TCONS_00059193 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059193
Unique NameTCONS_00059193
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length468

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059193 ID=TCONS_00059193|Name=TCONS_00059193|organism=Clytia hemisphaerica|type=transcript|length=468bp
TGAAAAAGGCCTACTTAAAACCCAATATTTCAGACAATACATTTATTAGC
AACGGAGATTAGTGTAAAAGTGTTTCTTGTCCTGAAACTGTGCCTCTTTA
AtcaattctttttatttcttttgaaaaatgaaattgtgacATGATTATTT
GCTATAGGTTATTGAAGTATCATCAGAAGAAGATTTATTAAGTCCAGAGA
CATCAGAAAGTGACGACCAAGAAGAGGATTTAACTTTTCTTGGCTCAGAT
TCAACACAAACAAATGATCAGGTAACAGAATGTTGTATTTGTATGCGTTC
AATAAAATCCCACAGCAAAGTCTTTGCTATGAAATGTGGCCATATGGCAG
GTGGAAAATGTCTTAGTCAATGGTTTGAACAAGACAAAAGGTGTCCTGTT
TGTAGAAACATCGTTGAAGCAAAGGATGTAATACGTTTGTATCCGGCTTA
AGGAGAAGCAAGTTTTCA
Run BLAST on NCBI

transcript from alignment at scaffold_319:276353..279925-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059193 ID=TCONS_00059193|Name=TCONS_00059193|organism=Clytia hemisphaerica|type=transcript|length=3573bp|location=Sequence derived from alignment at scaffold_319:276353..279925- (Clytia hemisphaerica)
TGAAAAAGGCCTACTTAAAACCCAATATTTCAGACAATACATTTATTAGC
AACGGAGATTAGTGTAAAAGTGTTTCTTGTCCTGAAACTGTGCCTCTTTA
ATCAATTCTTTTTATTTCTTTTGAAAAATGAAATTGTGACATGATTATTT
GCTATAGGTTATTGAAGTATCATCAGAAGAAGATTTATTAAGTCCAGAGA
CATCAGAAAGTGACGACCAAGAAGAGGTTTTTTATAAATTACTTTAATCT
TTTGAAATTTGGCTACTCTTAGGTGCCAAATAAACGGGGGAGGTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGGGGAT
AGTGGGAAAAAAAAAAACACAAAGAATAAACGGCGGGGCCTAATTACCGG
GGGGTTGGAAAATGGATTTTTAAAAACCCTAAAAAGGGTCAAAATAGACT
AAATTTAGGCTTTTAGAGTAAAACAAGGAACTTTCCTTTTGGTAGCTGGG
AATTTTTTCAAAAATTAATAAACGGGGGGTCCTAATAGGGTCCAGGGGGG
GTGGGGGTGGAAAAAAATCGAAAAATTAACAAGCGGGGCGCCCGTTTATT
TGGCACCTAAGAGTACATATCTTATTACAAAACTTTTCTCCTGTGCCACC
TCTTTATACTTAACCAATTTACTATCTAAAATGCTCTGACTCGTGATCTT
TAAATAGTGGGATAACTTTTATAGTTAAAAAAGGTCCACACGATTGCCCA
TGGGAGTGTCTCACGAGTTTTGGGAAAAAAATCTGCAAAAAACAAGATTT
TAGGGGTCAATCATGCTTCATTGATGTTTAAATGATGATATAATACTTCG
GATCATTTTTTCTTCCTAATGATAATGCACACTCACAGTGAGCAAAATTT
ATGAACATAATTTTGAAGGCTTGAAGAGCAAGATGGAAATGCAGAAGGAA
ACAAGCACTTTTAAAAAAATTCAAATTGNTTTCGGATCATTTTTTCTTAT
TAATGATAATGCACACTCACAGTGAGCAAACTTTATGAACATAATTTTGA
AGGCTTGAAGAGCAAGATGGAAATGCAGAAGGAAACAAGCACTTTTAAAA
AAATTCAAATTGTAGGTGAAAGGTATTTCGATAGCTATTATTTTATCATA
GTGCATATGCGTATCTTTCTGTATGTCTTTCTTCATCTGTATTCCCCAAG
CAAATTTTGGTCTATTACATTTCAGGATTTAACTTTTCTTGGCTCAGATT
CAACACAAACAAATGATCAGGTATCTTTTCTCTCCACTCTTTACTTGATG
