TCONS_00059163 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059163
Unique NameTCONS_00059163
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059163 ID=TCONS_00059163|Name=TCONS_00059163|organism=Clytia hemisphaerica|type=transcript|length=1535bp
aagtcctgaatatgaaagattatttcaagagcatgaaattttggtttcta
aacgttttttataagaaacaaacggctaattttaatagatcgtcactatt
tgtgttctgaatgattgtttaatggtcatgatcacttagatatcaattat
atatgtgttaaatgcataaccaggtaggtccataaaattatcacttgttt
ttttttcatttacagCTTCGCATATAAAACAATCAACCTCTTGGAGGTAA
TAATAATTGAGTAAGAATGAAGCCAAAATTTGCTGTTCTTGGCTTGCTTA
TGATTTTTGCATGTTCATCAGTATGTTTATACTTGTTATCAAGCTTGCTG
CCAGCTAATAATGGGAGATACAAGCTTGGTTTCCCAAGCAATctggaaaa
tttgaagtcaCTTGTGGAGGTGATGAAAAGATATAAAGAAGATCATTTTT
ATTCAGTGATGATCGTCTTCTGTGCTGCTTACCTTTATAAACAAACCTTC
TCTATACCTGGCTCTGTATTTATGAATTTACTTGCTGGTGCGTTATTTGG
GATGCCGTTATCGTTCGTGTTGGCGTGCTTGTTGTCAGCTAGTGGTGCCA
CCTGTTGCTTTTTGTTGTCAATGGTCTTCGGTCGATCTATACTTATGCAT
TACTTCAAAGAGAAAGTTTTCCATCTTCAAACAAAGCTGGACGAAAATAG
TGATGGGCTGTTCTTTTATTTGTTATGTGTTCGACTTTTCCCGATGACGC
CGAATTGGTTATTGAACATGACTTTCCCGATCTTAGGTGTTCCTATGCAT
CTCTTCTTTCCTTCAGTTTTCATTGGATTGATGCCGTATAATTTCATTTG
CTGTCAAACTGGTTGTATTTTATCCGAAATCTCATCAGTCAATGACATCA
TGACAACAGGTACCATCTTGAAACTTACGCTTGTTGCTATGGTAGTTGCG
TTACCTGGTTACCTGATGCGTAGACtgaagaaagtgaagaaaaattgATG
TTGAAGAACATATTTTTCTGTGAAAATTAATTTGGTTTTAAAATGAGATG
CATTGgctaaaagatttgaaaacctTCTGGGAAATCGGCAGTTACCTCAA
ATCACTGTTCACCCTTTTTCTTCGAGTGATATAAGTGATTTTCATGAGAT
ATTTTTAGGAAGTATTTCATTTCTGTTCGAGAAATTTTattaatgaaaac
aaaatgtCTCTTCTTGAGATTTCTATGGGGTTTTTTGTGTGAAATGCTTC
TTTCAAAGGTTTAATAACGAGATTTTTTGTGATATACTCGCAGCAGAGCT
TGAATTTCAAGGGTATCGAACTCAAAGTTATCGATCTAGAACGCTAGAAT
TTATGATTTCATAAGATTTTAAacctaatttttaattttcaggacAAAAT
TATTACAtttgaattattatttttatagaTTATTTTATAGcagatatatt
tttcaattgaGTATGTTAAACTGAAATTGCTAAAGTTCCTGTTTTGTAGa
aagtttttattcaaaatattttaggaaaatatttt
Run BLAST on NCBI

protein sequence of TCONS_00059163-protein

>TCONS_00059163-protein ID=TCONS_00059163-protein|Name=TCONS_00059163-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
MKPKFAVLGLLMIFACSSVCLYLLSSLLPANNGRYKLGFPSNLENLKSLV
EVMKRYKEDHFYSVMIVFCAAYLYKQTFSIPGSVFMNLLAGALFGMPLSF
VLACLLSASGATCCFLLSMVFGRSILMHYFKEKVFHLQTKLDENSDGLFF
YLLCVRLFPMTPNWLLNMTFPILGVPMHLFFPSVFIGLMPYNFICCQTGC
ILSEISSVNDIMTTGTILKLTLVAMVVALPGYLMRRLKKVKKN
Run BLAST on NCBI

transcript from alignment at scaffold_319:65194..69320+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059163 ID=TCONS_00059163|Name=TCONS_00059163|organism=Clytia hemisphaerica|type=transcript|length=4127bp|location=Sequence derived from alignment at scaffold_319:65194..69320+ (Clytia hemisphaerica)
