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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059229 ID=TCONS_00059229|Name=TCONS_00059229|organism=Clytia hemisphaerica|type=transcript|length=750bp
TAAGCATAATTCTCTggacaatttcataaaaatgaaagattaGGTTGTAA
CATTATTATCCTCTTTCTATTCAAGCAtcacttgaaaatattttccacca
GGAAACGGATGCTATAGTTATCAAAACTGATTGCACAATGGATCCAATAA
ATCTGTCTGGTTTTGTTTCATGGAAAACGGCTTTGGGTATTGCGGTGACC
ACGGAGAGTCTCATTCCCAACAATTCAATTCGTTCCATTCATTTGTCATC
TGGTAAATGtccatcaaaatttttgttttgcgtTGTTGCTGGTAAGAATG
AAGACGATTTTAAAAATCTAGCGAATGATATTTTCAAAGAAGCAGAAGCC
CTGAAGTGTCGAAGCATTTCCATTGCAGCAACAGAATTCAAATCTATCAG
CAGAAAGAGGGTCGCTGAAATTTATCTCgaaactttaaagaaaaagaata
tgGGACACTTGAAACTTGTACGTTTCAGTGGCAAGAAAAGCCAGCTCGGT
GCCGTTTTTCGAGATCTcgataaaatattgaaatcagttttattgaaagg
aCAGAAAAAGAGGAACATAGACCAAACAGAAGATAGTTAAGATTATTATG
TAAAAAAGgtttataatatattttaataaatagaaAATTACCTCAGTTGG
CCAACCCAATTGCCCATATGATGAtgaccaattttcaatttttcggaaat
gtcaaatttgaagacgttgccgtaaactagttttagcaAATGGAGGTATG Run BLAST on NCBI protein sequence of TCONS_00059229-protein >TCONS_00059229-protein ID=TCONS_00059229-protein|Name=TCONS_00059229-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MDPINLSGFVSWKTALGIAVTTESLIPNNSIRSIHLSSGKCPSKFLFCVV
AGKNEDDFKNLANDIFKEAEALKCRSISIAATEFKSISRKRVAEIYLETL
KKKNMGHLKLVRFSGKKSQLGAVFRDLDKILKSVLLKGQKKRNIDQTEDS Run BLAST on NCBI transcript from alignment at scaffold_320:203541..204722+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059229 ID=TCONS_00059229|Name=TCONS_00059229|organism=Clytia hemisphaerica|type=transcript|length=1182bp|location=Sequence derived from alignment at scaffold_320:203541..204722+ (Clytia hemisphaerica)
TAAGCATAATTCTCTggacaatttcataaaaatgaaagattaGGTTGTAA
CATTATTATCCTCTTTCTATTCAAGCAtcacttgaaaatattttccacca
GGAAACGGATGCTATAGTTATCAAAACTGATTGCACAATGGATCCAATAA
ATCTGGTAAGGTTTTCTAATTGCTCTAGAAATTTCAGGAAATTTAAAACT
CTTTTTAATAATGTTAAGGGTGCTGAAGACTATCCTTCAGGTGTTGAAGG
GGTGTTGAAGTAATTGGTCAGCAAAGTGcacaaagtaaaacaaaaaacac
TACAACTATActcaatcaaattttcaaatgatctGAAATCTGAAAATTAA
TCTTTTTAGTCTGGTTTTGTTTCATGGAAAACGGCTTTGGGTATTGCGGT
GACCACGGAGAGTCTCATTCCCAACAATTCAATTCGTTCCATTCATTTGT
CATCTGGTAAATGtccatcaaaatttttgttttgcgtTGTTGGTAAGTAA
CTAACGTATTATGGTTTTGGTCAAGGCTATTCCATTTACtttcaacaata
aaaaaatacagGAAAATACATAAAGGTATGGTTCTTTAGAGGGCCTTTTA
AGTACATTATGTATACAAAACCCTAGATCCCCTAATATCGTTTAATCATT
ATTTTCAGATCATTTCTTTCGTTATTATCAAGattaaaatcttcaaatta
ttttccttttccttttacAGCTGGTAAGAATGAAGACGATTTTAAAAATC
TAGCGAATGATATTTTCAAAGAAGCAGAAGCCCTGAAGTGTCGAAGCATT
TCCATTGCAGCAACAGAATTCAAATCTATCAGCAGAAAGAGGGTCGCTGA
AATTTATCTCgaaactttaaagaaaaagaatatgGGACACTTGAAACTTG
TACGTTTCAGTGGCAAGAAAAGCCAGCTCGGTGCCGTTTTTCGAGATCTc
gataaaatattgaaatcagttttattgaaaggaCAGAAAAAGAGGAACAT
AGACCAAACAGAAGATAGTTAAGATTATTATGTAAAAAAGgtttataata
tattttaataaatagaaAATTACCTCAGTTGGCCAACCCAATTGCCCATA
TGATGAtgaccaattttcaatttttcggaaatgtcaaatttgaagacgtt
gccgtaaactagttttagcaAATGGAGGTATG Coding sequence (CDS) from alignment at scaffold_320:203541..204722+ >TCONS_00059229 ID=TCONS_00059229|Name=TCONS_00059229|organism=Clytia hemisphaerica|type=CDS|length=1359bp|location=Sequence derived from alignment at scaffold_320:203541..204722+ (Clytia hemisphaerica)