AAGGCTGAAGGGATTGGAGATTTTTAAAACGTTTTAGTCAGGTGGGAGTT
CAAACAATTTGGGGTAACCCTTTGCAATCCGGGTTCAAAATTTACAGGTG
TGGTGGTGGGTTCTGAGACTTTGGAAATTTCTTTCAGTATCCAAATATTT
TTTTGAAATAAATTTTTCTTAAATCAAGATGAAAAAATCTTTATAAAGCA
TCAAAGCATGCCATGAAATTAAAAAGTCTTCATTAAAGGTATTTTTTTAT
GGAAAGGTCAGAAGATGCTGTGGCGACAATATCTCAGAAATGCCCACGTA
TGCCTAGCCTGGTATTAGTAAGCACATGCTTAGTAGCACTGTTTCCATTT
TTAAGGTGGGGTTTTGAGGATTTTATAAAGTTAAGTATGGCTAGTCAAGC
AGGTTGGCTGGTGGTCTTTAGGTGTAAAATTTTAAAGGGTCGTCTGATGG
GGGATGCTTTAATGTTTTGTACTTATAAAGAAAGATTATGAGTAATTACT
ATGTACTTTTCCATAAACCACCTTTGTTATGTGCAGTTTTGTTGTTTTAT
GCTCAGTTTTGTATTCTGTGCACTTTTGTAATTTTTCTGTGCATTTCTTT
GATTTCTGCGCACTCTTGTAATTTTTCTGCACACTTTTGTAATTTTGAGA
TGCACACTTTTGTAATCAAGTAGCTGCGCACTTTTGTAACTTTGACAAAA
AATCAACCAAATTTTAACTTTGAAATAGTAGACTAAAATCCTAGACAACA
AAGTTAAGCCTGCAAGATCGCAAATTATATCAAACTGTAAAGTTATACTT
ACAATGGTTTATTGGCTCACTGACGTAAAGATTTATGTTAACGGAGTTAA
ATCGAGTTAATCCGAGTTTCGAGTTTTGAAATGTGGCATAAGCCAGATAT
TCAAATCAGTTATTAGAAACCATCTTAAATTCAATCTTACCTCTTTAATG
AATCAACAAAGCTCAATGATGATGCCACTTTTAGTTACTGAGAAGTGAAA
AAAACAACACAGTCCATCAAAAATATCAAAAACGTATCTGTTTTAGGTAC
AACTCAGAACAACTCGGACTAACTCTTCATTGTAAATATGACTTATTTGT
GATATTTTCAGTATAATATGTAAAGTACCTGAAAGTACTGTGATCTATAA
ATCATATAAAAATTAAGTAAAGTGCTTTTAAAAAGCTTTTTAAGTATCCT
TGACAAAGGTCAATCACAAAGAAGACAAATCCGGAAAGAAATGTTGGATA
AAAATGTTCGACATTTTTAGTGGATTGAGTCTCCCTACCCAAAGATTAAT
TCTGCAATATACACGAGCTTTTAACAAACATAATTATATAATCATAAAGC
AAAATATTGTTTTATGTTTCATATTTTAAATTTCAATCATAAAACTTTTT
AGGTAACAGAATGTTGTATTTGTATGCGTTCAATAAAATCCCACAGCAAA
GTCTTTGCTATGAAATGTGGCCATATGGCAGGTGGAAAGTAGGTAGAATT
CTTAACATTATTCTGACAATTTATATCTGCAGTATTTTTAATGCTCACTT
TTTTGTATTATGTCAATTGCCCACAATATTAGGATATCTAATCCAAAATC
GAGAATAATTAACCATGAATAGTTTTTGACTCTATAAAAATTGTTTTCAA
TGATCCTTTCAATAATAAGGCTCTAATTTTTCCTGGTTAGATGTGGGGAA
AATATTTGTAACAGACGTATCGCAACTTCAAATAATAATAATTACTTTTA
AAATCTTATCTCTTAGATGTCTTAGTCAATGGTTTGAACAAGACAAAAGG
TGTCCTGTTTGTAGAAACATCGTTGAAGCAAAGGATGTAATACGTTTGTA
TCCGGCTTAAGGTAGCAGTGTTTTCAAATTTGCTATAATATTTTGTTGGT
CCAAGTCCATCAGCCTCCTAATATAGATTTGAGATAGAATCCTCGGGAGA
TTAAATTATCGAGGTCAAAGTCACCAAAAACTTGAATAGGTCTTTAAAGA
TAGCTATAATGTTTTGTTTTTTTTCAAATTAACCATTCTTTCTTTTAATC
ATAACAACTACCTTAGAAACGGTCAGAACAAAACAAAGATTCTAAATTCT
ATAGCATTTATATCCTCTGAAAATGATTATAAATGTTTCATTTCGTCTAT
TTTTTAGGAGAAGCAAGTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037276XLOC_037276Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059193-exon-scaffold_319-1575043694:279700..279925TCONS_00059193-exon-scaffold_319-1575043694:279700..279925Clytia hemisphaericaexon
