TCONS_00059227 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059227
Unique NameTCONS_00059227
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2864

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059227 ID=TCONS_00059227|Name=TCONS_00059227|organism=Clytia hemisphaerica|type=transcript|length=2864bp
GTAAATGGTACTTCTGGTTAAATAATCACGTTCTTTAAACTAATTCCTAT
AAAATGCTACATTTATTTAGACCAAAATACTTTCCTATAAAATAATCACA
ACaccaacaaaacaatttcaCCGACATGAGGCTGGAGCTGATATCCTTGC
TACTCTCCAACCTTTTTACACTTTGTAATTCTTACACTTTTATGGACAAA
AACAAATCATTTCTTCAATATAAACAATGGAATATGGATCAAACGGGAAC
ACTGAGTTTCAAGTTCAAAACATTAAACACATATGGACTTATCTTATACA
GTGATACAAGTGAGACGTCCGAATACACGGAAAGTTATATCGCTATGAAA
TTAATTTACGGACAGCTAGAAGTCACCATACAAATGGGTGCTGATGATTA
TCGATCTAATAGAAGAGTTAAACTCGGATCAAATCTAAATGATTTAGAAT
GGCATACTGTAGAAATACAACGCGACGCTGACCATCGTCAAGTGACACAC
GTGCGGCTTGATTCGGAAGCGCAAAGTCTTTTTAACGATGGTGAACATGA
TCGTATGTTTTTAAATTCTGGTCTCTTTTTTGGTGGATTACCGCAGAAAA
TTGATAACATTGTGGATGGGAGTTGGGAACTAGAGCCAAGGCTAGTGGGT
TGCATTGAAGAAGTGAAATACAAATCAGGGGCTAATGAGACTTTCACAGA
AGGTGAACTTTTAGCCTCTGATGAAGTGAAACCAGGCTGTATGAATGCTT
GTCAGGAAAATGTTTGTCCGAATGGAGGGAAATGTATCAATTATTTCACG
GAATACCGATGTGATTGTATTGGAACTGGATTTACAGGACCTTCTTGTCA
AAAAGAGGCTGACATCATCTCATTCGACGGTAACACTAGGCTGGAAATTA
ATGTTCCACCTAGCCTACGATCGACAACGAACAATCAGATCGCGTTGCGT
TTCAAGACACGAGAATCAAATGGTCTTATCATGGCAGCGTGGTCGAAGAA
TGATCACCTTATGATTGAATTGAAAAACACCATCATTCAATTGAGTATTG
ATCTAGGAGGAGGTTATCACGTGTTCCGAGTAAACGATCAATCATTCAGC
GATGGGTTGTGGCATTTGATTGAGATCACACGAAAAGGACGAGATGTCTA
TTTAGTCGTTGATAGAAAATATTTCATGGACCGTTCGACGAGTGGTCAAT
TCAGTAAATTCGATCTACGAGAGAAATTATACATTGGTGGCCACCCAGAT
GTCAAAGGTTTGGGTGATATCAACAGTAATAGTGGAACTAACTTCAAAGG
ATGTATACAACAAGTCTATTTCAATGAACTGAACATCATTTACAAAGTAT
TACACACAACAAATCAAgcttattatttgaacggtacAAAAATCACTAAT
TGTAGTGTGACCAAGGCCAAGAAGATTGTGGTGAGAGGAAATAAAGACAA
TAAAATCAGCGAGAGTGCCAAACCAAGTGAAGAAAAATCTCCTACTGCTT
CTTCAAATTCCAAgGTATCTAAAAAGCACGTCGATGACGAAAGCAAAACG
TTAAGTAAAAATTCAGTCACGTGGATAGTTGTTGGGTTAGTGTGCGGAAC
GCTTGTCTTAATCGTAACCGTTATCGTGATAGTACACAATGTCAAGCACC
GATATAGCGGAGTGTTTTTATCCTCCCACGTTAAAGAACAATATCAAAAA
CAATTGACGCCCGATGGCGCAGGAACTTTATTGTTTCAACCAAGAAATGG
AGGGCGGATTGTTATAGAACCACATCTGGTGTAAACGAGGCGGAGAAGTA
GCACCCTTACGCCCTTTATGCATGGGTAGGCGGATTCAAAGATGAATTGT
TGGAAGTAGTTGGCGATACTAAAGAATCCTGAGGTTGACCAAAATTTGac
aatcttttaaaatcatTGTGATTAACACTTTTAGCCTACTTTGCTTAAAT
CCACACACTTGTGAACAGTAAAGCATTCAACATTATCACGACTCAGGTTT
TGGACGTAGAAACTCTCAAGGGGTTTTAACAACACAAATTATTATACGGA
AGCGGGATAACATATTGCCTATTGAAGATaatctaattcgaatttttctg
aaattcgAACATTCTGGAATGTGCTTTGAAATACTTCATGAAATCATTCT
CTAATTCGGATCAGATTCTCTgttcttgaaaatcgaattcgaGACAGGCA
