TCONS_00059179 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00059179
Unique Name	TCONS_00059179
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	990

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_319:14171..18784-

transcript sequence

>TCONS_00059179 ID=TCONS_00059179|Name=TCONS_00059179|organism=Clytia hemisphaerica|type=transcript|length=990bp
TGACTGAATGTGGATTTGGAGCTGACATTGGGATGgagaaatttttcaac
atcAAATGCAGATACAGCGgACTTCTACCATCATGTGTGGTACTTGTAGC
GACAGTTCGTGCTCTCAAGATGCATGGCGGTGGTCCTAAAGTTGTTGCTG
GTTCACCGTTACCTGAAGCTTATACAACCGAGAACATCGAACTTGTGGAG
AAAGGCTTCTGTAACTTACGTAAACAAATCGAAAATGCGCTCTGCTTTGG
TGTACCTGTTGTAGTTGCAGTCAATAAATTCCATACTGACACAGATGGTG
AGATTAACAAAATGATCAGCCTTTCCAAAGAAGCAGGAGCTTTTGATGCT
GTCCTTTGTACTCATTATGCTGAAGGAGGTCAAGGTGCTGTTAATTTGTC
CCAAGCAGTTATTAAAGCGTCCGAAGAAAAAACGAATTTCCGATTTCTGT
ACGATTTGAAGcTTCCTTTGGAAGagaaaattgaaatcattgccaAGAGA
ATTTATGGTGCAGATGGCGTCTCATTCTCTGATCAAGCAAAAGAAAGTTT
GGCGCGCTATACTAAACAAgGTTTCAGTGAACTACCGATCTGTATGGCAA
AGACGCATTTGTCATTGTCTGATAACCCTGAACTGAAAGGCGCTCCCACA
GgCTTTACTCTCCCTATTCGTGACGTCAGAGCAAGTGTTGGTGCAGGCTT
CGTCTTTCCACTGGTGGGAACTatgaGTACGATGCCAGGTTTACCAACAC
GTCCATGTTTTTATGACATCGACCTCGATCCCGATACCGAAGAAGTTCAA
GGTCTCATGTAAAAAATGACACCGAACTAGACTGACTGAAACTGCtgaac
atttttttcaagattttattattgtagattttcatttttgtatcactttt
ttttttaatacataGAAATTTAGTAGTATTTTATATATCTTTCACCTTAA
ATGATTTacacacttttttcaaataaaattcataTTCTTG

