTTTGAATGGACCTTATCagagttttcttgattttt
tctaaaacagcgatgcattgtgggattgtttcaggagtattacaatagaa
atctcttaggaattcctcgagggaattctattgtaataccccggaaacaa
tcccacaatgcattaccgttaaagaaaatcaaaatacccgaacttgattt
cttttatttcactgaagattTGAAGCTTTGAGTATGAAAATAACTGAAAc
cgtttttttaatcaaactagTGGAACTGTTAAATTTTTATATTCACGGCA
CCTGTCTGCAAGGGTAACCCTGCTTACAAAGacttacagtcaactctctc
taattcgaacctctattattcgaatttttctgtaattcgaactaaaagaT
TGGTCTCTAAAGCTgtaaagtggtttaaattactctctattattagaatc
tttctctaattcgatcaaAGTTTTtgatcccttgaagatcgatttagaga
gaatcaactgtacttataaagtcaaaaattcttcaACTATTAGCTTTGTG
CGAAAAACTTCTCTTTACACACCACCGTGCCACAGATCCGGTGGACCCCC
AGCCTCACATGTAAATAATACCCTAGGATTTAAACCCCACTGGATAATTA
AAGTATGAtttatccccattcgaaattggGCGGCAAAAACTACACTCCAA
AACCAAAACCACCCCCGTTTTTCTTTTTGAGCTAGAAACNTAAACAAAAA
AGTAAGGAAAAActgtctttttgattttctaaaagtcCATTTTGGCTTAA
agtttagttaaaataatttgGTAGTCCAGTTGGcaacgacgttgtttcaa
cgtctatctaacgttatatagacgttatgaacattagataaacgttgaaa
caacgttgtgtgtcagctggtaGGCCActcttagaccatgttcagacgtt
acggtttcgttTCGCTCCGGTTTGGTATTTGTTACGGATAGAAAGTGTTC
ATACTCATTTCGGAACATTTTGGAACAACAAAACGGAGCAGTTctgttcc
gatgaaaatagtagAGCAAAactgtttctaactgttttgctttgtaacgt
cttcttttttgacgttttcaattttgacgttCAAGGAACGAATCGTCCAT
ACAGGATTCGAAGCTAATCAATTcctatttaagggctctgaccatagtcc
aaaaatagattttggtatttgaacataaaagttatatttcaggttcctta
acacttttaacaaagaattgcc Run BLAST on NCBI transcript from alignment at scaffold_320:137462..142985- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059243 ID=TCONS_00059243|Name=TCONS_00059243|organism=Clytia hemisphaerica|type=transcript|length=5524bp|location=Sequence derived from alignment at scaffold_320:137462..142985- (Clytia hemisphaerica)
TAAAGATTGTCTATGGAAGGTAAGATACACTTTTTTTTATAAGAACCAGT
AAAATTGTTCTGAGGCTCAGTTGTTCTTATTTTTTTGGCACGTTGAGCCT
CAAATTGTTCTTCTCCTGTTCTTATTTATAAGTTGTAATTGAGGTATTTT
AGGCGTTATACTCAATTTTTACTACTTAGGCGAGACTAATTTAATTTGTT
GTTCTACGGACAGATCATTAGAAAAGTATGGGTCGGTCGGTCGGCAAAAT
AAGAATAAATTTTTCATTTATCAGGGTTGGTAAGGTACCGATAAAATTTT
CAAAAAAGTATCTGGATCAAAAATTCACTTTGTTTTTATCTTCGATCATA
ATAAAATTTTAGTGTATGGAATGCTTTTTATGATTTATCAATTTCTTGAA
TTAATTTTCAGTTTTATTCAAGTTTAATTCTTACAAATAACTAGTGTGTA
AAATAGATTGTAGTGGAAATTCGATATTATAATTTTTTTGATTTTAGGAA
AAATAGGGTCGGTTGGGCCCGTAGAACAACAAATTAAATTGGTCTCGCCT
TATACGCCTTGAATTTGAGTAGTTTCGGGCTCAGTATTGTTCTTAAATTG
TTCTTAATTGTTGGCGATTTTAAGCCTCATTGTGCTTATAAAATTGTTCT