GCTATCAGTTTGCTTAGGGCGAAATTGATATGAAAACACAGCGTAAACAC
GGTACAATGATGTCTAACATCAATGACAAAGGATATGTCACAAGTAActt
gaaatataaaaaactcGAATATTTGAAGGTTtggtttttataagattttg
atCAGTGAAACATTGAATATGAAGTTGAAGTGGAGAAGAGACACAAGCAC
CGACCAATCATTATATTGGAATTTGGAAAACAATTAATTgtgcaaaaatt
tcatttttaaagttgagttacatttattttcaatattcccAATTCAGATT
TTAGTTATAAGCGTACCCACTCGAATACAACTTTTCGACCGTTACCGCCA
ATTACCGCGCGGAcaatttttgtccgttttacccaatgaagtataagccc
gaagggctagaatcgaatctctaacctttctcaggcaagaaaaagtgaag
actTAAAATATGCgtcgtatttttgacgacagagtTGATCtagcaatttt
tttgttttgatgtgatattttttttcgaaatttagcatTAAATTTTAGTT
CCAATCTGCCATTTGTGTAAAAATTAGGCGGACCGTGTTAGGCCACGCAA
CTTTGGTAgaatttgttggcttcaaatcctaccaaggagattcaattcta
gcccttcgggctta
Run BLAST on NCBI

transcript from alignment at scaffold_320:112886..121420+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059227 ID=TCONS_00059227|Name=TCONS_00059227|organism=Clytia hemisphaerica|type=transcript|length=8535bp|location=Sequence derived from alignment at scaffold_320:112886..121420+ (Clytia hemisphaerica)
GTAAATGGTACTTCTGGTTAAATAATCACGTTCTTTAAACTAATTCCTAT
AAAATGCTACATTTATTTAGACCAAAATACTTTCCTATAAAATAATCACA
ACaccaacaaaacaatttcaCCGACATGAGGCTGGAGCTGATATCCTTGC
TACTCTCCAACCTTTTTACACTTTGTAATTCTTACACTTTTATGGACAAA
AACAAATCATTTCTTCAATATAAACAATGGAATATGGATCAAACGGGAAC
ACTGAGTTTCAAGTTCAAAACATTAAACACATATGGACTTATCTTATACA
GTGATACAAGTGAGACGTCCGAATACACGGAAAGTTATATCGCTATGAAA
TTAATTTACGGACAGCTAGAAGTCACCATACAAATGGGTGCTGATGATTA
TCGATCTAATAGAAGAGTTAAACTCGGATCAAATCTAAATGATTTAGAAT
GGCATACTGTAGAAATACAACGCGACGCTGACCATCGTCAAGTGACACAC
GTGCGGCTTGATTCGGAAGCGCAAAGTCTTTTTAACGATGGTGAACATGA
TCGTATGTTTTTAAATTCTGGTCTCTTTTTTGGTGGATTACCGCAGAAAA
TTGATAACATTGTGGATGGGAGTTGGGAACTAGAGCCAAGGTAATACCTG
TTCAGCGTTTAGctgtttttacctttttttctgttTCATCTGACTTGatt
ttaaggaaatttcaacTTATTATTTCTCAATAAGTCAGCAATTTCAGTCA
GTTTTTACTTATTTATTAGCCtatagaaatctaagctagtttgattcagt
cactaggataaatTTGATGGCAAGTTGTGAGTGAATAACATTATTCCAAG
GAAAactccgtaaatataaaaaatctttaaagcgccgaaaatgCTCTATC
GCCATAGGCCGTTTGTTTTAGcattgtgaatacgggcttagttaaccaGA
CTACTCATTTATAgtcaataaattaaaattattaaaatgaaaatcCATAA
TAGTAATTGATTCGTAAATTTATAGCAAGCACAGGATGAATTATGCGATA
TTTTCGTCTCTCTAACGATGCATTTTAGTCTCGAAATCCTAGTTTCAAAA
GGGATCAATTTATCCTATACGTCCTCCTTTGATGAACCGCTATCGGATCA
GTTTAAAATCATAAGAAGCTCTTGATGAAATCAAGTCCTGACATTACTTG
ATAACATCTTGTAGGACAGATAAAGCTAAGAGGACTTTAAACTCTTATTC
TAATTATTACTATTGTTCTTCAGGTTCTAATTAGTGACATGGAAGTTTAG
TAGCTctgcaaaaatatcaaaattcaatttgtcTTTAGTTAAAATACTAT
ATTTGGGTAAATTTTCCATGTGAAAAGGCTATATTATTTTACCATCCGAT
AAAGTAAAATAATCAAACAGCTTTTCTAGATATTTTTAAGACTGTAAATA
CACCCTTTTTatacaagaacaattttataagaatatcgaggcccaaaaaa
