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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059173 ID=TCONS_00059173|Name=TCONS_00059173|organism=Clytia hemisphaerica|type=transcript|length=983bp
AAACACTAAACAAGTATAAGCTCGCACTTTTCATACAACTTAAAACAGTG
GCTATGTGCTGTaaacattcaaattttaaactcaaaaaggaGAGATGAGG
TTGCTTACACTTTTTATATCGTGCGTTCTCGTTCTGCAAGTTTGCCCTTA
TCGACCAGCTAATAATGACGAATTAGACGAACTATTGGATGAGTTTGACA
CTAAGCAAGAAGATCAAGTCAACAAAAGACATTACCACAGGCAAAGAAAT
ATCTTAGATGACGATGATGAAAACGAAATTGATTACGATTTGGATGACTT
TGTTtctgatgaagaagaagatgatgaCCCTGATAATTACTCGCAGCATT
TTAACGCTAACCATAGAAGTGATTTTGACTCCAATGCTGAAGATGAGTTT
GAGAATGATGGAAAACGAAGACAACCCTTTGAAGAACAGCATCAAGATCT
TAAGAGCAAAAGTCATTCCAAGAAACAAATCATCAAACTAGACGAAATAA
AAACATCCACTCTACCACCAATAACAGCCAAACCAACCACTAAAGCGCCG
CCAACAACCACTACACCACCACCCACAACAACTCGACAACCTACTACAAC
TAACACCCAACCTTCACCAAAGACAGTCCCTATCGCCACCAGTGAGCCAT
CATCTGCCAACCGCAAAAGACCAATGTACAATCGACGTTATCGACTTCAA
CTCTTATTGAAAAGATTACGCTCACTCCGACGCATGCGTGAACGTACGTC
TCAAAGACAccataagaaatattttggcagaTATCTGAAAAAGTACCACC
CCTTGGAAATCCTTCAACGTTACGGATGTCACCGAATATCTTGCGTTCGC
CATCACTCTAGCCTCTGTATCTGTAGAGATAGACGACATTAAGCTTCAAT
ATTAACTTAGTTATTACAGTAAACTTGCAATCTTTTGTTGAACCGTTGTA
GACTATGTTAATTTcctgaaatttcaaaagttt Run BLAST on NCBI protein sequence of TCONS_00059173-protein >TCONS_00059173-protein ID=TCONS_00059173-protein|Name=TCONS_00059173-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MRLLTLFISCVLVLQVCPYRPANNDELDELLDEFDTKQEDQVNKRHYHRQ
RNILDDDDENEIDYDLDDFVSDEEEDDDPDNYSQHFNANHRSDFDSNAED
EFENDGKRRQPFEEQHQDLKSKSHSKKQIIKLDEIKTSTLPPITAKPTTK
APPTTTTPPPTTTRQPTTTNTQPSPKTVPIATSEPSSANRKRPMYNRRYR
LQLLLKRLRSLRRMRERTSQRHHKKYFGRYLKKYHPLEILQRYGCHRISC
VRHHSSLCICRDRRH Run BLAST on NCBI transcript from alignment at scaffold_319:312109..315059+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059173 ID=TCONS_00059173|Name=TCONS_00059173|organism=Clytia hemisphaerica|type=transcript|length=2951bp|location=Sequence derived from alignment at scaffold_319:312109..315059+ (Clytia hemisphaerica)
AAACACTAAACAAGTATAAGCTCGCACTTTTCATACAACTTAAAACAGTG
GCTATGTGCTGTaaacattcaaattttaaactcaaaaaggaGAGATGAGG
TTGCTTACACTTTTTATATCGTGCGTTCTCGTTCTGCAAGGTTTGTAAGT
TCTCTTCTTCGTTCCTACCATTTCACACTGCACAGAGTGTATAGCTCTTC
CATTTCACACTGCACAGAGTGGATAGCTCTTCCATCCTGACAGAATATAT
TCACAAAAGACTCGATCaaccttttcaagaaaaaatttgaatgggggttg
aggatataacattttttggaaatttacccccaagACATTGTAACTTTTGA
CCCCCagacaagcattagttgaccccctATACACTCAAAATTACctccaa
acagagcaagtttaccccccggaGAGGGCaagttttgtagatttttcacc
aCCCCcacccccggacactatatccccCCCATGTActaacattttctgga
agagcccaatcaaCCTTTTCAGAAGTTATGTGCTGTAGTTTTGAAGAGAG
AGCACATATTGGTGTATTCTTGCAGGAAATGGCGCGAATGCATTTTGTGG
CTAAGTTTTTAtgtattttcgaaggaaaataaTCGAGAAGAGAAGAATAA