TATATAAAAAGTGTACGTGTTTTGATAAGAACGAATTATATAAAAACTAT
ATAGTCGATGCAGTACTCTATGAAAAATGCGTCGGTATTTTGTTCTCGGG
AAACCGATTCCAACGCATTCAATAGTTATCAAAAACATCTTGGGAGCCTA
CTAGAGTGGTTCTAAAAGGCTTAAAAATCTTCCTTTGATTTTTATAGAAG
CTCATAGCACGTACAAAAGTGACTTAGTCCGAATTACAGTAGGTTGAATA
TCAATTGAAAAATTCAAAAGATCGTCAATACTTGTGACCCCGCACGCTTC
TACCTTCAATATCATCCCAGCTGACCCGCGACGTTGTTTCAACAGTAATC
TAATGTTCACAACGTCCATATAGCGTTAGATGAACGTTGAAAAAACGTCG
TGTGCCAGCTGGGTATAGGGTGTAAAATTAGAAATGAGTTAACTTCATCA
TCGTCGAATTTTAGGAAGACTCCTGCCGAGTGAACAATTATTGTGTTGGC
AAAGGAGATGCACATCCATTAGATTGGTGCAAAGTCTGTAGTGGAGAAAA
TGCTTTTGAACCAAGATATGGTAAGAGAATTTATATTTGGTTGTGTATCA
TTAAAATGCATTGGGACAATGTTTAGTTTTCTAATGTACCTAACATACGA
GAGACGAGCACCCCGATCTAGAATATGTCTTTCCGTAGAAACCTTCCCAA
GACTCGCATCAGTGCAGTTCGGGGCTCACTAGAGGGCTCAAAACACTAAG
CCTTGCATAAACACTTGTAGAGAGCAGAGAGAGCGAAGTAGCCGAGCCTG
ACAGAGTCTCTCTAGAGCGCTCTAGAAACTGAATTCACGCTCAGCGCTAT
ATCTATCCACAAATAAGTGTTTCGTCCTTCCTAACCAGTTTCTTAAAAAT
CTCTAATCAACCAAGATTAGAAGCTTACAATGCATGAGAAACGTATACAG
CATTTCATTCATATCCAATGCAGTGGCGTTGTGGCAGGGGGGGGGGGGGG
GGGGCCCCCCCCCGGGGGCTTTTTTTAGGGGGGGGGGGGAGGGAGGGGGG
GGGGGGGGGCCCCCCCCCGGGGGCTTTTTTTAGGGGGGGGGGGGAGGGAG
GGGGGGGGGGGGGGCCCCCCCCCGGGGGCTTTTTTTAGGGGGGGGGGGGA
GGGAGGGGGGGGGGGGGGGCCCCCCCCCGGGGGTTTTTTTAAGGGGGGCC
GAAGAGCAAGGGGCGCCAAAAGAGATTTTCTAAACGCCCCAATCTTAAAA
ATCATACTTTATGCGCCTTAAATTGCGTCCAGGACCAATTTTACTGAGAT
AATTTTGAATTTTTTTTTTCGCTCGCTTCGCTCGCAATAAAGTTAATTGG
TAACTTCTTTGCAATCTACGTATTTTACAAGTTTTTTTGTACAATATAGC
ATAATTATTAAATGAAAATCTAACTGCACCCCAAGACTAATTTGCTGACA
ACAATATTGAAATCATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TTAAGTTTCTTTTCACTCTAGCAAGCGTCAAATTTGTCTATTTTTATTTA
GTGATTTAGGGTATCTTGGCAGTCGATTTTTAAAATTTTCTAGTCGGCAC
CAACCATGGTGGGGCCTGTTTTTCCCTTTTTCCATTCATCAAAGATATAT
CTACTCTTCTCCATTAAATATTTCCTTCCTCATTATGCCTAGGCAAATGA
ATTAGTAAAAGTTTAGAAACTGGTGGGTGAGGGGGCACCACTTTCGAAAA
TTGGAAGGGGGCGCCATTTAAAAAAAATTGACTTTGGCCCCTCCAGAAAG
ATTTCCCCACAACGCCACTGATCCAATGATTGGCTGTAAGGCGTGAAGCA
GACTATAATGTTTTAGATTTTTTTTTAAATATAATTTTTAATTTGATAAT
CTTATACAGTACATTTTCTCACTCGTCAGCCATGCATGCATGTGTGAAGT
TCGGTATAGGGCGTTACAGTCCTGTCAACTGCCTTTGCCCATTGAGGATT
CAACTATTATTAAAAAAAACTCACTTTTTTTAATGTCGAAATTTCAAATA
ATCATCAAAAACAGCGAGCCAACTTTTCTCTTGACACTTACCTTCTTTAC
ACGTAAAAATACCAAAAAATGCAACTGTGTTCATCAAAACTCGTTACAGA
ATTAAAAAAAAAAGCTATTCCCATGTGGAATAATATTTTTCGAATAGCTG
AAAAAAATTTTAGAAATCTAAAAGAGAGGTTTTGATATTGTATGTGTGCT