Run BLAST on NCBI

transcript from alignment at scaffold_319:14171..18784-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00059179 ID=TCONS_00059179|Name=TCONS_00059179|organism=Clytia hemisphaerica|type=transcript|length=4614bp|location=Sequence derived from alignment at scaffold_319:14171..18784- (Clytia hemisphaerica)
TGACTGAATGTGGATTTGGAGCTGACATTGGGATGGAGAAATTTTTCAAC
ATCAAATGCAGATACAGCGGTTTGTATTTAGAATGTCTTTCGAGTTTCAT
GCTTTATTGGGAGAAAGGATTTTCTTTATTTCCAAGATACAAGCTGAGTT
ACTGCAAGTGTGGTTTTTATTACCTCCTTTTCATTTTTCTAGAGAAAACA
TAAGTTTCTTAAAAAGCTCAGTTTTCCTAGAGTCTGTCAATACTGCTTTA
TGAACTTATAGTTGATACGAGACACGAAAAACGATGAAATATAACTATTT
AAGAAAGCTTGATATATTCTTGATGTACTTTTTTTCTTTATCAGGACTTC
TACCATCATGTGTGGTACTTGTAGCGACAGTTCGTGCTCTCAAGATGCAT
GGCGGTGGTCCTAAAGTGAGACGAACTTTATTTTAGCCCTTAAAACAAGC
GTTCGAAAAAACTTTTTCATCTGAAAATTCGAAATAAAGTTTCTCCTTTG
TGATTAAAGTAGAGATAGCGTTAAATGTCTTAACTATGAACCCCTGAAAA
TTTGGAGGATTACCAAATATACTAATGATCTCAGTAACCAATACACTTTT
CAACAAACATGATCCTCAAACCAATTATTCTATAGGTTGTTGCTGGTTCA
CCGTTACCTGAAGCTTATACAACCGAGGTAAGTCCCAGTTATGAAAATAT
TCCAGACATAAAATTTTGTCTGTGCCGTCAGTAAACATTTATTTCTTTTG
TATAAAAAGAAAATTTGATGAAAGGGGTTGTATTCCATGTTCTTCAATTT
CTTTGCATTGAAGCATGAGAATAAGAGTGTTATTAAAATCTCTACCAATA
TTACTCCTTGCATTTGATTTCTTATTATAAAGTCTTTAAAAAAATCAAAA
TCTCAGCTTCAAAATCAGTTCTACTGATCATGTTTTTTCTCTTTCGTATT
TTTAGAACATCGAACTTGTGGAGAAAGGCTTCTGTAACTTACGTAAACAA
ATCGAAAATGCGCTCTGCTTTGGTGTACCTGTTGTAGTTGCAGTCAATAA
ATTCCAGTATGTTGGTCTAAAAAATGGAATATATCTAGCATTGTTTCTCT
TTTCATTGTTATCAAATGAAGTTCTGTTTTTTATTGTGTCAGAGCTTGTA
ATCTACTAAACTTTGTTTAATAGTCCTGCCAGTTGGTTCACTCGGTAGAG
CATTGGCAATCCAAGGGTTGTGGATTCGATCCCCTGTCAGCGCCAACTCA
GCGAAGTAGTAGCTTAGATTGGGTAGTCTATCTGGGGTATAAGTAACTTG
GAGCTGATAGTGGCGCTCCACTTCAGGATTCCATTTCCCAGTACAAGTGC
AAATAGAAAAGGGAGTGGACTACTGGTAGGTTATCTAGACGACCATGCTA
TGTTTTATATACTAGGTATATAAAGTGAAGGGAAGGAGAAGTAAAATAAT
AAATAAGGTTATTTTCGTTTGAGTCTAACGAATTAGAAAATAACTTACCT
TACTGAAGAGTAAGATTTATGTAAATCTTCAATTTTTCTCTTTCTTGATT
TCAGTACTGACACAGATGGTGAGATTAACAAAATGATCAGCCTTTCCAAA
GAAGCAGGAGCTTTTGATGCTGTCCTTTGTACTCATTATGCTGAAGGAGG
TTCGTCTTCGTTTTTTCGTTCAGTAACAGTTTTTAAATGGTTATTAATTG
AACCTATAGAACAAAATTATAACTCCAACACAAACAAGCATGTTTTTTTA
ATTTTCATCCTCATCTCACTCACTCTTCATTTTTTTTCTACATTTTTTTG
TGAATTTTTGTTTCCTATTCCTCCTTCGGCCATGTATCATTTTCGGGCGA
TGAATGACATGTATTTTTCCTCTTCTTTTAATTAGTTTTTCATTTTCACG
TTCTTTCCAAAACTTGAATTCTGTTCACTTTGATTATAGGTCAAGGTGCT
GTTAATTTGTCCCAAGCAGTTATTAAAGCGTCCGAAGAAAAAACGAATTT
CCGATTTCTGTACGATTTGAAGGTAACTCAATTAAAAATTCATTGATCTA
CAATAAATACCGACAACGGCTTAGTCTATTTGAGTTCAATTGCGGAAATC
TCAAACATTTATTTTGGTACAGCCTATAGCGGTCATTTTTTCTGTATTGA
AAGATGTATTTTCCATATAAAAACCTAACTTTTTTTTCATAAATTTAGCT
TCCTTTGGAAGAGAAAATTGAAATCATTGCCAAGAGAATTTATGGTGCAG
ATGGCGTCTCATTCTCTGATCAAGCAAAAGAAAGTTTGGCGCGCTATACT
AAACAAGTAAGTCTTGAATTACTCGATCTTTTATAAATTCAAATATATAA
