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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059201 ID=TCONS_00059201|Name=TCONS_00059201|organism=Clytia hemisphaerica|type=transcript|length=5128bpRun BLAST on NCBI protein sequence of TCONS_00059201-protein >TCONS_00059201-protein ID=TCONS_00059201-protein|Name=TCONS_00059201-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1360bp MDCTSHCKLKAHGSYLTSIITSETDGEVFKKASNEKCNNSSKVLDHLGRNRun BLAST on NCBI transcript from alignment at scaffold_319:357704..379218- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059201 ID=TCONS_00059201|Name=TCONS_00059201|organism=Clytia hemisphaerica|type=transcript|length=21515bp|location=Sequence derived from alignment at scaffold_319:357704..379218- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_319:357704..379218- >TCONS_00059201 ID=TCONS_00059201|Name=TCONS_00059201|organism=Clytia hemisphaerica|type=CDS|length=89826bp|location=Sequence derived from alignment at scaffold_319:357704..379218- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059201 vs. Swiss-Prot (Human)
Match: IBTK (Inhibitor of Bruton tyrosine kinase OS=Homo sapiens GN=IBTK PE=1 SV=3) HSP 1 Score: 309.301 bits (791), Expect = 1.223e-85 Identity = 220/686 (32.07%), Postives = 339/686 (49.42%), Query Frame = 3
Query: 54 DCTSHCKLKAHGSYLTSIITSETDGEVFKKASNEKCNNSSKVLDHLGRNVFHVATSCGNIDVLEYLIEEQNVSKSNLQSKDKESGWTPLHRALYYGNIHCAVYLHKVLKEWKPFDSEGLSPLDLVTQDSPRIXXXXXRMTKLGIVVVAYEAELQSELTIQIDDIIEMADRPSGITGWAIGKNRETGHEGFYPQHFVEEIKQKVEKETKAWYTPQNTVHLWGNNVNFTLGLGDSKSRNTAELNETLFHSQQSVKDVVVTKFHTVYLTNEGNVFTCXXXXXXXXXXXQEQTLLYPEPIKTLSCYHCTIIAASNHHTVVVTELGDVYTFGLNDFHQLGLSPAPISASTPQLVYNKNFKGKQIMGAAAGRFHTVIHSDKEVYVFGYNGGQMGLL---KSEEIVITPKQVSRLLRNKTEVKMVAASDGATLCLYEDGEVYILQDFVCRKIKDIGSFLPGTKIRMTGGELQLKRSDFEKPEPLQ--------IAILQSTGVVFVWRSSTRQFRECYWQGCKLPVYSNVVDIALGKH-LMITTDTGQVYFGHFSNRTQPGQGAKPEDTHSSATPRSSRNKVEVVESGQKLSLTELNDRTKKARFDHEEIMLERVPLVYRSVACFCDPKSRTYAVIQFDPITEMKRRPEVSPSTLESDLRRLVEKADLYDDLHDLVIESKNKTCFPAHRFVLQL 2075
DCTS C+ H + S++T ++ ++ K + C N++ + D GRN H+ +SCG VL++LI++ +L KDKESGWT L H +++ + W + K G+ + + E S L D++ M DRP+ + + KN T V+ WG+N NFTLG G S++ EL + S +K VV+ KFH+V+L+ +G V+TCGHGPGGRLGHG EQT L P ++ L+ ++C+ +AA+ HTVV+TE G VYTFGLN FHQLG+ P P S + P+ + K KG+ I+G AAGRFHTV+ + + VY G NGGQ+G L E+ V P+QVS L + +VAASDGAT+C+ G++Y+L D+ C+K+ L K+ ++GG ++ K PE L+ I + G VF WRS ++C W P + DIAL ++ ++ T G+ + G + R S K E++ + S + + E I LE++ +R+V+ DP +A++Q DP T + P VS S+ + +L+ +AD D +HD+ + N+ FPAH+++L +
Sbjct: 7 DCTSKCRSLKHALDVLSVVTKGSENQI-KAFLSSHCYNAATIKDVFGRNALHLVSSCGKKGVLDWLIQK----GVDLLVKDKESGWTAL---------HRSIFYGHIDCVWS--------------------------LLKHGVSLYIQDKEGLSAL-----DLV-MKDRPTHV----VFKN-----------------------------TDPTDVYTWGDNTNFTLGHGSQNSKHHPELVDLFSRSGIYIKQVVLCKFHSVFLSQKGQVYTCGHGPGGRLGHGDEQTCLVPRLVEGLNGHNCSQVAAAKDHTVVLTEDGCVYTFGLNIFHQLGIIPPPSSCNVPRQIQAKYLKGRTIIGVAAGRFHTVLWTREAVYTMGLNGGQLGCLLDPNGEKCVTAPRQVSALHHKDIALSLVAASDGATVCVTTRGDIYLLADYQCKKMA--SKQLNLKKVLVSGGHMEYKVD----PEHLKENGGQKICILAMDGAGRVFCWRSVNSSLKQCRW---AYPRQVFISDIALNRNEILFVTQDGEGFRGRWFEEK-----------------RKSSEKKEILSNLHNSSSDVSYVSDINSVY--ERIRLEKLTFAHRAVSVSTDPSGCNFAILQSDPKTSLYEIPAVSSSSFFEEFGKLLREADEMDSIHDVTFQVGNRL-FPAHKYILAV 584 HSP 2 Score: 162.54 bits (410), Expect = 6.202e-40 Identity = 83/176 (47.16%), Postives = 123/176 (69.89%), Query Frame = 3
Query: 2589 DVTIESVDQKIFKCHKCILTARSEYFQNMLNFSWMECXXXXXXXXIKIPVPSNILDVVINFLYTGNIKHLAASNDVTFIGEVLVCADQLLILRLKELCEVCLSEKVTLKNVVDIFQFSCMYNAEQLRVFTSDYISMNMPYFLDAKLLENVPNEDLEILSDEYKFLVADMDERVITP 3116
DVT++SVD K F CHKC+L AR EYF +ML+ SW+E SS + +++P+ S+IL V++++LYT + S +V FI VLV ADQLLI RLKE+CEV L+EK+TLKN + +F+ MY+A+QL++ +I +NM L+A+ L+ + + L+ LS+ Y+ ++ MD RVITP
Sbjct: 769 DVTMKSVDGKEFPCHKCVLCARLEYFHSMLSSSWIEASSCAA---LEMPIHSDILKVILDYLYTDEAVVIKESQNVDFICSVLVVADQLLITRLKEICEVALTEKLTLKNAAMLLEFAAMYSAKQLKLSCLQFIGLNMAALLEARSLDVLSDGVLKDLSEFYRKMIPAMDRRVITP 941 The following BLAST results are available for this feature:
BLAST of TCONS_00059201 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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