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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059230 ID=TCONS_00059230|Name=TCONS_00059230|organism=Clytia hemisphaerica|type=transcript|length=714bp
CAGACATCGATTCAGAGCAAAGATTGTTCTGCACACAAGATTCAGCAAAC
ACAAGAAGAAATCGCACTACAATTATTAGCGTAAAGATTACTGAGTGAAT
CCTTAAGCAAGttTCAGGCTTTGTGAAAAATGGTTTCAAGAAGAAAAATG
ACATCCTTGATCATTTTATTGATCGCCATGACTACGCTTGATCAAGTGTA
TTGTGCTGGTCAGTATAATGTCTATTTTCCCGAGGCCATGATGCTTAAAT
ACAACAATAAGCCGTACATGCGAGTCTATCAGACGGAATTTGCGGAAGCC
CCGGGTGCATCACAAACAACATACCCATCCACCACATCCAAGTATAAAGA
TATATGGGAAGATAAGGATGGAAATATTATCATTTATCCTGACGGAGGAG
ATATCAACAATAAAGGGTTTGTTGGCATTGGTGATTACcgcaatcaaatc
aaatttgttAACAATTATAAAACGCAAGGAGCTAAGAATCCTATGATTAA
AACATTTATCGTTCCTTATGAAACCGTTTATGAAATTGTCACCAAAGTGA
AGCCAGAATCAGGAGCTGCAAAGACAGATTCAATCAATGTGGATATTGCG
TATTCTAATCAGTTTGGTTTGGTTAAAACAGATATGGATATCATGAGGTC
AGACGCTCTTCCTGATTCTTTGGTTACCATGGCAGAGAAATCACTCAGTG
GTGCAGAGCTGGGC Run BLAST on NCBI protein sequence of TCONS_00059230-protein >TCONS_00059230-protein ID=TCONS_00059230-protein|Name=TCONS_00059230-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MVSRRKMTSLIILLIAMTTLDQVYCAGQYNVYFPEAMMLKYNNKPYMRVY
QTEFAEAPGASQTTYPSTTSKYKDIWEDKDGNIIIYPDGGDINNKGFVGI
GDYRNQIKFVNNYKTQGAKNPMIKTFIVPYETVYEIVTKVKPESGAAKTD
SINVDIAYSNQFGLVKTDMDIMRSDALPDSLVTMAEKSLSGAELG Run BLAST on NCBI transcript from alignment at scaffold_320:230253..232029+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059230 ID=TCONS_00059230|Name=TCONS_00059230|organism=Clytia hemisphaerica|type=transcript|length=1777bp|location=Sequence derived from alignment at scaffold_320:230253..232029+ (Clytia hemisphaerica)
CAGACATCGATTCAGAGCAAAGATTGTTCTGCACACAAGATTCAGCAAAC
ACAAGAAGAAATCGCACTACAATTATTAGCGTAAAGATTACTGAGTGAAT
CCTTAAGCAAGGTAGGTGAAGTTAGTTACTCACAATTCAATATAAATAca
accctgtgtcacagacccgctgggaccccagtcccactggaaaatttggc
aacaATTTTGCCCCCGtttggaaaataccctggaatttcagcccaagttg
gaatttgactttgatttcatccccattcaagatccattgtttaaaaattg
cactcaaaaccatccccactggattttttaaccttgaaacaatataattt
ctatcctcattgagattttaataggaatttttattcccactgaggaaaaa
gttccaccggggctgtgagacagagaTGTATAAATGTAATTTTCAATAAA
CCATTGACTTTTATAACAAGCCGATACCCCTGCTACTAGGTTTGTGAGGT
GACGGGTATGcccgagccaaaaatcgaaaatctacCCTTAGAGATAGGAC
AAATTGGCGTctttgggacccttagagagactcttctcaaaatttttgtc
gattttcactcaatctttgtccaaattttagaaaatcacgACTCTTTGAG
AgagtaaattttgaatttcgtgatttttggacccttaccgagACTCAATT
TTCTTGCTtcttaatggtttttgtacctctttgagagactttcgagggtg
tgaaaaagggacccttatggctcacaCAGACCAtgagtaacccccccccc
ccggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCCCCCCCGGGGTCGATAACAAGTcattgtca
atttaatttgaataaaattgtCCATACCTATACCTATCTTTTTTCCAGCA
AGGTAAAGTTAGAGATGTCAGTCAGTGAAATCTTTAGTCCGGCAAAAACT
AAACCATTCATGATACCTgtaactttcttttctttttcttagttTCAGGC
TTTGTGAAAAATGGTTTCAAGAAGAAAAATGACATCCTTGATCATTTTAT
TGATCGCCATGACTACGCTTGATCAAGTGTATTGTGCTGGTCAGTATAAT
GTCTATTTTCCCGAGGCCATGATGCTTAAATACAACAATAAGCCGTACAT
GCGAGTCTATCAGACGGAATTTGCGGAAGCCCCGGGTGCATCACAAACAA
CATACCCATCCACCACATCCAAGTATAAAGATATATGGGAAGATAAGGAT
GGAAATATTATCATTTATCCTGACGGAGGAGATATCAACAATAAAGGGTT
TGTTGGCATTGGTGATTACcgcaatcaaatcaaatttgttAACAATTATA
AAACGCAAGGAGCTAAGAATCCTATGATTAAAACATTTATCGTTCCTTAT
GAAACCGTTTATGAAATTGTCACCAAAGTGAAGCCAGAATCAGGTGCTGC
AAAGACAGATTCAATCAATGTGGATATTGCGTATTCTAATCAGTTTGGTT