attcaaaaataagaacaatctaaGAATACCTGGAATTGAATGGATTTAGG
GGTCAAACAAGTAAAAATAAAGGTATTAgatagaaattcaaaaatttgtc
ATCGAAAGGAGGGGAGGTCGGAAAACATGAAAAGAAATCATAACAGGATA
ACAAGATAATTATATACAACATCTATTACATCATAACATACAATCATATT
ACATCATAATATACAAAAGCCTAATATCTGATAATCTTGTAACAAGGAAA
CGCTATAAAATAAGATTAATTCAAAAGCCTTTGTTTATGTAGACTCCGCC
AAGCAATTTTTGATAGCTAATTTTTAATAGCCCAAATAAAATTAAACTGG
ATTTGTAGGAAAATCTATTCAGGATATTATGTAGGTAATGTAATCTATTT
TGAGACTATTACCTACTTTGGATAATAGAATATTCGCAGAATTATGTTCT
CAGAAAAAAATGCATCACAAGAATGTTGACTCATTTTTTTCGAATTCTCA
TTTCgagatttcaatttcaaaatttcaaaaactttaaaatagatCATGAT
CATTCAATTTTGTTGATAAATATAATCTTAAATGGTATAAGGTAAAAGGC
TGCTAATATTTCTTTAGATGAAACATAAATTTTAACTTGTCACccttttt
tctctatttttagcAAACTTTAAGAATGCcgcatttcaaaattttaacaa
acttttaaattcattttcgttggtttattttttttctcgttaTTTTATTc
aacaattttcatttcattattaaATTAACAACCTACTAAAACTCGACTAA
TTATTAACCCCTTGGTCATCAAGAATCATATGACTATCCTTGGACCAATC
AGAAGCCAAGAAAACCACTTAAAGAACCAATGAAAACCAGGTATTAACAA
ACACGACTAACATTATTGCAAGATTTCTATATGCTCATTTTGCTTTTTCT
ATTCAAATAAAGCAGGCTAGTGGGTTGCATTGAAGAAGTGAAATACAAAT
CAGGGGCTAATGAGACTTTCACAGAAGGTGAACTTTTAGCCTCTGATGAA
GTGAAACCAGGCTGTATGAATGCTTGTCAGGAAAATGTTTGTCCGAATGG
AGGGAAATGTATCAATTATTTCACGGAATACCGATGTGATTGTATTGGAA
CTGGATTTACAGGACCTTCTTGTCAAAAAGGTACCTCCTTGTCATACATA
TATTCATATGCTACtgttatgcaacttttctgtagGAGGGGATGCAACTA
GGATTTAACCAGGATTTGAGAATATCGGGTATGtgtggactcaaaaaaat
tCCTGAGCTCAAAgagtattttttttacttttcatggTTTTCGTACCTTT
AGATACAAAAAGGGAAAATATCGTACCTTAGAGaaataattttaactttt
ttgttgtttttatagcCCTTAGTATAGAGAGACTTTAAGAAGGTAAAAAA
CCcataccgtccgcacatactaAGCACCTATTTTTTCCtaagtaccttat
cggggaaaacttcgtcggggaaaagtcacgaaattttggacaagtgacga
atattttccccgacgaaaattttccccggccttaatgcgtttaccaacta
ccagcaagtgacgaatttttccctgacgaaaattttccccgacaaagTTT
TCCCCGCTAAGGTACCCTCTCTCCCCTGAGAGCAAGCTTTTCTAAAacac
gttcgttcgttcgttcactCATTCTATATTCAATACTTCAATTCTATTCT
CATGgtataaaaaatgttctttccaATTCGTACAGAGGCTGACATCATCT
CATTCGACGGTAACACTAGGCTGGAAATTAATGTTCCACCTAGCCTACGA
TCGACAACGAACAATCAGATCGCGTTGCGTTTCAAGACACGAGAATCAAA
TGGTCTTATCATGGCAGCGTGGTCGAAGAATGATCACCTTATGATTGAAT
TGAAAAACACCATCATTCAATTGAGTATTGATCTAGGAGGAGGTTGGTCT
TTTTTTGTCAAGCCATATATTTTGCAGATAGATACAGATTTTACGTAGAT
AACCCAGTAAGCTAGGACTTTTAGACTTCTATAGTTCTGTTGGAACTATA
GTCTATACTCATTATCAACATCCTCCGATCTAGGTCTAGGTCCCTATGTC
GGGAAACAAACAAACCCCCCTCCACAAATCGCGATCAGCCATTGTAATAC
CCATTTCATCGAAAATCGCTGTTTCCCATTTCTCCAAGGGATGTTAGTTT
TCTCGAGTTTCTTGGGACAGGACACCAAAGtaaaatatcggaaaaaattt
catttttgcatGCATAATACAATTATAGTTTCCATGGAATTTCATCCTCA
GTTGTTTTTGCTATTAAAACACCCAAAGTTACATTACTTGATCGAAACTT
CGATTCTGTGCCTCAAAATTCTGTGCCTCAAAATTGTTACAAACTGACAT
TGTTATTTACTTTGCAGGTTATCACGTGTTCCGAGTAAACGATCAATCAT
