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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059239 ID=TCONS_00059239|Name=TCONS_00059239|organism=Clytia hemisphaerica|type=transcript|length=2094bp
atTCACACATCCCCTACGGTGTTTAGGTTCTGCAAATACTGGATGGATAG
AGATGCATaagttttaacattttcaatatttcaactTTCAATAGCATCTC
CAATGAAACTCAACtgctatcaaaacaaaatggaaatTGGTTTAGAATTC
GATCACCTATCACGTCACTCCTTACCTTATATCGTCAAATTTCATGGTGA
TAATAACTGCCCAACATTAAATGCATCTTCAGCATCTTCAATATACGATG
GACGTCTATGGATGAATGCAAATTACAGTGAATGTGGTATCAAAGCTTTT
GAGAGCGGAAACAAACTAGTGTTCAAACAAATCGTTGAAGTTGTGTacgg
aaaacaaatgaaatcttTAGATGTTTATCGACATTTTATTGATACTTATA
ACGCTTCTTGTTCGATTGATAGAAATGTTACACATAAATTAAACATCGAT
GTTAAAGAACAGGAGACTCTCGACGATGAAACAGAGGAGAACGccgattt
caaattcaaatttagtGCTTTCAAAGACGATAAAACAGCGATCAGTGGTT
TGGTCTTTCTTGGAGATTTAATCCATTTCGAATTGGAGTTACTTTCCAAC
TCTAAAGTTGTGAAAACGTCTCCTCAAGATTGTTTTGCTACACGTTTGGA
TGGAACAGGACGCTACGATCTTATTAAAGATAGATGTGTAGGTGATGATG
AAACACTCGCGATCACATCGTCCAATCAACAAACACACATGTTCTCGTGG
GAAATGGAAGCTTTCAGATATTTTGGAAATTCTGACGGTATTGTAATCAC
CTGTCGAGTTTTGGTTTGTCGAAATAATCCTTTTGATCAACTGACAGATG
AATGTAAGAGATGTGGACAAACTACCGTCAGACGAAAACGAAGaaatgat
gaagatgaagaggAGAAAGATGTTTTGAGCGAAACTTCGCTGAAGAGTGA
TCCCATTTTCCTTGTTGAAAGACCAGGTATAGGTAAAGGCCTTGCCAAAG
TATCTGGCGATGAAGCAGGTCTCGATCACACTGAAAAGATGGCAATCATT
GTCGTTTGTGGTGTTGTTGCTTTGGTTCTTTGTGTTGCCATCGTCAAAAA
GGTTTTCTTCAAAAGTGGAATGCCAGAAAAACCTGTTGTTGGATAAAGAA
ACACTTTCTTGCAGCCNTTTTTCTTCAAACCTCAAAGTGGAATGCCAGAA
AAACCTGTTGTTGGATAAAAAACACTTTCTTGCAGCCTACCATCTGATAG
ATGGtgtataatttaattttttgcgtTAATAAGGGATAACCAGATGGCAG
ATAGTTTCAGATGTATTGTCGAGAAATGACTATTTGAAACTGTTGTTACA
TTAGAAAACCTCCTTCTCACAAACTCattgggaccccttcccactggaaa
attggctAAATTATCATCccaagtggaaaattatcctttaacttttgtcc
ccactgaaaaaaagtcaaataaaccaatcgcctctgcaaaatattatgct
attttttccatccccagtGAATTTTTTGGCTCGAAAACgatggaatttaa
atccccaacAATAACATGAGAATGTCGGATCCTCCGTCGAGTTTAAGTCC
GttttttttacccccactggctaaTAAATCCTACCGGTCCTGGAGAAGGT
GAAAAGGGGATGTGTTACAATTCTACTGTTTTCttgctaaaattaaaaaa
aattgtaacttgaatgttttgattttgtaaaagagtttggcaaaaacatt
ttataaagttttgctCAGGACTGTGGAAGGCAGAAGATCTGAAACCATCT
GAGATATCCCTATAATGTTTATGTATGTAAGATTAAGTAATCGAGGTGTC
TTTATCTAACTATGTCAAGTTTTGTTTGCTGATCAATAAATCCGAATTTA
CTCTAGATTAAACATTCTAGATCTAAGCATTTTTTATATGTGCCTGTAAG
ATTCTCCGTACCAATTAGAAAATTAgtaatctcaaaatttatttttaaat
gaacTAAACTAATTTTTGTATTAAACTTTGTGTATTGAACCATAACTTTT