aagtcctgaatatgaaagattatttcaagagcatgaaattttggtttcta aacgttttttataagaaacaaacggctaattttaatagatcgtcactatt tgtgttctgaatgattgtttaatggtcatgatcacttagatatcaattat atatgtgttaaatgcataaccaggtaggtccataaaattatcacttgttt ttttttcatttacagCTTCGCATATAAAACAATCAACCTCTTGGAGGTAA TAATAATTGAGTAAGAATGAAGCCAAAATTTGCTGTTCTTGGCTTGCTTA TGATTTTTGCATGTTCATCAGTATGTTTATACTTGTTATCAAGCTTGCTG CCAGCTAATAATGGGAGGTAAATACTATTTCCTACGTTCAGTTTCAATCC ATTCTAGTTTGGTTTGTGATTCACCAGTTCCAGGGGTCGAATCAAATGTA ACTCTGGGTAATTATTAACAATGTTTAATTTACTTGGGCCCTAAACCact agtaagtaagtaagtctgtgacCGCAGTCGAAGACGACCTGAAAGCTCCT CTTTTGTTAGATcctttttcgatagctatctacacgaaggtaggggaggg cgccactctttctccctggattgctccacttagccttgatccttctctta attgctgagcatcaagcagaggggcaccaagtaccattttgggaatctgg gaatctttggtatgacgtgactaggggttgaacccacaaccttgtgcacc gtagccggatgctctaccactgcactacggtcacTATCCTAAACCATTAC CCTTCCAATCAGGACTCAAGCTCTTTACTAATTGGACATCATTCCATAAA TAATGTATATAGAACCTTGTTGTATTTGCCTTTCACTGATTCGACGTTTT ATCACGTGGACTGTTGaggaaaataatttataaaataatttcattttcat tcttaTCAAATCTTGGATTATAGATACAAGCTTGGTTTCCCAAGCAATct ggaaaatttgaagtcaCTTGTGGAGGTGATGAAAAGATATAAAGAAGATC ATTTTTATTCAGTGATGATCGTCTTCTGTGCTGCTTACCTTTATAAACAA ACCTTCTCTATACCTGGCTCTGTATTTATGGTgagtttctttttttgaaa tattcaaaccATAGAAGATTACCCTTTATCCCATGATCCTATAGGCACTC ATTTATGAGGCACTCTGTTTATGAGGCACTCCATTTATGAGGCACTCCAT TTATGAGGCAGTCAACCATAACAAAAGTGTTTATATTTTGACGTTATTGA GTTGGTTCTTTTAATGTGTAAAGGAATATATCAGGTAGTGTGAGATATTT GGCATGTAGTTATTATTTTATAGTAGTTCTGAACAAAATCTCCATACCTT TAATTgtcaaattattttccaaagtcaaGATATTCAGGTtatatgttttt gacttttagcaaGAAAACAATATAGTTTTAACGTAAGAACCgtcaaaaaa actaatttttaaagatttcaaatttaaaaatagttaaagacaaaaatatt tggagGTTTTATTCAGAGCTATTTGCAGGTTACTGTAGTTCAAATACCCC AAACCATCTGTTCACTAAGTTCTACTTATTGCTATGATTAGACTATAATT CACTAAACCTATGTTTACTTATGATTACAAGAGATTCCATAGAATTAATG CAAGTTTTCAGGACGTCACTAGCTTTCAATTTATTCATTTATCAACGATT AATCATGTCATGGTCAatcttttaacgtttttgagcactttcagaaagta aagtaacttttttaatcaattgagcataactttcgatctaatgaaccgaa ttcaataaatgacccatcagaatttaagtttatctttcttctttccaatg gaataggaatggttcctttgaaattttcattcgagaaaattagttttaaa gagaaacttttttgtggcgcacccggtaggcCAAAATATTTTCTACTTGT GAATTTAGCAACAAGCCTGCGAAAAACTCACGTGATAGATAGATTCTTAA AATTGCATAGCCATGATCTTTCTCAACCTCCCTGTTTCTGCTTTTAGAAT TTACTTGCTGGTGCGTTATTTGGGATGCCGTTATCGTTCGTGTTGGCGTG CTTGTTGTCAGCTAGTGGTGCCACCTGTTGCTTTTTGTTGTCAATGGTCT TCGGTCGATCTATACTTATGCATTACTTCAAAGAGAAAGTTTTCCATCTT CAAACAAAGGTTttagtcatttattttttttacttcaagtCTTAAATGGT