TCAGCGATGGGTTGTGGCATTTGATTGAGATCACACGAAAAGGACGAGAT
GTCTATTTAGTCGTTGATAGAAAGTAAGTGTTTGATGCTGGAGCATAACA
AGTGTTCTCCGCTTGcgtaaaaatctttcattcCTTGCAGAATTCAAATT
CCAAACAGCCATAACGGAGGCGAAACCACTTTTGGACTGCGTGATTTTTC
GATTCAATTTGTAAGTTTCTACATCTTTACATCTTAAACATTTGATCGTT
TCTGATAGCAAAAGCACATATCAtcatatacaccttttcgactgtagtcg
cgcggtcaggcgtgtgccacttttttttatctaattaccccctaaactcg
attcaatcctttttttgcacctttttctattgtctgtGGGCGCGAAAAAA
AGAcagggacggttttagggtggtaaaatggacaaaaaaatgcccgcacg
gcaattgttggctacggtcgaaaaggtgtattgcatCGGCCAGACTACTT
GTAACGTGGTGGGTATTTTATTATATTGTTGTTTTATACGGGTAACACTG
CACTGCAATACAATTCCTAGTTTTCAAATTCCGACTCTTGATTTCTTTTA
CTGCAGATATTTCATGGACCGTTCGACGAGTGGTCAATTCAGTAAATTCG
ATCTACGAGAGAAATTATACATTGGTGGCCACCCAGATGTCAAAGGTTTG
GGTGATATCAACAGTAATAGTGGAACTAACTTCAAAGGATGTATACAACA
AGTCTATTTCAATGAAGTAAGTTAGGTCACTGTTAATATGAATGCAGGAA
GGCGTCCCGGCTCGTCTTCCAAATCGCAAATGTTCTGCCCAGTTAAAAGA
TTGGCTTTGTTGCCTCACTGTTTTCCAAAAGTcatagtttcaaaaaaatt
agcgTCTCTATCAACTAACGATTGTAAACcgcagatttataaagcccaaa
gggctagatgtcttaagccatcgcaggcaaaaaaagatttaacatcggaa
aaaatatttttgctatcattttcgaaaacccgcgaagcttctggttcgag
cgctgaaattctattgtaatgtcacgtgacctaggtaggatttcctacct
aaccacggcacacttttcggCCGAAGTacaacatctagcccttcgggctt
tataaatctatgttgTAAACTCCACCCATATATAATTCCATGTTTACAAT
CCCTTTAACGAACGATACATAcagtacccagctggcacacaacgtcgttt
caacgtccatctaatgcttccaacgtccatataacgttagatggacgttg
aaacaacgttgtctACATTTACAACTTCCGGATTAgatgaatctttaacc
ttttaTCTTTATCTTTCATAGCTGAACATCATTTACAAAGTATTACACAC
AACAAATCAAgcttattatttgaacggtacAAAAATCACTAATTGTAGTG
TGACCAAGGCCAAGAAGATTGTGGTGAGAGGAAATAAAGGTAAGTGAAAC
CAGGGAGTTTGAGATTCATTTTTATCGATTATTTAATGTAGGATGGCTTG
TAAACGTTTTCATTCCCGGAGAAACATTCCTGGCGCATTTCCGGGATCTT
TccgctgtttttttttcacaccagcaaaaatagtattttttcgtGCGACA
GCGTAtggaaaaaacttcaaattcgCCTAACAAATTTAAGTAATTTTTCA
CCTACCCAGAGTCTCAGTCTCTTTCCGTTGTAAATtggttttaaaaaatg
tttttgaatgtaaaaaagAATTTGCAAGTGTtcaatagcgaggttaagca
cggctttattttgaccgtaaagtgcgataccgtaggcctgtacataactt
gccaaagcaaaccatgcaagtgaaatcttatgtacaggctCTACGATATC
GCATTGAGcggtctaaataaacacttgcCTAACCTCgctaattagttttt
aagaCACGTGAGATTTGCTTATAAAACACGTGTATCTAGCCGTAATTCTT
GGTGGAGAATTTCTCTAATGATAGAAAATCTTAATTATAGTTATTAAAGG
GGCAATTTACGCTTTGAAATAATGCACTTGATTCGAATCTAATGTAATGA
AATTTATAATTGATGAAACCATCATCTTATTTTATTGGCCCTCCTAAATG
AAAAAACCCTTAAAACTTGAGAAGTTGGTAAAAAGTTATCAGAAATGTCA
AATGATGTCAAAAGTCATTGCCTGTGAGAAAATTAACACAACGGCTTTGA
CGAAAATCCTTCGTGGTAAACTCCTGACTCCTGTTATATAGGCTTAAATA
GGTGCTGAGTATATGCAGCCAGTCAGGGCCTATACTTTAACCTTCCCCGA
CTCACTCTAAACAATAAACCCCTCCCCTAAGGTTCTGGATCCCCCCTTTT
TGGTTCTCATCTAGGGCACGAATGCCATGTATTTAAAGCCAGCCCTGGTA
CATCTCAGGTATATCGGGGCACTCTACAAATAGTTTGTTCAGTTATTcag