TTGTGTATTTTTGTACAGTAGTTAAAGTTCGTAAACATTTTTGATAGAGT
GTTTATGAATTTTCTAGTAAATACCATCGGTATCTTTTTATAGAAAGTGA
TTTATGTTTTTTCCTAAGGGAAATAGTTTACAGAAAAGAATGGGATGtca
attttttagcaaaaatattaagaatattttgaacGTTTCAAGAACGGAGA
AATTTTTGTATGTTTCGTTGGAAAAAATATTAGAGTGattgtttattttc
taagaaaatgATCTCAGAACAGAGAAAGGGTTATGTTCTTTGTAGTAAAA
TGACCAAGAACATATTTGATGGAGAGTGTATTatgtattttctaaggaaa
aactttaaaaaataggTAGAAGGCTTTAGTGTTGTTCCTGATAAATTGAT
CAAGATATTTTTGAAGGAACAATTTtcgtgtatttttcaaggaaaattta
aCAAGGGCAAGGGCTGTGTATTATTGTAGAAAATGACAAATGCATTATTC
GATAAATAATGCTTTTGGTATTGTCTGAGAAAATAATCATTCCAATAAAA
TACCGCGATTGGAGATTGGAGAGTCTATGCCCGATTATTCGCCTCTATCT
AGGTTATATCAAATGGCATATGGGACGTGATGCCCCTAGGTCCCTTACTG
GTAGTATCCAGTCAAGAACTAGCGTGACTTAGTGTTGTACACTTTCTCTG
GAATGGCCGATAAAGATTCCACAGAACATAGGGGAAGTGTATTTTCTTGT
AGGGAAATGaccaaaaattcaagaaaatatatTATGTGTACCGAATGAGC
CAATGGAAACTTCAGCCGAACTACACACTTTTTTGTAAGCAACTGCAATT
TTTGAGTCAGTGCTGGAGTTGCTTAGTATTCAAGCTAGTCTTCTTAACAT
TCAGGCCACCCCTAAtgttataccatatttatgcttattgggtgAAAAGC
TTTTGTTTGACATGGTTAtgtagattatctaaaaagttcttactttacga
gatagtgCAAAAAGGGCTAATAAGCCCTCGATccttagcaacctggttgc
ttattcaaaaaaaatgtgtatgccCATTGCTGAAACAGATCCTTACTTTG
TGATTTCTCTTCTTCAGTTTGCCCTTATCGACCAGCTAATAATGACGAAT
TAGACGAACTATTGGATGAGTTTGACACTAAGCAAGAAGATCAAGTCAAC
AAAAGACATTACCACAGGCAAAGAAATATCTTAGATGACGATGATGAAAA
CGAAATTGATTACGATTTGGATGACTTTGTTtctgatgaagaagaagatg
atgaCCCTGATAATTACTCGCAGCATTTTAACGCTAACCATAGAAGTGAT
TTTGACTCCAATGCTGAAGATGAGTTTGAGAATGATGGAAAACGAAGACA
ACCCTTTGAAGAACAGGTCTTTTTTAGTCCTTGATTTTCCTCGTTTCAAG
ATTGTCCACTACAAGTtgcaatttaaatttaaatgatTTCATTCTTAAAC
TTTTAGCATCAAGATCTTAAGAGCAAAAGTCATTCCAAGAAACAAATCAT
CAAACTAGACGAAATAAAAACATCCACTCTACCACCAATAACAGCCAAAC
CAACCACTAAAGCGCCGCCAACAACCACTACACCACCACCCACAACAACT
CGACAACCTACTACAACTAACACCCAACCTTCACCAAAGACAGTCCCTAT
CGCCACCAGTGAGCCATCATCTGCCAACCGCAAAAGACCAATGTACAATC
GACGTTATCGACTTCAACTCTTATTGAAAAGATTACGCTCACTCCGACGC
ATGCGTGAACGTACGTCTCAAAGACAccataagaaatattttggcagaTA
TCTGAAAAAGTACCACCCCTTGGGtaagtttttataaaacttcaataaaa
actttttcgaaGGCATCGGAATTATTTGCTCTCATATATTTAATGGAata
ttaagaatatttcttCATTCCAAACATTAGGTTAAACATTACTAAACTTT
TCATGCCGCTAAATATCTATGACGAAATAATTGgcagttctcaacttcag
ttttGCAGGTTCCTTATCATTTAATCCGTCATTTGAGTTGTgaaataaag
taaaattttctttttcctgtTTAGAAATCCTTCAACGTTACGGATGTCAC
CGAATATCTTGCGTTCGCCATCACTCTAGCCTCTGTATCTGTAGAGATAG
ACGACATTAAGCTTCAATATTAACTTAGTTATTACAGTAAACTTGCAATC
TTTTGTTGAACCGTTGTAGACTATGTTAATTTcctgaaatttcaaaagtt
t Coding sequence (CDS) from alignment at scaffold_319:312109..315059+ >TCONS_00059173 ID=TCONS_00059173|Name=TCONS_00059173|organism=Clytia hemisphaerica|type=CDS|length=3192bp|location=Sequence derived from alignment at scaffold_319:312109..315059+ (Clytia hemisphaerica)
ATGAGGTTGCTTACACTTTTTATATCGTGCGTTCTCGTTCTGCAAGTTTG
