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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059170 ID=TCONS_00059170|Name=TCONS_00059170|organism=Clytia hemisphaerica|type=transcript|length=4311bpRun BLAST on NCBI protein sequence of TCONS_00059170-protein >TCONS_00059170-protein ID=TCONS_00059170-protein|Name=TCONS_00059170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=804bp MPSPRKKKLTVKVALTPSRSRSARIKANEVKKEEVDDEKPTTSRRNLQKKRun BLAST on NCBI transcript from alignment at scaffold_319:253715..265721+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059170 ID=TCONS_00059170|Name=TCONS_00059170|organism=Clytia hemisphaerica|type=transcript|length=12007bp|location=Sequence derived from alignment at scaffold_319:253715..265721+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_319:253715..265721+ >TCONS_00059170 ID=TCONS_00059170|Name=TCONS_00059170|organism=Clytia hemisphaerica|type=CDS|length=16905bp|location=Sequence derived from alignment at scaffold_319:253715..265721+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059170 vs. Swiss-Prot (Human)
Match: ZN567 (Zinc finger protein 567 OS=Homo sapiens GN=ZNF567 PE=1 SV=3) HSP 1 Score: 125.561 bits (314), Expect = 2.825e-29 Identity = 68/164 (41.46%), Postives = 91/164 (55.49%), Query Frame = 1
Query: 1057 CTHCKGKFRKED--VHEHMLTCPERYVQCRECGKILSNLQTLERHHKRFHLKIREVPCTLCDKMFIDEAAARKHLKTVHFKVKNFHCPHCDKSFSQRNKLTYHVRTHSGEKPYSCAECGRSFSLLWNLKTHLRTHTGEKPYACEICGRRFTQKQNMTSHLTTHR 1542
C HC FR + + H E+ +C ECGK S L H +R H + C C K F +A H K +H K++ CP C K+FS+++ L +H RTH+GEKPY C+ECG+ F NL H RTHTGEKPY C CG+ F+ K+N+ H TH+
Sbjct: 479 CPHCGKAFRMKSYLIDHHRTHTGEKPYECNECGKSFSQKTNLNLH-QRIHTGEKPYVCNECGKSFRQKATLTVHQK-IHTGQKSYECPQCGKAFSRKSYLIHHQRTHTGEKPYKCSECGKCFRQKTNLIVHQRTHTGEKPYVCNECGKSFSYKRNLIVHQRTHK 640 HSP 2 Score: 115.546 bits (288), Expect = 4.365e-26 Identity = 69/164 (42.07%), Postives = 88/164 (53.66%), Query Frame = 1
Query: 1057 CTHCKGKFRKE---DVHEHMLTCPERYVQCRECGKILSNLQTLERHHKRFHLKIREVPCTLCDKMFIDEAAARKHLKTVHFKVKNFHCPHCDKSFSQRNKLTYHVRTHSGEKPYSCAECGRSFSLLWNLKTHLRTHTGEKPYACEICGRRFTQKQNMTSHLTTH 1539
C C F ++ VH+ T + Y+ C ECGK S TL H K H + + C+ C K F + H +T H K++ CPHC K+F ++ L H RTH+GEKPY C ECG+SFS NL H R HTGEKPY C CG+ F QK +T H H
Sbjct: 395 CKECGKSFHQKANLTVHQRTHTGEKPYI-CNECGKSFSQKTTLALHEKT-HNEEKPYICSECGKSFRQKTTLVAHQRT-HTGEKSYECPHCGKAFRMKSYLIDHHRTHTGEKPYECNECGKSFSQKTNLNLHQRIHTGEKPYVCNECGKSFRQKATLTVHQKIH 555 HSP 3 Score: 113.62 bits (283), Expect = 1.762e-25 Identity = 75/192 (39.06%), Postives = 97/192 (50.52%), Query Frame = 1
Query: 1021 GIPEQRSPELATCTHCKGKFRKEDV---HEHMLTCPERYVQCRECGKILSNLQTLERHHKRFHLKIREVPCTLCDKMFIDEAAARKHLKTVHFKVKNFHCPHCDKSFSQRNKLTYHVRTHSGEKPYSCAECGRSFSLLWNLKTHLRTHTGEKPYACEICGRRFTQKQNMTSHLTTHRKPKP------DKSFR 1569
GI + P C C FR++ H+ T + +V C ECGK L+T H+R H + C C F ++ +H +T H K + C C KSF Q+ L+ H R H+GEKPY C ECG+SF NL H RTHTGEKPY C CG+ F+QK + H TH + KP KSFR
Sbjct: 273 GIHSEEKP--YQCHQCGNAFRRKSYLIDHQRTHTGEKPFV-CNECGKSF-RLKTALTDHQRTHTGEKSYECLQCRNAFRLKSHLIRHQRT-HTGEKPYECNDCGKSFRQKTTLSLHQRIHTGEKPYICKECGKSFHQKANLTVHQRTHTGEKPYICNECGKSFSQKTTLALHEKTHNEEKPYICSECGKSFR 459 HSP 4 Score: 108.227 bits (269), Expect = 9.849e-24 Identity = 70/180 (38.89%), Postives = 91/180 (50.56%), Query Frame = 1