AACGGTTTTTCGTTATTGAATTGATTATTGAACCTTAGAGAGTAAAACCC AACCCTTTGGTTTTCTTAGTGTTCttacctacccccttggaagaTGCTAT TTATTCCATTAAATGAATCATTTTAAAGAATCGGGACTGAATTTTTCATA GAGACAACCTTCTAAAGATCCGAATCCCTTAATTTTCCCTTTTAGAGATA CCAAATGTATTATTTTATACACCATTGattaaaattgttttgttttctta ttaATAGCTGGACGAAAATAGTGATGGGCTGTTCTTTTATTTGTTATGTG TTCGACTTTTCCCGATGACGCCGAATTGGTTATTGAACATGACTTTCCCG ATCTTAGGTGTTCCTATGCATCTCTTCTTTCCTTCAGTTTTCATTGGTAA gtatgttttctttgaataCAGTAAACTCCCGGTCGTTCGATCCTGCATTT ATTCGAATAATTCGGTTATTCGAAGTGAGATGCTTCCATTGGATCTGCTT ACCCAGCTCGGGCAAAAGCACTTTACGGTTATTCGAACTTCAGCTACTAA CAAATTTATCCCCTTTGAAGCAACGGAATCTACTGTATCTTCTTTTACTC AGTCTAAAAAAGCCTAAAGTACTAGCATATGTCCAGCGACAATTTTTAAA CTTCCATCTATGTCGCTTGTATACAAGGCTCGATCACCGATCTCTAACTA CTTGGCTGGACCGGACTAACAGATTACGGGAAGAGTGTTTTGAGCTGATT TGTCCGCCATTTTACTATTTGATCAGCTTGATGACCTACgagttcgaatg ttttgaaattggaacattcaaaaatcacatttccaCGGGAAATCTTTCCT GTAGTTAGCCTGTCTAATGTGTAAAGGATTATGATGTCTGTGGGCTCGAC GTTTTTTGCGTTGTGTGCTTTATGTATAAAGATTCTctctaaaatttcaa attctgaaTAATTCCAATAAAAGGTTTTCTGGTGACAAACTCTCAATGCC AACAATAATTAATGGAGCCTTAGATGTGAATCATCTAAATGAAAACAAGA GCTGTgttcttttttgataaaactGTAAATAGCCAGGAATCTATCTTGAG TACCTATCTCATCTTAGGATTGATGCCGTATAATTTCATTTGCTGTCAAA CTGGTTGTATTTTATCCGAAATCTCATCAGTCAATGACATCATGACAACA GGTACCATCTTGAAACTTACGCTTGTTGCTATGGTAGTTGCGTTACCTGG TTACCTGATGCGTAGACtgaagaaagtgaagaaaaattgATGTTGAAGAA CATATTTTTCTGTGAAAATTAATTTGGTTTTAAAATGAGATGCATTGgct aaaagatttgaaaacctTCTGGGAAATCGGCAGTTACCTCAAATCACTGT TCACCCTTTTTCTTCGAGTGATATAAGTGATTTTCATGAGATATTTTTAG GAAGTATTTCATTTCTGTTCGAGAAATTTTattaatgaaaacaaaatgtC TCTTCTTGAGATTTCTATGGGGTTTTTTGTGTGAAATGCTTCTTTCAAAG GTTTAATAACGAGATTTTTTGTGATATACTCGCAGCAGAGCTTGAATTTC AAGGGTATCGAACTCAAAGTTATCGATCTAGAACGCTAGAATTTATGATT TCATAAGATTTTAAacctaatttttaattttcaggacAAAATTATTACAt ttgaattattatttttatagaTTATTTTATAGcagatatatttttcaatt gaGTATGTTAAACTGAAATTGCTAAAGTTCCTGTTTTGTAGaaagttttt attcaaaatattttaggaaaatatttt

Coding sequence (CDS) from alignment at scaffold_319:65194..69320+

>TCONS_00059163 ID=TCONS_00059163|Name=TCONS_00059163|organism=Clytia hemisphaerica|type=CDS|length=3660bp|location=Sequence derived from alignment at scaffold_319:65194..69320+ (Clytia hemisphaerica)
ATGAAGCCAAAATTTGCTGTTCTTGGCTTGCTTATGATTTTTGCATGTTC
ATCAGTATGTTTATACTTGTTATCAAGCTTGCTGCCAGCTAATAATGGGA
GATACAAGCTTGGTTTCCCAAGCAATctggaaaatttgaagtcaCTTGTG
GAGGTGATGAAAAGATATAAAGAAGATCATTTTTATTCAGTGATGATCGT
CTTCTGTGCTGCTTACCTTTATAAACAAACCTTCTCTATACCTGGCTCTG
TATTTATGAATTTACTTGCTGGTGCGTTATTTGGGATGCCGTTATCGTTC