CCCTTATCGACCAGCTAATAATGACGAATTAGACGAACTATTGGATGAGT
TTGACACTAAGCAAGAAGATCAAGTCAACAAAAGACATTACCACAGGCAA
AGAAATATCTTAGATGACGATGATGAAAACGAAATTGATTACGATTTGGA
TGACTTTGTTtctgatgaagaagaagatgatgaCCCTGATAATTACTCGC
AGCATTTTAACGCTAACCATAGAAGTGATTTTGACTCCAATGCTGAAGAT
GAGTTTGAGAATGATGGAAAACGAAGACAACCCTTTGAAGAACAGCATCA
AGATCTTAAGAGCAAAAGTCATTCCAAGAAACAAATCATCAAACTAGACG
AAATAAAAACATCCACTCTACCACCAATAACAGCCAAACCAACCACTAAA
GCGCCGCCAACAACCACTACACCACCACCCACAACAACTCGACAACCTAC
TACAACTAACACCCAACCTTCACCAAAGACAGTCCCTATCGCCACCAGTG
AGCCATCATCTGCCAACCGCAAAAGACCAATGTACAATCGACGTTATCGA
CTTCAACTCTTATTGAAAAGATTACGCTCACTCCGACGCATGCGTGAACG
TACGTCTCAAAGACAccataagaaatattttggcagaTATCTGAAAAAGT
ACCACCCCTTGGAAATCCTTCAACGTTACGGATGTCACCGAATATCTTGC
GTTCGCCATCACTCTAGCCTCTGTATCTGTAGAGATAGACGACATTAAAT
GAGGTTGCTTACACTTTTTATATCGTGCGTTCTCGTTCTGCAAGTTTGCC
CTTATCGACCAGCTAATAATGACGAATTAGACGAACTATTGGATGAGTTT
GACACTAAGCAAGAAGATCAAGTCAACAAAAGACATTACCACAGGCAAAG
AAATATCTTAGATGACGATGATGAAAACGAAATTGATTACGATTTGGATG
ACTTTGTTtctgatgaagaagaagatgatgaCCCTGATAATTACTCGCAG
CATTTTAACGCTAACCATAGAAGTGATTTTGACTCCAATGCTGAAGATGA
GTTTGAGAATGATGGAAAACGAAGACAACCCTTTGAAGAACAGCATCAAG
ATCTTAAGAGCAAAAGTCATTCCAAGAAACAAATCATCAAACTAGACGAA
ATAAAAACATCCACTCTACCACCAATAACAGCCAAACCAACCACTAAAGC
GCCGCCAACAACCACTACACCACCACCCACAACAACTCGACAACCTACTA
CAACTAACACCCAACCTTCACCAAAGACAGTCCCTATCGCCACCAGTGAG
CCATCATCTGCCAACCGCAAAAGACCAATGTACAATCGACGTTATCGACT
TCAACTCTTATTGAAAAGATTACGCTCACTCCGACGCATGCGTGAACGTA
CGTCTCAAAGACAccataagaaatattttggcagaTATCTGAAAAAGTAC
CACCCCTTGGAAATCCTTCAACGTTACGGATGTCACCGAATATCTTGCGT
TCGCCATCACTCTAGCCTCTGTATCTGTAGAGATAGACGACATTAAATGA
GGTTGCTTACACTTTTTATATCGTGCGTTCTCGTTCTGCAAGTTTGCCCT
TATCGACCAGCTAATAATGACGAATTAGACGAACTATTGGATGAGTTTGA
CACTAAGCAAGAAGATCAAGTCAACAAAAGACATTACCACAGGCAAAGAA
ATATCTTAGATGACGATGATGAAAACGAAATTGATTACGATTTGGATGAC
TTTGTTtctgatgaagaagaagatgatgaCCCTGATAATTACTCGCAGCA
TTTTAACGCTAACCATAGAAGTGATTTTGACTCCAATGCTGAAGATGAGT
TTGAGAATGATGGAAAACGAAGACAACCCTTTGAAGAACAGCATCAAGAT
CTTAAGAGCAAAAGTCATTCCAAGAAACAAATCATCAAACTAGACGAAAT
AAAAACATCCACTCTACCACCAATAACAGCCAAACCAACCACTAAAGCGC
CGCCAACAACCACTACACCACCACCCACAACAACTCGACAACCTACTACA
ACTAACACCCAACCTTCACCAAAGACAGTCCCTATCGCCACCAGTGAGCC
ATCATCTGCCAACCGCAAAAGACCAATGTACAATCGACGTTATCGACTTC
AACTCTTATTGAAAAGATTACGCTCACTCCGACGCATGCGTGAACGTACG
TCTCAAAGACAccataagaaatattttggcagaTATCTGAAAAAGTACCA
CCCCTTGGAAATCCTTCAACGTTACGGATGTCACCGAATATCTTGCGTTC
GCCATCACTCTAGCCTCTGTATCTGTAGAGATAGACGACATTAAATGAGG
TTGCTTACACTTTTTATATCGTGCGTTCTCGTTCTGCAAGTTTGCCCTTA
TCGACCAGCTAATAATGACGAATTAGACGAACTATTGGATGAGTTTGACA
CTAAGCAAGAAGATCAAGTCAACAAAAGACATTACCACAGGCAAAGAAAT
ATCTTAGATGACGATGATGAAAACGAAATTGATTACGATTTGGATGACTT
TGTTtctgatgaagaagaagatgatgaCCCTGATAATTACTCGCAGCATT