caatttttttatatttccagACAATAAAATCAGCGAGAGTGCCAAACCAA
GTGAAGAAAAATCTCCTACTGCTTCTTCAAATTCCAAggtaattaaattt
ttttcttatccTAAAGTATCCTAGAAacctaagctagtttgattcagtcg
ctatgataaatctgatggtaagttgtgactgaataacagtattccaaggc
aaacttaaaatccgtaaatataaaaaatctttaaaacgcCGAAAATGCTA
TATTGCCATTAGCTATCCTAACAGCGTTTCTTCCATAAATTGATATCATT
TCATTAAGTGCTCCTGGTATCATATGAGATCACTCAATTTTTACAGTCTT
ATACCGCCCAGTATTTTTAACACCGCCAGGTTAATAACATTGTTTTTATG
ATACATACAGGGGCCTCGGCTCCACTTTAAAAGTGATAGGACCATGATAT
ACCGACGAAGAAGGCgccatggttggcgccgacggggGGAGCAAAATTTG
GCTTgattagtaaatttttttttttactttgaaaaaatgtggtcggACCA
AGGCCCGACTGGCCCACTGATGCTACGGCGCCTGACATAATTTAAAAAAG
AGCCGAATATTTAGTTTTCCAAAATAAGAAGGAATATGAATTTGTAACTG
ACAGTTAATGGTTTACTTTCTAATTTGTTTTTCAGGTATCTAAAAAGCAC
GTCGATGACGAAAGCAAAACGTTAAGTAAAAATTCAGTCACGTGGATAGT
TGTTGGGTTAGTGTGCGGAACGCTTGTCTTAATCGTAACCGTTATCGTGA
TAGTACACAATGTCAAGCACCGATATAGCGGAGTGTTTTTATCCTCCCAC
GTTAAAGAACAATATCAAAAACAATTGACGCCCGATGGCGCAGGAACTTT
ATTGTTTCAACCAAGAAATGGAGGGCGGATTGTTATAGAACCACATCTGG
TGTAAACGAGGCGGAGAAGTAGCACCCTTACGCCCTTTATGCATGGGTAG
GCGGATTCAAAGATGAATTGTTGGAAGTAGTTGGCGATACTAAAGAATCC
TGAGGTTGACCAAAATTTGacaatcttttaaaatcatTGTGATTAACACT
TTTAGCCTACTTTGCTTAAATCCACACACTTGTGAACAGTAAAGCATTCA
ACATTATCACGACTCAGGTTTTGGACGTAGAAACTCTCAAGGGGTTTTAA
CAACACAAATTATTATACGGAAGCGGGATAACATATTGCCTATTGAAGAT
aatctaattcgaatttttctgaaattcgAACATTCTGGAATGTGCTTTGA
AATACTTCATGAAATCATTCTCTAATTCGGATCAGATTCTCTgttcttga
aaatcgaattcgaGACAGGCAGCTATCAGTTTGCTTAGGGCGAAATTGAT
ATGAAAACACAGCGTAAACACGGTACAATGATGTCTAACATCAATGACAA
AGGATATGTCACAAGTAActtgaaatataaaaaactcGAATATTTGAAGG
TTtggtttttataagattttgatCAGTGAAACATTGAATATGAAGTTGAA
GTGGAGAAGAGACACAAGCACCGACCAATCATTATATTGGAATTTGGAAA
ACAATTAATTgtgcaaaaatttcatttttaaagttgagttacatttattt
tcaatattcccAATTCAGATTTTAGTTATAAGCGTACCCACTCGAATACA
ACTTTTCGACCGTTACCGCCAATTACCGCGCGGAcaatttttgtccgttt
tacccaatgaagtataagcccgaagggctagaatcgaatctctaaccttt
ctcaggcaagaaaaagtgaagactTAAAATATGCgtcgtatttttgacga
cagagtTGATCtagcaatttttttgttttgatgtgatattttttttcgaa
atttagcatTAAATTTTAGTTCCAATCTGCCATTTGTGTAAAAATTAGGC
GGACCGTGTTAGGCCACGCAACTTTGGTAgaatttgttggcttcaaatcc
taccaaggagattcaattctagcccttcgggctta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037301XLOC_037301Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059227-exon-scaffold_320-1491911889:112886..113525TCONS_00059227-exon-scaffold_320-1491911889:112886..113525Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1510915933:112886..113525TCONS_00059227-exon-scaffold_320-1510915933:112886..113525Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1575043694:112886..113525TCONS_00059227-exon-scaffold_320-1575043694:112886..113525Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1491911889:115351..115565TCONS_00059227-exon-scaffold_320-1491911889:115351..115565Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1510915933:115351..115565TCONS_00059227-exon-scaffold_320-1510915933:115351..115565Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1575043694:115351..115565TCONS_00059227-exon-scaffold_320-1575043694:115351..115565Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1491911889:116171..116377TCONS_00059227-exon-scaffold_320-1491911889:116171..116377Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1510915933:116171..116377TCONS_00059227-exon-scaffold_320-1510915933:116171..116377Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1575043694:116171..116377TCONS_00059227-exon-scaffold_320-1575043694:116171..116377Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1491911889:116853..116958TCONS_00059227-exon-scaffold_320-1491911889:116853..116958Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1510915933:116853..116958TCONS_00059227-exon-scaffold_320-1510915933:116853..116958Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1575043694:116853..116958TCONS_00059227-exon-scaffold_320-1575043694:116853..116958Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1491911889:117492..117651TCONS_00059227-exon-scaffold_320-1491911889:117492..117651Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1510915933:117492..117651TCONS_00059227-exon-scaffold_320-1510915933:117492..117651Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1575043694:117492..117651TCONS_00059227-exon-scaffold_320-1575043694:117492..117651Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1491911889:118257..118374TCONS_00059227-exon-scaffold_320-1491911889:118257..118374Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1510915933:118257..118374TCONS_00059227-exon-scaffold_320-1510915933:118257..118374Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1575043694:118257..118374TCONS_00059227-exon-scaffold_320-1575043694:118257..118374Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1491911889:119406..119473TCONS_00059227-exon-scaffold_320-1491911889:119406..119473Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1510915933:119406..119473TCONS_00059227-exon-scaffold_320-1510915933:119406..119473Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1575043694:119406..119473TCONS_00059227-exon-scaffold_320-1575043694:119406..119473Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1491911889:120071..121420TCONS_00059227-exon-scaffold_320-1491911889:120071..121420Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1510915933:120071..121420TCONS_00059227-exon-scaffold_320-1510915933:120071..121420Clytia hemisphaericaexon