GTGTTGGCGTGCTTGTTGTCAGCTAGTGGTGCCACCTGTTGCTTTTTGTT
GTCAATGGTCTTCGGTCGATCTATACTTATGCATTACTTCAAAGAGAAAG
TTTTCCATCTTCAAACAAAGCTGGACGAAAATAGTGATGGGCTGTTCTTT
TATTTGTTATGTGTTCGACTTTTCCCGATGACGCCGAATTGGTTATTGAA
CATGACTTTCCCGATCTTAGGTGTTCCTATGCATCTCTTCTTTCCTTCAG
TTTTCATTGGATTGATGCCGTATAATTTCATTTGCTGTCAAACTGGTTGT
ATTTTATCCGAAATCTCATCAGTCAATGACATCATGACAACAGGTACCAT
CTTGAAACTTACGCTTGTTGCTATGGTAGTTGCGTTACCTGGTTACCTGA
TGCGTAGACtgaagaaagtgaagaaaaattgAATGAAGCCAAAATTTGCT
GTTCTTGGCTTGCTTATGATTTTTGCATGTTCATCAGTATGTTTATACTT
GTTATCAAGCTTGCTGCCAGCTAATAATGGGAGATACAAGCTTGGTTTCC
CAAGCAATctggaaaatttgaagtcaCTTGTGGAGGTGATGAAAAGATAT
AAAGAAGATCATTTTTATTCAGTGATGATCGTCTTCTGTGCTGCTTACCT
TTATAAACAAACCTTCTCTATACCTGGCTCTGTATTTATGAATTTACTTG
CTGGTGCGTTATTTGGGATGCCGTTATCGTTCGTGTTGGCGTGCTTGTTG
TCAGCTAGTGGTGCCACCTGTTGCTTTTTGTTGTCAATGGTCTTCGGTCG
ATCTATACTTATGCATTACTTCAAAGAGAAAGTTTTCCATCTTCAAACAA
AGCTGGACGAAAATAGTGATGGGCTGTTCTTTTATTTGTTATGTGTTCGA
CTTTTCCCGATGACGCCGAATTGGTTATTGAACATGACTTTCCCGATCTT
AGGTGTTCCTATGCATCTCTTCTTTCCTTCAGTTTTCATTGGATTGATGC
CGTATAATTTCATTTGCTGTCAAACTGGTTGTATTTTATCCGAAATCTCA
TCAGTCAATGACATCATGACAACAGGTACCATCTTGAAACTTACGCTTGT
TGCTATGGTAGTTGCGTTACCTGGTTACCTGATGCGTAGACtgaagaaag
tgaagaaaaattgAATGAAGCCAAAATTTGCTGTTCTTGGCTTGCTTATG
ATTTTTGCATGTTCATCAGTATGTTTATACTTGTTATCAAGCTTGCTGCC
AGCTAATAATGGGAGATACAAGCTTGGTTTCCCAAGCAATctggaaaatt
tgaagtcaCTTGTGGAGGTGATGAAAAGATATAAAGAAGATCATTTTTAT
TCAGTGATGATCGTCTTCTGTGCTGCTTACCTTTATAAACAAACCTTCTC
TATACCTGGCTCTGTATTTATGAATTTACTTGCTGGTGCGTTATTTGGGA
TGCCGTTATCGTTCGTGTTGGCGTGCTTGTTGTCAGCTAGTGGTGCCACC
TGTTGCTTTTTGTTGTCAATGGTCTTCGGTCGATCTATACTTATGCATTA
CTTCAAAGAGAAAGTTTTCCATCTTCAAACAAAGCTGGACGAAAATAGTG
ATGGGCTGTTCTTTTATTTGTTATGTGTTCGACTTTTCCCGATGACGCCG
AATTGGTTATTGAACATGACTTTCCCGATCTTAGGTGTTCCTATGCATCT
CTTCTTTCCTTCAGTTTTCATTGGATTGATGCCGTATAATTTCATTTGCT
GTCAAACTGGTTGTATTTTATCCGAAATCTCATCAGTCAATGACATCATG
ACAACAGGTACCATCTTGAAACTTACGCTTGTTGCTATGGTAGTTGCGTT
ACCTGGTTACCTGATGCGTAGACtgaagaaagtgaagaaaaattgAATGA
AGCCAAAATTTGCTGTTCTTGGCTTGCTTATGATTTTTGCATGTTCATCA
GTATGTTTATACTTGTTATCAAGCTTGCTGCCAGCTAATAATGGGAGATA
CAAGCTTGGTTTCCCAAGCAATctggaaaatttgaagtcaCTTGTGGAGG
TGATGAAAAGATATAAAGAAGATCATTTTTATTCAGTGATGATCGTCTTC
TGTGCTGCTTACCTTTATAAACAAACCTTCTCTATACCTGGCTCTGTATT
TATGAATTTACTTGCTGGTGCGTTATTTGGGATGCCGTTATCGTTCGTGT
TGGCGTGCTTGTTGTCAGCTAGTGGTGCCACCTGTTGCTTTTTGTTGTCA
ATGGTCTTCGGTCGATCTATACTTATGCATTACTTCAAAGAGAAAGTTTT
CCATCTTCAAACAAAGCTGGACGAAAATAGTGATGGGCTGTTCTTTTATT
TGTTATGTGTTCGACTTTTCCCGATGACGCCGAATTGGTTATTGAACATG
ACTTTCCCGATCTTAGGTGTTCCTATGCATCTCTTCTTTCCTTCAGTTTT
