TCONS_00059202 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059202
Unique NameTCONS_00059202
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1935

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059202 ID=TCONS_00059202|Name=TCONS_00059202|organism=Clytia hemisphaerica|type=transcript|length=1935bp
GAGGAAACATATCACTCTTAAAGACAAAGATGAGAAGACACATTTGACAG
CCAACACTTCAAGGATTTCATCAACAAATGCTGTAAAAATGACATATCCA
AATCGTTTGAAAAACTATGCCGCTTGAACAAATCACCCTTGATTTATGca
cttgaaaatgaaaacgttGATGAAGTGTTCTTAAAACATATCCTCAGCTA
TTGTGAGGCTAAACACCTGATCAGCTGTAAATCATCTTGTGGATATGCCC
TTCAAGAATGCGATTCAAAGTCAGAGACACCATTCGTTAAAGCCATCAAG
TCTAAGGATACTTTTAAGTTGGATTGTATACTTAAGCAATTAAGTATTCT
ATTAGCAACGGAAGAAGCACAATCGATATCATGGTGCTATAAAGAGAACT
TTATATATCTCCTTATGAAATATGGAAGCACAAAGCAAATGGAAGAATTC
TTGAAACTAATacacaaaaaacattttaatcatGTTTGGTCAAAAGCTAA
AGAGAAACTTTGTCAGGATAATGATGATAATGTTGTTTTCCAAAATCAGG
ATAGTTGTTGGATGGCATTCGTTATTGCAGATTATTTTTCTTGCCAGCTG
ACAATCAGCCAATTAAAGCAGACTGAGAAAAATCAACTAAGGGATCAATT
ACAAGAAGAAATCCTTTGCAAACGCTTACTTGAAGGAATCAGAAAGGCAG
GTTTCGGTCTTTATGATGACAGTGAATTTATCCTTAAACCCTTTGTTTAC
AAAGGTGAAGAGTTGCTCAAAAAAATCTTGCAGAAGTATCCAGACATCAC
TGCTTCAGAGTTTATTACTAAAATATCGAAGTTGGGTAGAAAAGATATTA
CACTGCATTTGGAATCAtttgaaaagaagaaattagATCAACTGAACACT
GATCAAAGAAGTCAACTAACCTTTCGACTTGGAGCAGAATCATCTGGCAG
TCCTAACGAACCGCTGATATTTTGTGATCCATTTGGGCTGTCAGAACAAT
CAATGACAACTCCATTCAACTTAATAGAGAAAAAGCACCCTTCTGAACGT
ATGTTGGAATACCTTCAAAAGCAAGCGCCAGATTTGACTCTggaaaaaat
atacaaattacTTTTGGATTTGCAGGAATGTAAATTGGCTGCCATGACTG
TTGCAAAAATTGTTATCAAAAGAATTGATGTCAGTGGAAAATGATTTTTC
ACTGTTAAATTATTTAGTTAGTACAGTATTTGGATGTTAACTTTTTATAT
ATTGCGCTAGCAGGATATTCTAATTGTTGTCAATCAACTGACCATTGTTA
AAAAAACTCTTTTGTTTAACATTGACACTTTtcatgaatttaaaaaagag
cAAATTCAACTCCAATATTGTGGTACTTATAGCCATGATTGGGTTTTAAG
GataacttttcaactttttagttTATATATTTTAAGATAACTTCTTATAA
ATTGATTCTTTGCAATTTGAGTGATCGATACTGATGCAGAGCGAATTACT
CcattaaaagaaacaaaatcttttttatcaatacGGCTGGTTTCATGCAA
CATTGATGCAATCGTCAGTTGGattattagaaaaattaaaacgtAAACGT
TTTTTATTGAATTAAATAGAGATGCTTGACCTAATGTGTGTTACTTATGC
TTATAAAGATTACAATGAATACAATTCAcctgtttattttatttcaaatg
taTTAAAAATATATAGAACTATCATTAATCTGATTATTATAATGCTTGTA
TATAATTAAATataattaaattttcttaaataaaaatttgcatACTAAAA
ATCTTTGGAATTTTATATAAATGAATTTTATACACATTTTATATCATCTT
AATTATCTTACAGTTTAGTTTAAATATGTATGCAATTTAACATTCAGTAT
TGTAAATGTCAGTATTTAGAAATTATAAAATGTTG
Run BLAST on NCBI

