TCONS_00059218 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059218
Unique NameTCONS_00059218
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length418

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059218 ID=TCONS_00059218|Name=TCONS_00059218|organism=Clytia hemisphaerica|type=transcript|length=418bp
TTTGAAAGTTGCTATATGATCTACCTCATCGCAAAGTTCAAACGAAAATT
TGCTGTGTGACCTTTAAGTTTTAATACAAAATAATATCATTCTAAAGAAA
TTTCTCAACTTGTCATCATTTGTTTAAAGTCCAAGAAAAAAAAGTACCTT
GTGAAATATACACCTTGTTGCACAAAGATGGAgagcttttttgttgtttt
tttggactCTTAGTACACTGCATACTCTCCTCCGCTAGATCTTTTGTGAT
GTTGGATTTGAATATCGGTGTGATTTTAGATTTTCCCTCTTCGATATTTA
TATATCAACCCACATGTATGATAACTCATATTAAACGATTTTATGATGAG
TTTGCTAGTCttttttgtttgtaattgtAATCGATTGATCGAaccatttg
atttgaaataattttcct
Run BLAST on NCBI

transcript from alignment at scaffold_319:354322..354739

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059218 ID=TCONS_00059218|Name=TCONS_00059218|organism=Clytia hemisphaerica|type=transcript|length=418bp|location=Sequence derived from alignment at scaffold_319:354322..354739 (Clytia hemisphaerica)
aggaaaattatttcaaatcaaatggtTCGATCAATCGATTacaattacaa
acaaaaaaGACTAGCAAACTCATCATAAAATCGTTTAATATGAGTTATCA
TACATGTGGGTTGATATATAAATATCGAAGAGGGAAAATCTAAAATCACA
CCGATATTCAAATCCAACATCACAAAAGATCTAGCGGAGGAGAGTATGCA
GTGTACTAAGagtccaaaaaaacaacaaaaaagctcTCCATCTTTGTGCA
ACAAGGTGTATATTTCACAAGGTACTTTTTTTTCTTGGACTTTAAACAAA
TGATGACAAGTTGAGAAATTTCTTTAGAATGATATTATTTTGTATTAAAA
CTTAAAGGTCACACAGCAAATTTTCGTTTGAACTTTGCGATGAGGTAGAT
CATATAGCAACTTTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037295XLOC_037295Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059218-exon-scaffold_319-1491911889:354322..354739TCONS_00059218-exon-scaffold_319-1491911889:354322..354739Clytia hemisphaericaexon
TCONS_00059218-exon-scaffold_319-1510915933:354322..354739TCONS_00059218-exon-scaffold_319-1510915933:354322..354739Clytia hemisphaericaexon
TCONS_00059218-exon-scaffold_319-1575043694:354322..354739TCONS_00059218-exon-scaffold_319-1575043694:354322..354739Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_319supercontigscaffold_319:354322..354739 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.16975	0.331066	0	0	0.228917	0	0	0	0	0.177184	1.54782	0.226105	0.903163	1.6414	0.192779	0	0	0	0.541344	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059218 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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