AGTCAAGATGATGTATGagaaaaatttccttttaaagttgaata Run BLAST on NCBI transcript from alignment at scaffold_320:130709..135772- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059239 ID=TCONS_00059239|Name=TCONS_00059239|organism=Clytia hemisphaerica|type=transcript|length=5064bp|location=Sequence derived from alignment at scaffold_320:130709..135772- (Clytia hemisphaerica)
ATTCACACATCCCCTACGGTGTTTAGGTTCTGCAAATACTGGATGGATAG
AGATGCATAAGTTTTAACATTTTCAATATTTCAACTTTCAATAGCATCTC
CAATGAAACTCAACTGCTATCAAAACAAAATGGAAATTGGTTTAGAATTC
GATCACCTATCACGTCACTCCTTACCTTATATCGTCAAATTTCATGGTGA
TAATAACTGCCCAACATTAAATGCATCTTCAGCATCTTCAATATACGATG
GACGTCTATGGATGAATGCAAATTACAGTGAATGTGGTATCAAAGCTTTT
GAGAGCGGAAACAAACTAGTGTTCAAACAAATCGTTGAAGTTGTGTACGG
AAAACAAATGAAATCTTTAGATGTTTATCGACATTTTATTGATACTTATA
ACGCTTCTTGTTCGATTGATAGAAATGTTACACATAAATTAAACATCGAT
GTTAAAGAACAGGAGACTCTCGACGATGAAACAGGTAGGCACTTTACCTG
TAGCACACAACGTTGTTTTAACGTCCATCTAATGTTTACAACGTCCATAT
AACGTTAGATGAATACAACAACGTCGGGCGCCATCCGGGTTTCTATACTT
GTGATGCATATTTATTTNACCGCTCCTTTAGAGCTTTAGCGTGGGCGGCC
GCCAATACGCCATCGGAATATCAGATAATCCGAAATGTGGTGAACATTTT
GAAGATTCCTCTCTAGTCTTCGGCTAGATTATCACATTTGATCTTACCCC
CTAAGGACCTAAGGTGTTTAAGCGAATATCGGACAGAGATAGAGGTGCAT
GAGTTTTTTTATTTATCAATGAAAAAATTTCAAAATTTCAAAAAGAGAAT
CAGTGGATTGGAATTTTCCTTGAAAGGAAAAATGTGAAAAAAGAATTCAC
ACATCCCCTACGGTGTTTAGGTTCTGCAAATACTGGATGGATAGAAATGC
ATAAGTTTTAACATTTTCAATATTTCAACTTTCAATAGCATCTCCAATGA
AACTCAACTGCTATCAAAACAAAATGGAAATTGGTTTAGAATTCGATCAC
CTATCACGTCACTCCTTACCTTATATCGTCAAATTTCATGGTGATAATAA
CTGCCCAACATTAAATGCATCTTCAGCATCTTCAATATACGATGGACGTC
TATGGATGAATGCAAATTACAGTGAATGTGGTATCAAAGCTTTTGAGAGC
GGAAACAAACTAGTGTTCAAACAAATCGTTGAAGTTGTGTACGGAAAACA
AATGAAATCTTTAGATGTTTATCGACATTTTATTGATACTTATAACGCTT
CTTGTTCGATTGATCGAAATGTTACACATAAATTAAACATCGATGTTAAA
GAACAGGAGACTCTCGACGATGAAACAGGTAGGCACTTTACCTGTAGCAC
ACAACGTTGTTTTAACGTCCATCTAATGTTTACAACGTCCATATAACGTT
AGATGAATACAACAACGTCGGGCGCCATCCGGGTTTCTATACTTGTGATG
CATATTTATTTTTAATGTATGTTTTTATGAGGCCCTCCAAGCGGTTTTCT
TGATGTCGTACTAGAGACTTTCTTCTGGCGAGGAAACAGGTAGGTACTTT
ACAGGGGGGTTTCATGGTTGACGGAGGAGTGGAATCGGCCCTTTTTCGAA
CGGAGTGGCGGAATTTGACGAAAATTTTGACGGAATTTCGGAAATTGAAT
CTGCTGACGGAGATGGAAAATTAGACAATTTTAGTGTTGAAAAACGGAAT
TTAGCAAATGTTTTTGCAGTTTTTCGGAATTATGGCTAAAGATATTTGAA
TCACGCAGAATTTTTTACAAAGAAAGCTTGAACTTCAAAGGAATCTTTGA
TGGTGGAGTTCTTATTTTCACCCTGAAAATTGTAAAAAATCACCAAAAGT
CGTCCCTTTCCAGATACACATCTTGAAAATTAGTAAAATTTGGGACCCTA
CCAGATATCTTCAGAGCCTAAAAAAGGGATCCTGACTAGCAACATATCCC
CCCGTACCCAATTATGCTTACCTTTTCTGAAGGTGAATGGTAAAATACGA
TGGCTTTTTTACGGAAAAACTTAATGAAGAACTAACTCGGCAAAAAGTAC
TCTAGGGGTTCACGACTTGGCGAAAATAAAGTTGATTCAATAATACAGTG
GGACTTCCAATTTGCGGACACCACGGGGAAAAGGGTGGTTAGTGTCTGCT
ATAGTGTCCACTAATAAGTACATATTTCAAACTTTTTTTTTATTCAACAG
