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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059210 ID=TCONS_00059210|Name=TCONS_00059210|organism=Clytia hemisphaerica|type=transcript|length=1108bp
GATTGGCATAACCAACATTAAATCTGCAAACGTCAGCAAAATTGAGTACA
CGATATAAAACATACGATAACTAGAGATGTTCGGTGAATTTGCGTATTTA
CATAATGTTTTTGATGGATCAATTCTAATCTTCGATACGTCCACCAGGAA
ACATAATATGAACAGCGACGATAAAACAAACATTAAAACGgcgaaaataa
taacaaaatctttctcaaaaaatatatcACATCGTTTCTTCGGGAAATGA
GCATTGGTGTAGAGCAACAGTTTACTAACAGATGATAATATACAAAAGAA
CATGGTTAAAATCATGGATCCGAAACATACACCACCAGTCATCTTACAAA
GCAATAATCCAAATCTCCATTCAGCTTGTATCAAACAAGCAGCCATCAAT
GGCATACAAATGAGCGCCGCTATTAAATTAATTCCAGCTGAAATGAGTac
gaatttcaaaaatatggCGTGGGCGTGTGATTTGAAACAGTTGAGGGCGC
AAATGAAGGCGTTACCAATAAGAACAGCAGCACATACAGCAATAATGGCG
GATGCTTGGAATGATAAGAGAGTTGGATCTGCATCACTTTCCATTTCACC
CATTTCAATGTCGATATCAACTAACCCTTCACGTGGCATGGTAGTTAGTG
TTGTGAAAGTTTTCAAGTCTTTTCCTCTtggctaaaattcaaaatctttg
tttttccaAGCGAGTCTTAAAAATACTTCAGTTTTGTGTATTCCTTGACT
GATTTAAAGCGTTCAATCGATAGTCTTGACCAGTTCAATCGGTAGATTTA
ACCATAGATACAGAAGGATACCGTTGTCTTCTTTTTTGCGTTTCCTGCGT
TGATTAAATATATTGACGAAGCCAGACTATGTCGTTCTATGACTGcgtat
tttgataaatttgttagATGGATATTCGAGCTAACCAGACAAGAGTTGTT
TGATCAATGTCTTGTTGATGTTTCACGAAAAAATCCGATATTAACCAACC
ATATCATACACAAGAAAACAACTAGACCAGCGTTGGTGAAATCATGCTCA
ACACGAGTTGATAATATGGTTACCATGCCAACTAAAGCATATCGTGTTTG
AATGAAGC Run BLAST on NCBI protein sequence of TCONS_00059210-protein >TCONS_00059210-protein ID=TCONS_00059210-protein|Name=TCONS_00059210-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MPREGLVDIDIEMGEMESDADPTLLSFQASAIIAVCAAVLIGNAFICALN
CFKSHAHAIFLKFVLISAGINLIAALICMPLMAACLIQAEWRFGLLLCKM
TGGVCFGSMILTMFFCILSSVSKLLLYTNAHFPKKRCDIFFEKDFVIIFA
VLMFVLSSLFILCFLVDVSKIRIDPSKTLCKYANSPNISSYRMFYIVYSI
LLTFADLMLVMPI Run BLAST on NCBI transcript from alignment at scaffold_319:196498..197605 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059210 ID=TCONS_00059210|Name=TCONS_00059210|organism=Clytia hemisphaerica|type=transcript|length=1108bp|location=Sequence derived from alignment at scaffold_319:196498..197605 (Clytia hemisphaerica)
GCTTCATTCAAACACGATATGCTTTAGTTGGCATGGTAACCATATTATCA
ACTCGTGTTGAGCATGATTTCACCAACGCTGGTCTAGTTGTTTTCTTGTG
TATGATATGGTTGGTTAATATCGGATTTTTTCGTGAAACATCAACAAGAC
ATTGATCAAACAACTCTTGTCTGGTTAGCTCGAATATCCATctaacaaat
ttatcaaaatacgCAGTCATAGAACGACATAGTCTGGCTTCGTCAATATA
TTTAATCAACGCAGGAAACGCAAAAAAGAAGACAACGGTATCCTTCTGTA