ATGTGAGAAAACTTTTGAAAAAATAAATCTAAAATAAAAAAAATTTAAAA
ATTTAAAAAATAAATCACCATTCCTCGACTACATGGTTGCTCAAAGAATT
TGGGTCTGCATCGAGTTGGCTTGTGTTGGAAATGTTCATGACTTGCAAAT
AAGATGGAGAAACTGTTGGCAAAATACAAATAAGAAAAAAAACAAAATAT
TTTTTTCATTTTGTCTTATTTATACCGTGATTAATAAATTAATGAACAAA
AAGTTTAAATCCTGAAGCTTACAATATCTCGACAAAACTGTATACTTTTA
TTGGTGCACCCGGTATTTCGGTATTTCATGTTTGTACCTGTACCAAGCTA
ACTGAAAATTTAAGAAGATTAAGAATGACTCTCGCTTGGAAATGAAGTTA
ACAGTTACAATTACCAGCATAATACCTTTCTTTCCCTTGCCTATTTCAGA
CAACTTGGCACCTGTGTTTCGACCAACAGAACCTATCAAAGTTTTTAAAG
ACCAAGAAATGAGCTTCGTTATCCCCGTATTTGATCCTGAACAGAAGAAG
ATGAAATATGAGTTGATAGAACCACCATCGCCACCACCGGGTATGGAGAT
CTCCAATGGTGGAGTACTGACATGGACACCCAAAGAAGAAAACAAAACGT
TCACAGGTAACCTTCAGTGTGCCAAATAGGTCCTTTTTACGCAGGACCTT
ATGACGGTTTTCCGTCTCTGTTTGGTACAAAAGGAGACTTTATCATCTCC
AAATTCAACAAAAATTTTCATTGCCAAGTTCATTAACATCTTGAGACAAA
AAACTTTGACCATTGAATTAAATGTCTTAAAGCCAACAGTAACATTATTT
TACTTCCCAAAACCAGCGAGTTTATTTCAAGCAAATATTCTTATAACATT
AAATGATAATATACTTGACTCATCTGAAAAGTTATATGGACCTCATTTAC
AAATCCTAACTAAAATTTCCTCTTTTTTTCCCAGTATGGATCAAAGTTAC
TGACATTTGTGGCAACAGTTCGTATTCTACATATGATTTTGAGGTTGTTA
ATTGTCCTTGTCAAGCTTTCAATGGTGCAGAATGCCAAAGAAGTGATAAT
GGAACTATTAGCTGTGTTTGCCCTGCTGGATGTACCGGAAAAAAGTACGA
AAAAAGGCTTGATCACTAATAGTTTGCTCTTAATAACTCGAAAGTAAAAG
TTCATGAGTTTGCTTAGTTTGAATGGACCTTATCAGAGTTTTCTTGATTT
TTTCTAAAACAGCGATGCATTGTGGGATTGTTTCAGGAGTATTACAATAG
AAATCTCTTAGGAATTCCTCGAGGGAATTCTATTGTAATACCCCGGAAAC
AATCCCACAATGCATTACCGTTAAAGAAAATCAAAATACCCGAACTTGAT
TTCTTTTATTTCACTGAAGATTTGAAGCTTTGAGTATGAAAATAACTGAA
ACCGTTTTTTTAATCAAACTAGTGGAACTGTTAAATTTTTATATTCACGG
CACCTGTCTGCAAGGGTAACCCTGCTTACAAAGACTTACAGTCAACTCTC
TCTAATTCGAACCTCTATTATTCGAATTTTTCTGTAATTCGAACTAAAAG
ATTGGTCTCTAAAGCTGTAAAGTGGTTTAAATTACTCTCTATTATTAGAA
TCTTTCTCTAATTCGATCAAAGTTTTTGATCCCTTGAAGATCGATTTAGA
GAGAATCAACTGTACTTATAAAGTCAAAAATTCTTCAACTATTAGCTTTG
TGCGAAAAACTTCTCTTTACACACCACCGTGCCACAGATCCGGTGGACCC
CCAGCCTCACATGTAAATAATACCCTAGGATTTAAACCCCACTGGATAAT
TAAAGTATGATTTATCCCCATTCGAAATTGGGCGGCAAAAACTACACTCC
AAAACCAAAACCACCCCCGTTTTTCTTTTTGAGCTAGAAACNTAAACAAA
AAAGTAAGGAAAAACTGTCTTTTTGATTTTCTAAAAGTCCATTTTGGCTT
AAAGTTTAGTTAAAATAATTTGGTAGTCCAGTTGGCAACGACGTTGTTTC
AACGTCTATCTAACGTTATATAGACGTTATGAACATTAGATAAACGTTGA
AACAACGTTGTGTGTCAGCTGGTAGGCCACTCTTAGACCATGTTCAGACG
TTACGGTTTCGTTTCGCTCCGGTTTGGTATTTGTTACGGATAGAAAGTGT
TCATACTCATTTCGGAACATTTTGGAACAACAAAACGGAGCAGTTCTGTT