TTAACGCTAACCATAGAAGTGATTTTGACTCCAATGCTGAAGATGAGTTT
GAGAATGATGGAAAACGAAGACAACCCTTTGAAGAACAGCATCAAGATCT
TAAGAGCAAAAGTCATTCCAAGAAACAAATCATCAAACTAGACGAAATAA
AAACATCCACTCTACCACCAATAACAGCCAAACCAACCACTAAAGCGCCG
CCAACAACCACTACACCACCACCCACAACAACTCGACAACCTACTACAAC
TAACACCCAACCTTCACCAAAGACAGTCCCTATCGCCACCAGTGAGCCAT
CATCTGCCAACCGCAAAAGACCAATGTACAATCGACGTTATCGACTTCAA
CTCTTATTGAAAAGATTACGCTCACTCCGACGCATGCGTGAACGTACGTC
TCAAAGACAccataagaaatattttggcagaTATCTGAAAAAGTACCACC
CCTTGGAAATCCTTCAACGTTACGGATGTCACCGAATATCTTGCGTTCGC
CATCACTCTAGCCTCTGTATCTGTAGAGATAGACGACATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059173-exon-scaffold_319-1491911889:312109..312248 | TCONS_00059173-exon-scaffold_319-1491911889:312109..312248 | Clytia hemisphaerica | exon |
| TCONS_00059173-exon-scaffold_319-1510915933:312109..312248 | TCONS_00059173-exon-scaffold_319-1510915933:312109..312248 | Clytia hemisphaerica | exon |
| TCONS_00059173-exon-scaffold_319-1575043694:312109..312248 | TCONS_00059173-exon-scaffold_319-1575043694:312109..312248 | Clytia hemisphaerica | exon |
| TCONS_00059173-exon-scaffold_319-1491911889:313876..314174 | TCONS_00059173-exon-scaffold_319-1491911889:313876..314174 | Clytia hemisphaerica | exon |
| TCONS_00059173-exon-scaffold_319-1510915933:313876..314174 | TCONS_00059173-exon-scaffold_319-1510915933:313876..314174 | Clytia hemisphaerica | exon |
| TCONS_00059173-exon-scaffold_319-1575043694:313876..314174 | TCONS_00059173-exon-scaffold_319-1575043694:313876..314174 | Clytia hemisphaerica | exon |
| TCONS_00059173-exon-scaffold_319-1491911889:314265..314631 | TCONS_00059173-exon-scaffold_319-1491911889:314265..314631 | Clytia hemisphaerica | exon |
| TCONS_00059173-exon-scaffold_319-1510915933:314265..314631 | TCONS_00059173-exon-scaffold_319-1510915933:314265..314631 | Clytia hemisphaerica | exon |
| TCONS_00059173-exon-scaffold_319-1575043694:314265..314631 | TCONS_00059173-exon-scaffold_319-1575043694:314265..314631 | Clytia hemisphaerica | exon |
| TCONS_00059173-exon-scaffold_319-1491911889:314883..315059 | TCONS_00059173-exon-scaffold_319-1491911889:314883..315059 | Clytia hemisphaerica | exon |
| TCONS_00059173-exon-scaffold_319-1510915933:314883..315059 | TCONS_00059173-exon-scaffold_319-1510915933:314883..315059 | Clytia hemisphaerica | exon |
| TCONS_00059173-exon-scaffold_319-1575043694:314883..315059 | TCONS_00059173-exon-scaffold_319-1575043694:314883..315059 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_319 | supercontig | scaffold_319:312109..315059 + |
Blast
The following BLAST results are available for this feature:
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