CATTGGATTGATGCCGTATAATTTCATTTGCTGTCAAACTGGTTGTATTT
TATCCGAAATCTCATCAGTCAATGACATCATGACAACAGGTACCATCTTG
AAACTTACGCTTGTTGCTATGGTAGTTGCGTTACCTGGTTACCTGATGCG
TAGACtgaagaaagtgaagaaaaattgAATGAAGCCAAAATTTGCTGTTC
TTGGCTTGCTTATGATTTTTGCATGTTCATCAGTATGTTTATACTTGTTA
TCAAGCTTGCTGCCAGCTAATAATGGGAGATACAAGCTTGGTTTCCCAAG
CAATctggaaaatttgaagtcaCTTGTGGAGGTGATGAAAAGATATAAAG
AAGATCATTTTTATTCAGTGATGATCGTCTTCTGTGCTGCTTACCTTTAT
AAACAAACCTTCTCTATACCTGGCTCTGTATTTATGAATTTACTTGCTGG
TGCGTTATTTGGGATGCCGTTATCGTTCGTGTTGGCGTGCTTGTTGTCAG
CTAGTGGTGCCACCTGTTGCTTTTTGTTGTCAATGGTCTTCGGTCGATCT
ATACTTATGCATTACTTCAAAGAGAAAGTTTTCCATCTTCAAACAAAGCT
GGACGAAAATAGTGATGGGCTGTTCTTTTATTTGTTATGTGTTCGACTTT
TCCCGATGACGCCGAATTGGTTATTGAACATGACTTTCCCGATCTTAGGT
GTTCCTATGCATCTCTTCTTTCCTTCAGTTTTCATTGGATTGATGCCGTA
TAATTTCATTTGCTGTCAAACTGGTTGTATTTTATCCGAAATCTCATCAG
TCAATGACATCATGACAACAGGTACCATCTTGAAACTTACGCTTGTTGCT
ATGGTAGTTGCGTTACCTGGTTACCTGATGCGTAGACtgaagaaagtgaa
gaaaaattgA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037260XLOC_037260Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059163-exon-scaffold_319-1491911889:65194..65560TCONS_00059163-exon-scaffold_319-1491911889:65194..65560Clytia hemisphaericaexon
TCONS_00059163-exon-scaffold_319-1510915933:65194..65560TCONS_00059163-exon-scaffold_319-1510915933:65194..65560Clytia hemisphaericaexon
TCONS_00059163-exon-scaffold_319-1575043694:65194..65560TCONS_00059163-exon-scaffold_319-1575043694:65194..65560Clytia hemisphaericaexon
TCONS_00059163-exon-scaffold_319-1491911889:66167..66323TCONS_00059163-exon-scaffold_319-1491911889:66167..66323Clytia hemisphaericaexon
TCONS_00059163-exon-scaffold_319-1510915933:66167..66323TCONS_00059163-exon-scaffold_319-1510915933:66167..66323Clytia hemisphaericaexon
TCONS_00059163-exon-scaffold_319-1575043694:66167..66323TCONS_00059163-exon-scaffold_319-1575043694:66167..66323Clytia hemisphaericaexon
TCONS_00059163-exon-scaffold_319-1491911889:67291..67452TCONS_00059163-exon-scaffold_319-1491911889:67291..67452Clytia hemisphaericaexon
TCONS_00059163-exon-scaffold_319-1510915933:67291..67452TCONS_00059163-exon-scaffold_319-1510915933:67291..67452Clytia hemisphaericaexon
TCONS_00059163-exon-scaffold_319-1575043694:67291..67452TCONS_00059163-exon-scaffold_319-1575043694:67291..67452Clytia hemisphaericaexon
TCONS_00059163-exon-scaffold_319-1491911889:67751..67889TCONS_00059163-exon-scaffold_319-1491911889:67751..67889Clytia hemisphaericaexon