ATGGATCCAATAAATCTGTCTGGTTTTGTTTCATGGAAAACGGCTTTGGG
TATTGCGGTGACCACGGAGAGTCTCATTCCCAACAATTCAATTCGTTCCA
TTCATTTGTCATCTGGTAAATGtccatcaaaatttttgttttgcgtTGTT
GCTGGTAAGAATGAAGACGATTTTAAAAATCTAGCGAATGATATTTTCAA
AGAAGCAGAAGCCCTGAAGTGTCGAAGCATTTCCATTGCAGCAACAGAAT
TCAAATCTATCAGCAGAAAGAGGGTCGCTGAAATTTATCTCgaaacttta
aagaaaaagaatatgGGACACTTGAAACTTGTACGTTTCAGTGGCAAGAA
AAGCCAGCTCGGTGCCGTTTTTCGAGATCTcgataaaatattgaaatcag
ttttattgaaaggaCAGAAAAAGAGGAACATAGACCAAACAGAAGATAGT
TAAATGGATCCAATAAATCTGTCTGGTTTTGTTTCATGGAAAACGGCTTT
GGGTATTGCGGTGACCACGGAGAGTCTCATTCCCAACAATTCAATTCGTT
CCATTCATTTGTCATCTGGTAAATGtccatcaaaatttttgttttgcgtT
GTTGCTGGTAAGAATGAAGACGATTTTAAAAATCTAGCGAATGATATTTT
CAAAGAAGCAGAAGCCCTGAAGTGTCGAAGCATTTCCATTGCAGCAACAG
AATTCAAATCTATCAGCAGAAAGAGGGTCGCTGAAATTTATCTCgaaact
ttaaagaaaaagaatatgGGACACTTGAAACTTGTACGTTTCAGTGGCAA
GAAAAGCCAGCTCGGTGCCGTTTTTCGAGATCTcgataaaatattgaaat
cagttttattgaaaggaCAGAAAAAGAGGAACATAGACCAAACAGAAGAT
AGTTAAATGGATCCAATAAATCTGTCTGGTTTTGTTTCATGGAAAACGGC
TTTGGGTATTGCGGTGACCACGGAGAGTCTCATTCCCAACAATTCAATTC
GTTCCATTCATTTGTCATCTGGTAAATGtccatcaaaatttttgttttgc
gtTGTTGCTGGTAAGAATGAAGACGATTTTAAAAATCTAGCGAATGATAT
TTTCAAAGAAGCAGAAGCCCTGAAGTGTCGAAGCATTTCCATTGCAGCAA
CAGAATTCAAATCTATCAGCAGAAAGAGGGTCGCTGAAATTTATCTCgaa
actttaaagaaaaagaatatgGGACACTTGAAACTTGTACGTTTCAGTGG
CAAGAAAAGCCAGCTCGGTGCCGTTTTTCGAGATCTcgataaaatattga
aatcagttttattgaaaggaCAGAAAAAGAGGAACATAGACCAAACAGAA
GATAGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059229-exon-scaffold_320-1491911889:203541..203695 | TCONS_00059229-exon-scaffold_320-1491911889:203541..203695 | Clytia hemisphaerica | exon |
| TCONS_00059229-exon-scaffold_320-1510915933:203541..203695 | TCONS_00059229-exon-scaffold_320-1510915933:203541..203695 | Clytia hemisphaerica | exon |
| TCONS_00059229-exon-scaffold_320-1575043694:203541..203695 | TCONS_00059229-exon-scaffold_320-1575043694:203541..203695 | Clytia hemisphaerica | exon |
| TCONS_00059229-exon-scaffold_320-1491911889:203900..204032 | TCONS_00059229-exon-scaffold_320-1491911889:203900..204032 | Clytia hemisphaerica | exon |
| TCONS_00059229-exon-scaffold_320-1510915933:203900..204032 | TCONS_00059229-exon-scaffold_320-1510915933:203900..204032 | Clytia hemisphaerica | exon |
| TCONS_00059229-exon-scaffold_320-1575043694:203900..204032 | TCONS_00059229-exon-scaffold_320-1575043694:203900..204032 | Clytia hemisphaerica | exon |
| TCONS_00059229-exon-scaffold_320-1491911889:204261..204722 | TCONS_00059229-exon-scaffold_320-1491911889:204261..204722 | Clytia hemisphaerica | exon |
| TCONS_00059229-exon-scaffold_320-1510915933:204261..204722 | TCONS_00059229-exon-scaffold_320-1510915933:204261..204722 | Clytia hemisphaerica | exon |
| TCONS_00059229-exon-scaffold_320-1575043694:204261..204722 | TCONS_00059229-exon-scaffold_320-1575043694:204261..204722 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_320 | supercontig | scaffold_320:203541..204722 + |
Blast
The following BLAST results are available for this feature:
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