GAATATGAATTTTGGCTCAATCCCATATTCACGTTTATAAACGGCTAAGA
AAATGCTCTCCTAAGCCAATTATTCAATAAAGTCAGCATATTAAGAACAT
TTTTAAAGAATGTAGCCTGAATACCGCGTGAAAATTAAATCAGCCTAAAT
TTTAAGGTAAACAACATTGTGAAATTGATTATTTTTTTCGAGCTTATGAA
TGCCGTTCTTAGAGGACGATGATTTCTTACAGCTCCAGATTAATACTGTA
AACATTTTTTTTTGTTTTGCAGGGTTTCAGTGAACTACCGATCTGTATGG
CAAAGACGCATTTGTCATTGTCTGATAACCCTGAACTGAAAGGCGCTCCC
ACAGGTAAGCTTGTCATGTCTTCAGTCGATCGATTAAATGTTAATTAGTT
AATTGGTTCACGTCTATTTATGAAAATATTCAAACCAAAATAGGTTGGGA
GTACTAATACTCTGATTGTAGGGGGGGGGTTAGCAGGGAAGTTGGTACTC
TGGAAGAAAATCTATAAAATGAGGGGGGGGTCAATATAAAGTAATTTTTC
CCAAAAACCCCAAGGAAAATGAAGGTTTTGGTACTTTTTCAGGAAAATTT
CATAAATGGGGTGGGGGGTTAGTCATTATAAAACGGTATTGGGATGATTT
TTTCCGAATAATTGCAAAGTGACCCCCCTACAATGAAGCACAGAAGAGTC
CCACACTTATGGCGTCTTTTGCCTCCGTGACCTTGTTTTCATGACGATCT
AAAAATATTTTTTCCAGGCTTTACTCTCCCTATTCGTGACGTCAGAGCAA
GTGTTGGTGCAGGCTTCGTCTTTCCACTGGTGGGAACTGTAAGTCCCTTT
TTTGCTTTTTCTCCGGAAAAATGCTACCCTGTTGACCCATCATGTCAATT
CATATTTACCAATCATTGACTGGTCATGGCCAAGAAAATTAGAAATGTTT
TCGGATTATTCGCCTATTGCATTATGGTGTTACAACATAACTAAAGCAAG
CTTAGAGGTTTTTGCGTTTTTATTTCATTGTTGCATTATTGTCACACAAA
ATATCTTTCTACTTATAGAAATGGTCTGACACAGTACTTTTTGATGATAT
AACCTAAACAATGGATCTAGACTATTTCGACTGATTTTTTTTTATTAGAT
GAGTACGATGCCAGGTTTACCAACACGTCCATGTTTTTATGACATCGACC
TCGATCCCGATACCGAAGAAGTTCAAGGTCTCATGTAAAAAATGACACCG
AACTAGACTGACTGAAACTGCTGAACATTTTTTTCAAGATTTTATTATTG
TAGATTTTCATTTTTGTATCACTTTTTTTTTTAATACATAGAAATTTAGT
AGTATTTTATATATCTTTCACCTTAAATGATTTACACACTTTTTTCAAAT
AAAATTCATATTCTTGGATAAATCATTTTGAGTTCTTCATCGCCAAAACA
TTCGCAGATAGTTACGTTTTTCTCAATGTCTTTTTCAGGTAATTTCTGAA
AACTTTCAATTGTTCTTGCTCAATTTAAACATCAAGAAAATTTTCTTCGC
TCAATAGTTATCGATTCTTTAATTTTTCCACTATCACAGCGTTTTCTTTT
TAATTTCATTTCAATTTAGAAAATCTGGTAAAATTGATTGTAAATATTAA
ATTGTTTTCTAGAAATATTGAAACATCGAACCTTACATCTGTTTTATACG
GTGGCCCAAAAGGGTCAACGAATCTTTTTCGTAGCCATCATGTCAATTCA
TATTTACCAATCATTGACTGGTCATGGCCAAGAAAATTAGAAATGTTTTC
GGATTATTCGCCTATTGCATTATGGTGTTACAACATAACTAAAGCAAGCT
TAGAGGTTTTTGCGTTTTTATTTCATTGTTGCATTATTGTCACACAAAAT
ATCTTTCTACTTATAGAAATGGTCTGACACAGTACTTTTTGATGATATAA
CCTAAACAATGGATCTAGACTATTTCGACTGATTTTTTTTTATTAGATGA
GTACGATGCCAGGTTTACCAACACGTCCATGTTTTTATGACATCGACCTC
GATCCCGATACCGAAGAAGTTCAAGGTCTCATGTAAAAAATGACACCGAA
CTAGACTGACTGAAACTGCTGAACATTTTTTTCAAGATTTTATTATTGTA
GATTTTCATTTTTGTATCACTTTTTTTTTTAATACATAGAAATTTAGTAG
TATTTTATATATCTTTCACCTTAAATGATTTACACACTTTTTTCAAATAA
AATTCATATTCTTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037271	XLOC_037271	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_319	supercontig	scaffold_319:14171..18784 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.96127	3.393	3.82845	3.36275	0.329596	0.608476	0.665861	2.261	5.74624	2.87967	3.73819	3.37958	10.4282	7.2356	9.54124	8.06463	12.392	2.61812	8.18185	7.66634	0.243944	4.48188	4.26244	0.869678	1.55312	0.785437	3.63876	0.931927	0.969945	0.743991