transcript from alignment at scaffold_319:379760..382321-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059202 ID=TCONS_00059202|Name=TCONS_00059202|organism=Clytia hemisphaerica|type=transcript|length=2562bp|location=Sequence derived from alignment at scaffold_319:379760..382321- (Clytia hemisphaerica)
GAGGAAACATATCACTCTTAAAGACAAAGATGAGAAGGTACTTCTACATT
ACATTGCAGAAGACCTAGATTTAACTTGTTGTTTCTTTGAAATTTTGAAA
AACCTTGGTTGTGATTATTTTGTTGATCAATATGATGTCAGTAATGGATG
TAACCTCGAACAGAAAACACCGGTTCATTATGCTATTCAGAGAAGGAATA
TTTTTCTTCTTAAAAAACTAGGCAGTGAACACATTGACTTGTGTGCAAAT
GACGAGAGTTGCTTAAATTATCTTCATTATTTTTGTATACATTACTGTAA
AGACACATTTGACAGCCAACACTTCAAGGATTTCATCAACAAATGCTGTA
AAAATGACATATCCAAATCGTTTGAAAAACTATGCCGCTTGAACAAATCA
CCCTTGATTTATGCACTTGAAAATGAAAACGTTGATGAAGTGTTCTTAAA
ACATATCCTCAGCTATTGTGAGGCTAAACACCTGATCAGCTGTAAATCAT
CTTGTGGATATGCCCTTCAAGAATGCGATTCAAAGTCAGAGACACCATTC
GTTAAAGCCATCAAGTCTAAGGATACTTTTAAGTTGGATTGTATACTTAA
GCAATTAAGTATTCTATTAGCAACGGAAGAAGCACAATCGATATCATGGT
GCTATAAAGAGAACTTTATATATCTCCTTATGAAATATGGAAGCACAAAG
CAAATGGAAGAATTCTTGAAACTAATACACAAAAAACATTTTAATCATGT
TTGGTCAAAAGCTAAAGAGAAACTTTGTCAGGATAATGATGATAATGTTG
TTTTCCAAAATCAGGATAGTTGTTGGATGGCATTCGTTATTGCAGGTAAG
ACCTGACATTTTAAAAGAGCACATTTGAATCAAGTGAAAAGAGAAAAACA
TTTAAGATGCACTCACAAAGATAGCAGCTATCTTCTGAGCCTCCATGAGA
ATGAGCTATAGTGGAATTAATAATGAGTTGTTTCATATTTGTTGTCAATT
TACTTTTTATTTTCTTTTGCTACCTGTTGCTACACCTGCACAATCTAGAT
TCACCTAAAACTTTTTATTTTTTTGTATTAATCCAGTACAGCTCAGGATA
AAATTCTTCAACCTTTTCTCATAGTAATACCTTGAAATTCATCAGACTTA
AAAAGAGGTAAAAAGTGTTATAAGAGTGAATTAACCGATCAATTTTCTTT
TTACCAGATTATTTTTCTTGCCAGCTGACAATCAGCCAATTAAAGCAGAC
TGAGAAAAATCAACTAAGGGATCAATTACAAGAAGAAATCCTTTGCAAAC
GCTTACTTGAAGGAATCAGAAAGGCAGGTTTCGGTCTTTATGATGACAGT
GAATTTATCCTTAAACCCTTTGTTTACAAAGGTGAAGAGTTGCTCAAAAA
AATCTTGCAGAAGTATCCAGACATCACTGCTTCAGAGTTTATTACTAAAA
TATCGAAGTTGGGTAGAAAAGATATTACACTGCATTTGGAATCATTTGAA
AAGAAGAAATTAGATCAACTGAACACTGATCAAAGAAGTCAACTAACCTT
TCGACTTGGAGCAGAATCATCTGGCAGTCCTAACGAACCGCTGATATTTT
GTGATCCATTTGGGCTGTCAGAACAATCAATGACAACTCCATTCAACTTA
ATAGAGAAAAAGCACCCTTCTGAACGTATGTTGGAATACCTTCAAAAGCA
AGCGCCAGATTTGACTCTGGAAAAAATATACAAATTACTTTTGGATTTGC
AGGAATGTAAATTGGCTGCCATGACTGTTGCAAAAATTGTTATCAAAAGA
ATTGATGTCAGTGGAAAATGATTTTTCACTGTTAAATTATTTAGTTAGTA
CAGTATTTGGATGTTAACTTTTTATATATTGCGCTAGCAGGATATTCTAA
TTGTTGTCAATCAACTGACCATTGTTAAAAAAACTCTTTTGTTTAACATT
GACACTTTTCATGAATTTAAAAAAGAGCAAATTCAACTCCAATATTGTGG
TACTTATAGCCATGATTGGGTTTTAAGGATAACTTTTCAACTTTTTAGTT