Query: 1057 CTHCKGKFRKE---DVHEHMLTCPERYVQCRECGKILSNLQTLERHHKRFHLKIREVPCTLCDKMFIDEAAARKHLKTVHFKVKNFHCPHCDKSFSQRNKLTYHVRTHSGEKPYSCAECGRSFSLLWNLKTHLRTHTGEKPYACEICGRRFTQKQNMTSHLTTHRKPKP------DKSFR 1569
C C FR++ +H+ + T + Y+ C+ECGK L H +R H + C C K F + H KT H + K + C C KSF Q+ L H RTH+GEK Y C CG++F + L H RTHTGEKPY C CG+ F+QK N+ H H KP KSFR
Sbjct: 367 CNDCGKSFRQKTTLSLHQRIHTGEKPYI-CKECGKSFHQKANLTVH-QRTHTGEKPYICNECGKSFSQKTTLALHEKT-HNEEKPYICSECGKSFRQKTTLVAHQRTHTGEKSYECPHCGKAFRMKSYLIDHHRTHTGEKPYECNECGKSFSQKTNLNLHQRIHTGEKPYVCNECGKSFR 543 HSP 5 Score: 100.908 bits (250), Expect = 1.803e-21 Identity = 64/169 (37.87%), Postives = 84/169 (49.70%), Query Frame = 1
Query: 1057 CTHCKGKFRKED---VHEHMLTCPERYVQCRECGKILSNLQTLERHHKRFHLKIREVPCTLCDKMFIDEAAARKHLKTVHFKVKNFHCPHCDKSFSQRNKLTYHVRTHSGEKPYSCAECGRSFSLLWNLKTHLRTHTGEKPYACEICGRRFTQKQNMTSHLTTHRKPKP 1554
C+ C FR++ H+ T E+ +C CGK L HH R H + C C K F + H + +H K + C C KSF Q+ LT H + H+G+K Y C +CG++FS L H RTHTGEKPY C CG+ F QK N+ H TH KP
Sbjct: 451 CSECGKSFRQKTTLVAHQRTHT-GEKSYECPHCGKAFRMKSYLIDHH-RTHTGEKPYECNECGKSFSQKTNLNLHQR-IHTGEKPYVCNECGKSFRQKATLTVHQKIHTGQKSYECPQCGKAFSRKSYLIHHQRTHTGEKPYKCSECGKCFRQKTNLIVHQRTHTGEKP 616 HSP 6 Score: 99.3673 bits (246), Expect = 4.786e-21 Identity = 58/142 (40.85%), Postives = 73/142 (51.41%), Query Frame = 1
Query: 1135 CRECGKILSNLQTLERHHKRFHLKIREVPCTLCDKMFIDEAAARKHLKTVHFKVKNFHCPHCDKSFSQRNKLTYHVRTHSGEKPYSCAECGRSFSLLWNLKTHLRTHTGEKPYACEICGRRFTQKQNMTSHLTTHRKPKPDK 1560
C ECGK TL H +R H + C C K F ++ H +T H K + C C KSFSQ+ L H R H+GEKPY C ECG+SF L H + HTG+K Y C CG+ F++K + H TH KP K
Sbjct: 451 CSECGKSFRQKTTLVAH-QRTHTGEKSYECPHCGKAFRMKSYLIDHHRT-HTGEKPYECNECGKSFSQKTNLNLHQRIHTGEKPYVCNECGKSFRQKATLTVHQKIHTGQKSYECPQCGKAFSRKSYLIHHQRTHTGEKPYK 590 HSP 7 Score: 97.8265 bits (242), Expect = 1.522e-20 Identity = 67/182 (36.81%), Postives = 88/182 (48.35%), Query Frame = 1
Query: 1057 CTHCKGKFRKEDV---HEHMLTCPERY--VQCRECGKILSNLQTLERHHKRFHLKIREVPCTLCDKMFIDEAAARKHLKTVHFKVKNFHCPHCDKSFSQRNKLTYHVRTHSGEKPYSCAECGRSFSLLWNLKTHLRTHTGEKPYACEICGRRFTQKQNMTSHLTTHRK------PKPDKSFR 1569
C C FR + H+ T + Y +QCR ++ S+L H+R H + C C K F + H + +H K + C C KSF Q+ LT H RTH+GEKPY C ECG+SFS L H +TH EKPY C CG+ F QK + +H TH P K+FR
Sbjct: 311 CNECGKSFRLKTALTDHQRTHTGEKSYECLQCRNAFRLKSHLIR----HQRTHTGEKPYECNDCGKSFRQKTTLSLHQR-IHTGEKPYICKECGKSFHQKANLTVHQRTHTGEKPYICNECGKSFSQKTTLALHEKTHNEEKPYICSECGKSFRQKTTLVAHQRTHTGEKSYECPHCGKAFR 487 HSP 8 Score: 85.5001 bits (210), Expect = 1.177e-16 Identity = 55/139 (39.57%), Postives = 70/139 (50.36%), Query Frame = 1
Query: 1057 CTHCKGKFRKE---DVHEHMLTCPERYVQCRECGKILSNLQTLERHHKRFHLKIREVPCTLCDKMFIDEAAARKHLKTVHFKVKNFHCPHCDKSFSQRNKLTYHVRTHSGEKPYSCAECGRSFSLLWNLKTHLRTHTGE 1464
C C F ++ ++H+ + T + YV C ECGK TL H K H + C C K F ++ H +T H K + C C K F Q+ L H RTH+GEKPY C ECG+SFS NL H RTH GE
Sbjct: 507 CNECGKSFSQKTNLNLHQRIHTGEKPYV-CNECGKSFRQKATLTVHQK-IHTGQKSYECPQCGKAFSRKSYLIHHQRT-HTGEKPYKCSECGKCFRQKTNLIVHQRTHTGEKPYVCNECGKSFSYKRNLIVHQRTHKGE 642 The following BLAST results are available for this feature:
BLAST of TCONS_00059170 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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