TCTATGGTTAAATCTACCGATTGAACTGGTCAAGACTATCGATTGAACGC
TTTAAATCAGTCAAGGAATACACAAAACTGAAGTATTTTTAAGACTCGCT
tggaaaaacaaagattttgaattttagccaAGAGGAAAAGACTTGAAAAC
TTTCACAACACTAACTACCATGCCACGTGAAGGGTTAGTTGATATCGACA
TTGAAATGGGTGAAATGGAAAGTGATGCAGATCCAACTCTCTTATCATTC
CAAGCATCCGCCATTATTGCTGTATGTGCTGCTGTTCTTATTGGTAACGC
CTTCATTTGCGCCCTCAACTGTTTCAAATCACACGCCCACGccatatttt
tgaaattcgtACTCATTTCAGCTGGAATTAATTTAATAGCGGCGCTCATT
TGTATGCCATTGATGGCTGCTTGTTTGATACAAGCTGAATGGAGATTTGG
ATTATTGCTTTGTAAGATGACTGGTGGTGTATGTTTCGGATCCATGATTT
TAACCATGTTCTTTTGTATATTATCATCTGTTAGTAAACTGTTGCTCTAC
ACCAATGCTCATTTCCCGAAGAAACGATGTgatatattttttgagaaaga
ttttgttattattttcgcCGTTTTAATGTTTGTTTTATCGTCGCTGTTCA
TATTATGTTTCCTGGTGGACGTATCGAAGATTAGAATTGATCCATCAAAA
ACATTATGTAAATACGCAAATTCACCGAACATCTCTAGTTATCGTATGTT
TTATATCGTGTACTCAATTTTGCTGACGTTTGCAGATTTAATGTTGGTTA
TGCCAATC Coding sequence (CDS) from alignment at scaffold_319:196498..197605 >TCONS_00059210 ID=TCONS_00059210|Name=TCONS_00059210|organism=Clytia hemisphaerica|type=CDS|length=639bp|location=Sequence derived from alignment at scaffold_319:196498..197605 (Clytia hemisphaerica)
ATGCCACGTGAAGGGTTAGTTGATATCGACATTGAAATGGGTGAAATGGA
AAGTGATGCAGATCCAACTCTCTTATCATTCCAAGCATCCGCCATTATTG
CTGTATGTGCTGCTGTTCTTATTGGTAACGCCTTCATTTGCGCCCTCAAC
TGTTTCAAATCACACGCCCACGccatatttttgaaattcgtACTCATTTC
AGCTGGAATTAATTTAATAGCGGCGCTCATTTGTATGCCATTGATGGCTG
CTTGTTTGATACAAGCTGAATGGAGATTTGGATTATTGCTTTGTAAGATG
ACTGGTGGTGTATGTTTCGGATCCATGATTTTAACCATGTTCTTTTGTAT
ATTATCATCTGTTAGTAAACTGTTGCTCTACACCAATGCTCATTTCCCGA
AGAAACGATGTgatatattttttgagaaagattttgttattattttcgcC
GTTTTAATGTTTGTTTTATCGTCGCTGTTCATATTATGTTTCCTGGTGGA
CGTATCGAAGATTAGAATTGATCCATCAAAAACATTATGTAAATACGCAA
ATTCACCGAACATCTCTAGTTATCGTATGTTTTATATCGTGTACTCAATT
TTGCTGACGTTTGCAGATTTAATGTTGGTTATGCCAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059210-exon-scaffold_319-1491911889:196498..197605 | TCONS_00059210-exon-scaffold_319-1491911889:196498..197605 | Clytia hemisphaerica | exon |
| TCONS_00059210-exon-scaffold_319-1510915933:196498..197605 | TCONS_00059210-exon-scaffold_319-1510915933:196498..197605 | Clytia hemisphaerica | exon |
| TCONS_00059210-exon-scaffold_319-1575043694:196498..197605 | TCONS_00059210-exon-scaffold_319-1575043694:196498..197605 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_319 | supercontig | scaffold_319:196498..197605 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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