AGGAGAACGCCGATTTCAAATTCAAATTTAGTGCTTTCAAAGACGATAAA
ACAGCGATCAGTGGTTTGGTCTTTCTTGGAGATTTAATCCATTTCGAATT
GGAGTTACTTTCCAACTCTAAAGTTGTGAAAACGTCTCCTCAAGATTGTT
TTGCTACACGTTTGGATGGAACAGGACGCTACGATCTTATTAAAGATAGG
TAAACATATATTTATTAGTCAGCCCCGGTGACTCTTCAAATCGGTTCAAC
GATTTTTTTCCCGCTAGTTGTCTTCGTCGTCGTTAAGACTTTCATTTTTA
ATTCCGATTTCGGATTATTTTCGGGAAACAGGATTTCGGGATTATTTAGC
GCGCGAAAATAATTTTTTCTTAGCAANTTTCTCAAAAAATTGTGTGAAGA
AAATCTCCATGAAGAAAAACAACAACAATAGGTAGAAAAGGTAGCTAAGA
AATGCTATGTTCAGTTTCAAAACCTTCGCGAGTGTTTTGCCTTAATTTCT
TTTTTAGCGGAAACCTTTACCAACTTTAATAACCTTAAAATCATTTAGAC
GATGCTATAGTCTGTTAAAGGGATAGTTTATCGGCGGTAAAATGTATATG
TGTGGAGTTTTCAACCGTAATGTCAGTATACGGAAAAATTGGCGATAGAG
TTTTGAAAAAATGTCAAGCTCTACCGGCTGTAAACTATTTTCGCCGCAAA
AAAATATCTGTTTGCTTTGGCTTTGGTTTTATTTCTTAGTTAGTGATTTG
AAATCATTCAATACACCTTTTCTAACGTAGCCGCCAATTGCCACGTGAGC
ATTGTTTTGTCCGTTTTACCACCCTAAAACCGTTCCAGTCTTTTTTTCGC
ACCTATAAGACAATAGAAAAAAACCAGCTGGCACACAACGTTGTTTAAAC
GTTAATCTAACGTTCACAACGTCCATTTAACGTTAGATTAACGTTAAAAC
AACGTTGTATGCCAGCTGGGAAGTGTAAAAAAAAGGATTAGATCGAGTTT
AGGGTCGTAAATCAAATAATAAAGTGGCAAGTGTCTGACCGCGCGACTAC
GGTCGAAGAGGTGTATTGGCCAAATATTCTTATCATTTTTTTAGATGTGT
AGGTGATGATGAAACACTCGCGATCACATCGTCCAATCAACAAACACACA
TGTTCTCGTGGGAAATGGAAGCTTTCAGATATTTTGGAAATTCTGACGGT
ATTGTAATCACCTGTCGAGTTTTGGTTTGTCGAAATAATCCTTTTGATCA
ACTGACAGATGAATGTAAGAGATGTGGACAAACTACCGTCAGACGAAAAC
GAAGAAATGATGAAGATGAAGAGGAGAAAGATGTTTTGAGCGAAACTTCG
CTGAAGAGTGATCCCATTTTCCTTGTTGAAAGACCAGGTATAGGTATGTC
GCTCTCTCTCTCATTATTTCTCTTCTTACATGTTGTAAATTGTCGATTTG
AGTGATACTTCATTTCCTGTATTAAGTTTCCACTGACTTTTCTGAGATTT
TTCCGCTAAATAATGTTTTCAAGGCAGTTGTTGCACTCATAATGATTTAT
GAAAAGGCCCAATGTCATTATTAAATCTGTCATAATTTAAATACGTACTA
TGTACTTATCGTGCCTTTTACTGATGCATATTTCGTGACTGTTCCCCAGC
TCCCGGACTATAACTTTAGTCAACTCTGATGTTATTGTTTTATTTATTCT
ACACAAAGGCCTTGCCAAAGTATCTGGCGATGAAGCAGGTCTCGATCACA
CTGAAAAGATGGCAATCATTGTCGTTTGTGGTGTTGTTGCTTTGGTTCTT
TGTGTTGCCATCGTCAAAAAGGTTTTCTTCAAAAGTGGAATGCCAGAAAA
ACCTGTTGTTGGATAAAGAAACACTTTCTTGCAGCCNTTTTTCTTCAAAC
CTCAAAGTGGAATGCCAGAAAAACCTGTTGTTGGATAAAAAACACTTTCT
TGCAGCCTACCATCTGATAGATGGTGTATAATTTAATTTTTTGCGTTAAT
AAGGGATAACCAGATGGCAGATAGTTTCAGATGTATTGTCGAGAAATGAC
TATTTGAAACTGTTGTTACATTAGAAAACCTCCTTCTCACAAACTCATTG
GGACCCCTTCCCACTGGAAAATTGGCTAAATTATCATCCCAAGTGGAAAA
TTATCCTTTAACTTTTGTCCCCACTGAAAAAAAGTCAAATAAACCAATCG
CCTCTGCAAAATATTATGCTATTTTTTCCATCCCCAGTGAATTTTTTGGC
TCGAAAACGATGGAATTTAAATCCCCAACAATAACATGAGAATGTCGGAT
CCTCCGTCGAGTTTAAGTCCGTTTTTTTTACCCCCACTGGCTAATAAATC
CTACCGGTCCTGGAGAAGGTGAAAAGGGGATGTGTTACAATTCTACTGTT