TCONS_00059193-exon-scaffold_319-1575043694:278556..278600TCONS_00059193-exon-scaffold_319-1575043694:278556..278600Clytia hemisphaericaexon
TCONS_00059193-exon-scaffold_319-1575043694:277038..277123TCONS_00059193-exon-scaffold_319-1575043694:277038..277123Clytia hemisphaericaexon
TCONS_00059193-exon-scaffold_319-1575043694:276665..276759TCONS_00059193-exon-scaffold_319-1575043694:276665..276759Clytia hemisphaericaexon
TCONS_00059193-exon-scaffold_319-1575043694:276353..276368TCONS_00059193-exon-scaffold_319-1575043694:276353..276368Clytia hemisphaericaexon
TCONS_00059193-exon-scaffold_319-1510915933:279700..279925TCONS_00059193-exon-scaffold_319-1510915933:279700..279925Clytia hemisphaericaexon
TCONS_00059193-exon-scaffold_319-1510915933:278556..278600TCONS_00059193-exon-scaffold_319-1510915933:278556..278600Clytia hemisphaericaexon
TCONS_00059193-exon-scaffold_319-1510915933:277038..277123TCONS_00059193-exon-scaffold_319-1510915933:277038..277123Clytia hemisphaericaexon
TCONS_00059193-exon-scaffold_319-1510915933:276665..276759TCONS_00059193-exon-scaffold_319-1510915933:276665..276759Clytia hemisphaericaexon
TCONS_00059193-exon-scaffold_319-1510915933:276353..276368TCONS_00059193-exon-scaffold_319-1510915933:276353..276368Clytia hemisphaericaexon
TCONS_00059193-exon-scaffold_319-1491911889:279700..279925TCONS_00059193-exon-scaffold_319-1491911889:279700..279925Clytia hemisphaericaexon
TCONS_00059193-exon-scaffold_319-1491911889:278556..278600TCONS_00059193-exon-scaffold_319-1491911889:278556..278600Clytia hemisphaericaexon
TCONS_00059193-exon-scaffold_319-1491911889:277038..277123TCONS_00059193-exon-scaffold_319-1491911889:277038..277123Clytia hemisphaericaexon
TCONS_00059193-exon-scaffold_319-1491911889:276665..276759TCONS_00059193-exon-scaffold_319-1491911889:276665..276759Clytia hemisphaericaexon
TCONS_00059193-exon-scaffold_319-1491911889:276353..276368TCONS_00059193-exon-scaffold_319-1491911889:276353..276368Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_319supercontigscaffold_319:276353..279925 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.13698	0	0	0	0	0.583888	0	0	0	0	0	0.0912277	0	0	1.91646	1.58831	0.30849	0.306841	0.291225	0	0.13244	0	0	0	0	0	0	0	0.304074	0.154901
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059193 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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