TGGTTAAAACAGNAGCCAGAATCAGGAGCTGCAAAGACAGATTCAATCAA
TGTGGATATTGCGTATTCTAATCAGTTTGGTTTGGTTAAAACAGATATGG
ATATCATGAGGTCAGACGCTCTTCCTGATTCTTTGGTTACCATGGCAGAG
AAATCACTCAGTGGTGCAGAGCTGGGC Coding sequence (CDS) from alignment at scaffold_320:230253..232029+ >TCONS_00059230 ID=TCONS_00059230|Name=TCONS_00059230|organism=Clytia hemisphaerica|type=CDS|length=1170bp|location=Sequence derived from alignment at scaffold_320:230253..232029+ (Clytia hemisphaerica)
ATGGTTTCAAGAAGAAAAATGACATCCTTGATCATTTTATTGATCGCCAT
GACTACGCTTGATCAAGTGTATTGTGCTGGTCAGTATAATGTCTATTTTC
CCGAGGCCATGATGCTTAAATACAACAATAAGCCGTACATGCGAGTCTAT
CAGACGGAATTTGCGGAAGCCCCGGGTGCATCACAAACAACATACCCATC
CACCACATCCAAGTATAAAGATATATGGGAAGATAAGGATGGAAATATTA
TCATTTATCCTGACGGAGGAGATATCAACAATAAAGGGTTTGTTGGCATT
GGTGATTACcgcaatcaaatcaaatttgttAACAATTATAAAACGCAAGG
AGCTAAGAATCCTATGATTAAAACATTTATCGTTCCTTATGAAACCGTTT
ATGAAATTGTCACCAAAGTGAAGCCAGAATCAGGAGCTGCAAAGACAGAT
TCAATCAATGTGGATATTGCGTATTCTAATCAGTTTGGTTTGGTTAAAAC
AGATATGGATATCATGAGGTCAGACGCTCTTCCTGATTCTTTGGTTACCA
TGGCAGAGAAATCACTCAGTGGTGCAGAGCTGGGCATGGTTTCAAGAAGA
AAAATGACATCCTTGATCATTTTATTGATCGCCATGACTACGCTTGATCA
AGTGTATTGTGCTGGTCAGTATAATGTCTATTTTCCCGAGGCCATGATGC
TTAAATACAACAATAAGCCGTACATGCGAGTCTATCAGACGGAATTTGCG
GAAGCCCCGGGTGCATCACAAACAACATACCCATCCACCACATCCAAGTA
TAAAGATATATGGGAAGATAAGGATGGAAATATTATCATTTATCCTGACG
GAGGAGATATCAACAATAAAGGGTTTGTTGGCATTGGTGATTACcgcaat
caaatcaaatttgttAACAATTATAAAACGCAAGGAGCTAAGAATCCTAT
GATTAAAACATTTATCGTTCCTTATGAAACCGTTTATGAAATTGTCACCA
AAGTGAAGCCAGAATCAGGAGCTGCAAAGACAGATTCAATCAATGTGGAT
ATTGCGTATTCTAATCAGTTTGGTTTGGTTAAAACAGATATGGATATCAT
GAGGTCAGACGCTCTTCCTGATTCTTTGGTTACCATGGCAGAGAAATCAC
TCAGTGGTGCAGAGCTGGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059230-exon-scaffold_320-1491911889:230253..230363 | TCONS_00059230-exon-scaffold_320-1491911889:230253..230363 | Clytia hemisphaerica | exon |
| TCONS_00059230-exon-scaffold_320-1510915933:230253..230363 | TCONS_00059230-exon-scaffold_320-1510915933:230253..230363 | Clytia hemisphaerica | exon |
| TCONS_00059230-exon-scaffold_320-1575043694:230253..230363 | TCONS_00059230-exon-scaffold_320-1575043694:230253..230363 | Clytia hemisphaerica | exon |
| TCONS_00059230-exon-scaffold_320-1491911889:231345..231795 | TCONS_00059230-exon-scaffold_320-1491911889:231345..231795 | Clytia hemisphaerica | exon |
| TCONS_00059230-exon-scaffold_320-1510915933:231345..231795 | TCONS_00059230-exon-scaffold_320-1510915933:231345..231795 | Clytia hemisphaerica | exon |
| TCONS_00059230-exon-scaffold_320-1575043694:231345..231795 | TCONS_00059230-exon-scaffold_320-1575043694:231345..231795 | Clytia hemisphaerica | exon |
| TCONS_00059230-exon-scaffold_320-1491911889:231878..232029 | TCONS_00059230-exon-scaffold_320-1491911889:231878..232029 | Clytia hemisphaerica | exon |
| TCONS_00059230-exon-scaffold_320-1510915933:231878..232029 | TCONS_00059230-exon-scaffold_320-1510915933:231878..232029 | Clytia hemisphaerica | exon |
| TCONS_00059230-exon-scaffold_320-1575043694:231878..232029 | TCONS_00059230-exon-scaffold_320-1575043694:231878..232029 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_320 | supercontig | scaffold_320:230253..232029 + |
Blast
The following BLAST results are available for this feature:
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