Blast

[Close]

BLAST of TCONS_00059179 vs. Swiss-Prot (Human)
Match: C1TC (C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo sapiens GN=MTHFD1 PE=1 SV=3)

HSP 1 Score: 400.593 bits (1028), Expect = 2.620e-131
Identity = 194/268 (72.39%), Postives = 225/268 (83.96%), Query Frame = 3

Query:    3 TECGFGADIGMEKFFNIKCRYSGLLPSCVVLVATVRALKMHGGGPKVVAGSPLPEAYTTENIELVEKGFCNLRKQIENALCFGVPVVVAVNKFHTDTDGEINKMISLSKEAGAFDAVLCTHYAEGGQGAVNLSQAVIKASEEKTNFRFLYDLKLPLEEKIEIIAKRIYGADGVSFSDQAKESLARYTKQGFSELPICMAKTHLSLSDNPELKGAPTGFTLPIRDVRASVGAGFVFPLVGTMSTMPGLPTRPCFYDIDLDPDTEEVQGL 806
            TE GFGADIGMEKFFNIKCRYSGL P  VVLVATVRALKMHGGGP V AG PLP+AY  EN+ELVEKGF NL+KQIENA  FG+PVVVAVN F TDT+ E++ +  LS+E GAFDAV CTH+AEGG+GA+ L+QAV +A++  ++F+ LYDLKLP+E+KI IIA++IYGAD +    +A+     YTKQGF  LPICMAKTHLSLS NPE KG PTGF LPIRD+RASVGAGF++PLVGTMSTMPGLPTRPCFYDIDLDP+TE+V GL
Sbjct:  667 TEAGFGADIGMEKFFNIKCRYSGLCPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIQENLELVEKGFSNLKKQIENARMFGIPVVVAVNAFKTDTESELDLISRLSREHGAFDAVKCTHWAEGGKGALALAQAVQRAAQAPSSFQLLYDLKLPVEDKIRIIAQKIYGADDIELLPEAQHKAEVYTKQGFGNLPICMAKTHLSLSHNPEQKGVPTGFILPIRDIRASVGAGFLYPLVGTMSTMPGLPTRPCFYDIDLDPETEQVNGL 934

The following BLAST results are available for this feature:

BLAST of TCONS_00059179 vs. Swiss-Prot (Human)

BLAST of TCONS_00059179 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
C1TC	2.620e-131	72.39	C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo...	[more]

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TCONS_00059179 (transcript) - C. hemisphaerica