TATATATTTTAAGATAACTTCTTATAAATTGATTCTTTGCAATTTGAGTG
ATCGATACTGATGCAGAGCGAATTACTCCATTAAAAGAAACAAAATCTTT
TTTATCAATACGGCTGGTTTCATGCAACATTGATGCAATCGTCAGTTGGA
TTATTAGAAAAATTAAAACGTAAACGTTTTTTATTGAATTAAATAGAGAT
GCTTGACCTAATGTGTGTTACTTATGCTTATAAAGATTACAATGAATACA
ATTCACCTGTTTATTTTATTTCAAATGTATTAAAAATATATAGAACTATC
ATTAATCTGATTATTATAATGCTTGTATATAATTAAATATAATTAAATTT
TCTTAAATAAAAATTTGCATACTAAAAATCTTTGGAATTTTATATAAATG
AATTTTATACACATTTTATATCATCTTAATTATCTTACAGTTTAGTTTAA
ATATGTATGCAATTTAACATTCAGTATTGTAAATGTCAGTATTTAGAAAT
TATAAAATGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037281XLOC_037281Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059202-exon-scaffold_319-1575043694:382285..382321TCONS_00059202-exon-scaffold_319-1575043694:382285..382321Clytia hemisphaericaexon
TCONS_00059202-exon-scaffold_319-1575043694:381477..382019TCONS_00059202-exon-scaffold_319-1575043694:381477..382019Clytia hemisphaericaexon
TCONS_00059202-exon-scaffold_319-1575043694:379760..381114TCONS_00059202-exon-scaffold_319-1575043694:379760..381114Clytia hemisphaericaexon
TCONS_00059202-exon-scaffold_319-1510915933:382285..382321TCONS_00059202-exon-scaffold_319-1510915933:382285..382321Clytia hemisphaericaexon
TCONS_00059202-exon-scaffold_319-1510915933:381477..382019TCONS_00059202-exon-scaffold_319-1510915933:381477..382019Clytia hemisphaericaexon
TCONS_00059202-exon-scaffold_319-1510915933:379760..381114TCONS_00059202-exon-scaffold_319-1510915933:379760..381114Clytia hemisphaericaexon
TCONS_00059202-exon-scaffold_319-1491911889:382285..382321TCONS_00059202-exon-scaffold_319-1491911889:382285..382321Clytia hemisphaericaexon
TCONS_00059202-exon-scaffold_319-1491911889:381477..382019TCONS_00059202-exon-scaffold_319-1491911889:381477..382019Clytia hemisphaericaexon
TCONS_00059202-exon-scaffold_319-1491911889:379760..381114TCONS_00059202-exon-scaffold_319-1491911889:379760..381114Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_319supercontigscaffold_319:379760..382321 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0374899	0.162422	0	0	0	0	0.776943	1.88474	1.74151	0.856909	0.955487	0.628977	8.60027e-09	0.699486	0.942435	0.443073	2.00083	0.454879	0	0	0.399679	0.353184	0.941155	0	0	0.162776	0.178611	0.150527
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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