TCONS_00059227-exon-scaffold_320-1575043694:120071..121420TCONS_00059227-exon-scaffold_320-1575043694:120071..121420Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_320supercontigscaffold_320:112886..121420 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.361345	0.270894	0.363864	0.78951	0.525001	0.329899	0.885305	1.2433	6.39338	6.9886	0	0.253135	3.37707	1.73816	8.41917	12.0365	3.77908	5.44596	2.72041	1.94457	4.57852	6.42019	2.62194	0	0	0
Blast
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BLAST of TCONS_00059227 vs. Swiss-Prot (Human)
Match: NRX1A (Neurexin-1 OS=Homo sapiens GN=NRXN1 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.024e-37
Identity = 110/417 (26.38%), Postives = 196/417 (47.00%), Query Frame = 3 
Query:  204 KSFLQYKQWNMDQTGTLSFKFKTLNTYGLIL--------XXXXXXXXXXXXXXIAMKLIYGQLEVTIQMGADDYRSNRRVKLGSNLNDLEWHTVEIQRDADHRQVTHVRLDSEAQSLFNDGEHDRMFLNSGLFFGGLPQKIDNIVDGS--WE--LEPRLVGCIEEVKYKSGANETFTEGELLASDEVKPGC----MNACQENVCPNGGKCINYFTEYRCDCIGTGFTGPSCQKEADIISFDGNTRLEINVPPSLRSTTNNQIALRFKTRESNGLIMAAWSKN--DHLMIELKNTIIQLSIDLGGGYHVFRVNDQS------------FSDGLWHLIEITRKGRDVYLVVDRKYFMDRSTSGQFSKFD--------LREKLYIGGHPDVKGLGDINSNSGTNFKGCIQQVYFNELNII 1340
            +SF+   +WN  +TG++SF F+T    GLIL          D          + A++++ G L + + MG+   +    +K    +ND EW+ V+ QRD     ++   L +   +    GE + + L+  L+ GGLP+    +V  +  W   L    VGCI ++     + +     E+ ++  VKP C       C  N C N G C + +  Y CDC GTG+ G SC++EA ++S+DG+  ++I +P  +  T    ++LRF+++ + G++MA  S++  D L +EL    ++L+++L       R+N  S             +D  WH + + R+G+ + L VD +  M    +G  ++ +        + E+ Y+   P             +NF G +Q + FN +  I
Sbjct:  488 ESFISLPKWNAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIKIKALLK---KVNDGEWYHVDFQRDGRSGTISVNTLRTPYTA---PGESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSKETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMH-TEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNL----DCIRINCNSSKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVP-------------SNFIGHLQSLTFNGMAYI 880

HSP 2 Score: 105.531 bits (262), Expect = 6.802e-23
Identity = 96/381 (25.20%), Postives = 172/381 (45.14%), Query Frame = 3 
Query:  252 LSFKFKTLNTYGLILXXXXXXXXXXXXXXIAMKLIYGQLEVTIQMGADDYRSNRRVKLGSN--LNDLEWHTVEIQRDADHRQVTHVRLDSEAQSLFNDGEHDRMFLNSGLFFGGLPQKIDNIVDGSWELEPRLV-------GCIEEVKYKSGANETFTEGELLASDEVKPGC---MNACQENVCPNGGKCINYFTEYRCDCIGTGFTGPSCQKEADIISFD-GNTRLEINVPPSLR-STTNNQIALRFKTRESNGLIMAAWSKN---DHLMIELKNTIIQLSIDLGGGYHVFRVNDQSFSDGLWHLIEITRKGRDVYLVVDRKYFMDRSTSG-QFSKFDLREKLYIGGHPDVKGLGDINSNSGTNFKGCIQQVYFNELNII 1340
