TCONS_00059217 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059217
Unique NameTCONS_00059217
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059217 ID=TCONS_00059217|Name=TCONS_00059217|organism=Clytia hemisphaerica|type=transcript|length=582bp
GCGCTTCTTATTGGCTTCTTAGTTTTCAAAAGTCTCTTAGGAGATGTAGA
GTGAttacattttgagttttttggttGCCTTTTTGGTTGAGACAGGGTTC
GATTAGTCTGGTCGAGATTTTTCACAGCTTATCTTGTCCAATTCCTTGGT
TAACTCGAAGGCCTGATGCTGTGAGGATGATTAATATAGAATGCGTCTTA
AGAAGTCTTGCCGCTTTGATTTGTATTGGTTGTACATCTTTTTTATGCTG
ACTGATCAATGTAGCGGACTAAAGATGCGATAGTCCAGTGAAGCTCGACC
AATCATGTCTCGTTCTTGGAGTAGACTAATTTTGCAACAGTTTTCGGATG
GATGTTATCACGAAGAGACTGCAACTTCACATAGTTTTGTAAAACAAACC
GTTTGATTATTGTGTGCTCACCACCGAGATTTAGCCTAATAGTCGTTTGA
CGCTGAAAGCCTTTACTAGCTAGTAAAATAATCTACAGTCgacatacact
tttttctaagaaataagcAAGGCTAATGTTCGCCTCGTTgaattcgaaaa
tgaagaataaGAAGAATCGTATGAAATAAGGT
Run BLAST on NCBI

transcript from alignment at scaffold_319:351272..351853

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059217 ID=TCONS_00059217|Name=TCONS_00059217|organism=Clytia hemisphaerica|type=transcript|length=582bp|location=Sequence derived from alignment at scaffold_319:351272..351853 (Clytia hemisphaerica)
ACCTTATTTCATACGATTCTTCttattcttcattttcgaattcAACGAGG
CGAACATTAGCCTTgcttatttcttagaaaaaagtgtatgtcGACTGTAG
ATTATTTTACTAGCTAGTAAAGGCTTTCAGCGTCAAACGACTATTAGGCT
AAATCTCGGTGGTGAGCACACAATAATCAAACGGTTTGTTTTACAAAACT
ATGTGAAGTTGCAGTCTCTTCGTGATAACATCCATCCGAAAACTGTTGCA
AAATTAGTCTACTCCAAGAACGAGACATGATTGGTCGAGCTTCACTGGAC
TATCGCATCTTTAGTCCGCTACATTGATCAGTCAGCATAAAAAAGATGTA
CAACCAATACAAATCAAAGCGGCAAGACTTCTTAAGACGCATTCTATATT
AATCATCCTCACAGCATCAGGCCTTCGAGTTAACCAAGGAATTGGACAAG
ATAAGCTGTGAAAAATCTCGACCAGACTAATCGAACCCTGTCTCAACCAA
AAAGGCaaccaaaaaactcaaaatgtaaTCACTCTACATCTCCTAAGAGA
CTTTTGAAAACTAAGAAGCCAATAAGAAGCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037294XLOC_037294Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059217-exon-scaffold_319-1491911889:351272..351853TCONS_00059217-exon-scaffold_319-1491911889:351272..351853Clytia hemisphaericaexon
TCONS_00059217-exon-scaffold_319-1510915933:351272..351853TCONS_00059217-exon-scaffold_319-1510915933:351272..351853Clytia hemisphaericaexon
TCONS_00059217-exon-scaffold_319-1575043694:351272..351853TCONS_00059217-exon-scaffold_319-1575043694:351272..351853Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_319supercontigscaffold_319:351272..351853 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.185503	0	0.105361	0.128267	0.304076	0	0	0.240454	0.19856	0.289091	0.126692	3.03637	1.97081	1.83631	0.289801	0	0.805034	0.404436	0.31741	0.0919622	0	0.32717	0.198296	0.204241	0.18228	0.130421	0	0	0.215118
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059217 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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