CCGATGAAAATAGTAGAGCAAAACTGTTTCTAACTGTTTTGCTTTGTAAC
GTCTTCTTTTTTGACGTTTTCAATTTTGACGTTCAAGGAACGAATCGTCC
ATACAGGATTCGAAGCTAATCAATTCCTATTTAAGGGCTCTGACCATAGT
CCAAAAATAGATTTTGGTATTTGAACATAAAAGTTATATTTCAGGTTCCT
TAACACTTTTAACAAAGAATTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059243-exon-scaffold_320-1575043694:142967..142985 | TCONS_00059243-exon-scaffold_320-1575043694:142967..142985 | Clytia hemisphaerica | exon |
| TCONS_00059243-exon-scaffold_320-1575043694:141766..141871 | TCONS_00059243-exon-scaffold_320-1575043694:141766..141871 | Clytia hemisphaerica | exon |
| TCONS_00059243-exon-scaffold_320-1575043694:139280..139486 | TCONS_00059243-exon-scaffold_320-1575043694:139280..139486 | Clytia hemisphaerica | exon |
| TCONS_00059243-exon-scaffold_320-1575043694:137462..138951 | TCONS_00059243-exon-scaffold_320-1575043694:137462..138951 | Clytia hemisphaerica | exon |
| TCONS_00059243-exon-scaffold_320-1510915933:142967..142985 | TCONS_00059243-exon-scaffold_320-1510915933:142967..142985 | Clytia hemisphaerica | exon |
| TCONS_00059243-exon-scaffold_320-1510915933:141766..141871 | TCONS_00059243-exon-scaffold_320-1510915933:141766..141871 | Clytia hemisphaerica | exon |
| TCONS_00059243-exon-scaffold_320-1510915933:139280..139486 | TCONS_00059243-exon-scaffold_320-1510915933:139280..139486 | Clytia hemisphaerica | exon |
| TCONS_00059243-exon-scaffold_320-1510915933:137462..138951 | TCONS_00059243-exon-scaffold_320-1510915933:137462..138951 | Clytia hemisphaerica | exon |
| TCONS_00059243-exon-scaffold_320-1491911889:142967..142985 | TCONS_00059243-exon-scaffold_320-1491911889:142967..142985 | Clytia hemisphaerica | exon |
| TCONS_00059243-exon-scaffold_320-1491911889:141766..141871 | TCONS_00059243-exon-scaffold_320-1491911889:141766..141871 | Clytia hemisphaerica | exon |
| TCONS_00059243-exon-scaffold_320-1491911889:139280..139486 | TCONS_00059243-exon-scaffold_320-1491911889:139280..139486 | Clytia hemisphaerica | exon |
| TCONS_00059243-exon-scaffold_320-1491911889:137462..138951 | TCONS_00059243-exon-scaffold_320-1491911889:137462..138951 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_320 | supercontig | scaffold_320:137462..142985 - |
Blast
The following BLAST results are available for this feature:
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