            L F+FKT +  GLILY+            I ++L+ G L     +G         +K  SN  LND +WH V I RD  +     V++D++  +    G  + + L S L+ GG+ ++       +++  P+LV       GC+  V       +  ++  L  + +++ GC      CQE+ C N G C+  +  + CDC  T F+GP C        F  G  ++    PP+ R ST  +++A+ F T +   +++   S +   D+L + +    I +  ++G        ++   +DG +H++  TR G +  L VD    ++R  +G Q + F+ +  + IGG              G  F+G +  +Y+N L ++
Sbjct:  929 LFFQFKTTSLDGLILYNSGDGNDF-----IVVELVKGYLHYVFDLG----NGANLIKGSSNKPLNDNQWHNVMISRDTSNLHT--VKIDTKITTQITAGARN-LDLKSDLYIGGVAKE-------TYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDA-LFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGK-----------EQGQPFQGQLSGLYYNGLKVL 1278

HSP 3 Score: 100.138 bits (248), Expect = 2.958e-21
Identity = 110/426 (25.82%), Postives = 179/426 (42.02%), Query Frame = 3 
Query:  189 FMDKNKSFLQYKQWNMDQTGTLSFKFKTLNTYGLILXXXXXXXXXXXXXXIAMKLIY---GQLEVTIQMGADDYRSNRRVKLGSNLNDLEWHTVEIQRDADHRQVTHVRLDSEAQSLFNDGEHDRMFLNSGLFFGGLPQKIDN-----IVDGSWELEPRLVGCIEEVKYKSGANETFTEGELLASDEVK-PGCMNACQEN------VCPNGGKCINYFTEYRCDCIGTGFTGPSCQ----------------------KEADIISFDGNTRLEINVPPSLRSTTNNQIALRFKTRESNGLIMAAWSKNDHLMIELKNTIIQLSIDLGGGYH---VFRVNDQSFSDGLWHLIEITRKGRD--------VYLVVDRKYFMDRSTSGQFSKFDLREKLYIGGHPDVKGLGDINSNSGTNFKGCIQQVYF 1322
            F      + ++ +WN      +SF+ KT +  GL+LY D     ++      ++LI    G+L+++  +   +  +   +   + +ND  WH+V I+R    R  T      EA+ +    +   M + SGLF GGLP ++        +    E EP   G I +V+  S        GE+   DE    G  + C+        VC NGG C     +  CDC  TGF G  C                       KE  I +F G+     ++  +   +++++I L FKT + NGL++      D++ + LKN  + L I+LG G     V  VN + F+D  WH +++TR  R         V + VD        T   ++     +  Y+GG P    L    S    NF GC+++V +
Sbjct:   33 FPGAEGQWTRFPKWNACCESEMSFQLKTRSARGLVLYFDDEGFCDF------LELILTRGGRLQLSFSIFCAEPAT---LLADTPVNDGAWHSVRIRRQ--FRNTTLFIDQVEAKWVEVKSKRRDMTVFSGLFVGGLPPELRAAALKLTLASVREREP-FKGWIRDVRVNSSQVLPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQEDNNVEGLAHLMMGDQGKSKGKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGK-FNDNAWHDVKVTRNLRQHSGIGHAMVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLP--GSPVSNNFMGCLKEVVY 443
The following BLAST results are available for this feature:
BLAST of TCONS_00059227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NRX1A8.024e-3726.38Neurexin-1 OS=Homo sapiens GN=NRXN1 PE=2 SV=1[more]
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