TCONS_00059163-exon-scaffold_319-1510915933:67751..67889TCONS_00059163-exon-scaffold_319-1510915933:67751..67889Clytia hemisphaericaexon
TCONS_00059163-exon-scaffold_319-1575043694:67751..67889TCONS_00059163-exon-scaffold_319-1575043694:67751..67889Clytia hemisphaericaexon
TCONS_00059163-exon-scaffold_319-1491911889:68611..69320TCONS_00059163-exon-scaffold_319-1491911889:68611..69320Clytia hemisphaericaexon
TCONS_00059163-exon-scaffold_319-1510915933:68611..69320TCONS_00059163-exon-scaffold_319-1510915933:68611..69320Clytia hemisphaericaexon
TCONS_00059163-exon-scaffold_319-1575043694:68611..69320TCONS_00059163-exon-scaffold_319-1575043694:68611..69320Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059163-proteinTCONS_00059163-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_319supercontigscaffold_319:65194..69320 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.4243 12.8674 3.58825 1.96556 5.82473 3.77813 4.88856 4.88697 5.14175 7.30939 8.08729 4.33396 8.22737 5.85797 6.29174 10.5705 4.99953 6.37981 3.85898 4.00123 5.678 5.39345 28.1475 24.4045 4.57575 8.54726 7.80701 7.40463 18.0445 17.9535
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032816SNARE_assoc
Blast
BLAST of TCONS_00059163 vs. Swiss-Prot (Human)
Match: TM41A (Transmembrane protein 41A OS=Homo sapiens GN=TMEM41A PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 4.190e-64
Identity = 122/247 (49.39%), Postives = 174/247 (70.45%), Query Frame = 3
Query:  267 MKPKFAVLGLLMIFAXXXXXXXXXXXXXPANN--------GRYKLGFPSNLENLKSLVEVMKRYKEDHFYSVMIVFCAAYLYKQTFSIPGSVFMNLLAGALFGMPLSFVLACLLSASGATCCFLLSMVFGRSILMHYFKEKVFHLQTKLDENSDGLFFYLLCVRLFPMTPNWLLNMTFPILGVPMHLFFPSVFIGLMPYNFICCQTGCILSEISSVNDIMTTGTILKLTLVAMVVALPGYLMRRLKK 983
            M+P   +LGLL++FA  +  LYLLS+ LP           G   L FPS+L  L+ L EV++ Y+++H   V ++FC AYLYKQ F+IPGS F+N+LAGALFG  L  +L C+L++ GATCC+LLS +FG+ +++ YF +KV  LQ K++EN + LFF+LL +RLFPMTPNW LN++ PIL +P+  FF SV IGL+PYNFIC QTG ILS ++S++ + +  T+ KL  +AMV  +PG L+++  +
Sbjct:    1 MRP---LLGLLLVFAGCTFALYLLSTRLPRGRRLGSTEEAGGRSLWFPSDLAELRELSEVLREYRKEHQAYVFLLFCGAYLYKQGFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATCCYLLSSIFGKQLVVSYFPDKVALLQRKVEENRNSLFFFLLFLRLFPMTPNWFLNLSAPILNIPIVQFFFSVLIGLIPYNFICVQTGSILSTLTSLDALFSWDTVFKLLAIAMVALIPGTLIKKFSQ 244          
The following BLAST results are available for this feature:
BLAST of TCONS_00059163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM41A4.190e-6449.39Transmembrane protein 41A OS=Homo sapiens GN=TMEM4... [more]
back to top