TTCTTGCTAAAATTAAAAAAAATTGTAACTTGAATGTTTTGATTTTGTAA
AAGAGTTTGGCAAAAACATTTTATAAAGTTTTGCTCAGGACTGTGGAAGG
CAGAAGATCTGAAACCATCTGAGATATCCCTATAATGTTTATGTATGTAA
GATTAAGTAATCGAGGTGTCTTTATCTAACTATGTCAAGTTTTGTTTGCT
GATCAATAAATCCGAATTTACTCTAGATTAAACATTCTAGATCTAAGCAT
TTTTTATATGTGCCTGTAAGATTCTCCGTACCAATTAGAAAATTAGTAAT
CTCAAAATTTATTTTTAAATGAACTAAACTAATTTTTGTATTAAACTTTG
TGTATTGAACCATAACTTTTAGTCAAGATGATGTATGAGAAAAATTTCCT
TTTAAAGTTGAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059239-exon-scaffold_320-1575043694:135289..135772 | TCONS_00059239-exon-scaffold_320-1575043694:135289..135772 | Clytia hemisphaerica | exon |
| TCONS_00059239-exon-scaffold_320-1575043694:133324..133522 | TCONS_00059239-exon-scaffold_320-1575043694:133324..133522 | Clytia hemisphaerica | exon |
| TCONS_00059239-exon-scaffold_320-1575043694:132128..132428 | TCONS_00059239-exon-scaffold_320-1575043694:132128..132428 | Clytia hemisphaerica | exon |
| TCONS_00059239-exon-scaffold_320-1575043694:130709..131818 | TCONS_00059239-exon-scaffold_320-1575043694:130709..131818 | Clytia hemisphaerica | exon |
| TCONS_00059239-exon-scaffold_320-1510915933:135289..135772 | TCONS_00059239-exon-scaffold_320-1510915933:135289..135772 | Clytia hemisphaerica | exon |
| TCONS_00059239-exon-scaffold_320-1510915933:133324..133522 | TCONS_00059239-exon-scaffold_320-1510915933:133324..133522 | Clytia hemisphaerica | exon |
| TCONS_00059239-exon-scaffold_320-1510915933:132128..132428 | TCONS_00059239-exon-scaffold_320-1510915933:132128..132428 | Clytia hemisphaerica | exon |
| TCONS_00059239-exon-scaffold_320-1510915933:130709..131818 | TCONS_00059239-exon-scaffold_320-1510915933:130709..131818 | Clytia hemisphaerica | exon |
| TCONS_00059239-exon-scaffold_320-1491911889:135289..135772 | TCONS_00059239-exon-scaffold_320-1491911889:135289..135772 | Clytia hemisphaerica | exon |
| TCONS_00059239-exon-scaffold_320-1491911889:133324..133522 | TCONS_00059239-exon-scaffold_320-1491911889:133324..133522 | Clytia hemisphaerica | exon |
| TCONS_00059239-exon-scaffold_320-1491911889:132128..132428 | TCONS_00059239-exon-scaffold_320-1491911889:132128..132428 | Clytia hemisphaerica | exon |
| TCONS_00059239-exon-scaffold_320-1491911889:130709..131818 | TCONS_00059239-exon-scaffold_320-1491911889:130709..131818 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_320 | supercontig | scaffold_320:130709..135772 - |
Blast
The following BLAST results are available for this feature:
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