TCONS_00059162 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059162
Unique NameTCONS_00059162
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2833

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059162 ID=TCONS_00059162|Name=TCONS_00059162|organism=Clytia hemisphaerica|type=transcript|length=2833bp
tttttatttgaacccttggaaattccacataatttgtcaaaattttgaaa
aagtatcggaaattccagatttttccaccaaaaaattgattttgtattag
aaatccaggaatttcaaaaaaacattttgcctcAGAATTCTGCCGTCGTC
CACCCACTGTAACAGACTTTAACTGGAAGAGCCATATAAagtgccatata
aacaaaactcaacatccttacaaaagttatctttttgatttcccaaacat
ttgtcTTTTTAAGACAATTTCACTAGGTAAGTTGAAGCACTTCAAAATAG
TCagaaaataaggtaaaaaagtTGTCACCAGGGGATCAGAAAAAAGTCTC
AGAAACAATATGCAAAAATGAAAAGTCAAGTTGAAATGGGTAAAGACAAT
AGGTCTTTTCCTTATTTTGTGGATGAAATTTATATGTTAGTTCTGGTTAG
TTTGGTAACAGGCAGCTTGCTTAAGATTTAGTTGAAATCCAACTGGATTT
TACCACATCTGCTGAAaccaatttttctgatttttattaTGGCTATGGCC
TCAGCAACAAATTTGAAAGACCTAGCCAGATACCTACCAAAGTTTTCTGT
GTTTGTATTATCATTGGCTAAGAAAACTCAAATTTATTCAGCCATTCTAA
TCTTTCCTGATGCAACTAAATCTGAACTGAAAATATGGGTTGGACATAAT
GTCCAATCAGAATCTATTTTGGTCGGACATTTCATTGTCCTATGTCTGAC
CATTATTTCAGGCCCTGGAATCTTGCAGGAAAACAATTTTCAGTTATTTG
AACTCCCGGTTATTtgaagtaaattcttatccccCTTGGATCTTTGAATA
ACGGTCTACTGTAGCAGCAGAAAAGAGTCAGAGTCTGCTATACCAAGACC
AGGTTTGTTAATCAATTGACATTGGTTTGACATTATTTGGATCTTTTAAA
CATTTCATGGGTAAGGGCTTGTCATTCAGTGACAAGACCAATGCTCTTAA
AATACTTATACCACTTTAGGATGGAAAATATATTAGCACTTTATAAAGAT
TTTGGTGACCAGGAGTACTTTGGAGAATGTGTTTCTAAGACAACTCACAT
GATTCAAGCTGCAACAGCTGCCCAACAAAACAATGAACCAGACTATGTGG
TCCTGGCATGTTTGCTTCATGATATAGgacattttcttgacaaagatAAT
ATGAATGGGCTAGGCGTCATTGAACATGGAGCAGTAGGTGCTAGATTTTT
AAGAAAGCTAGGTATGGAAGAGAAAGTCTGCTGCCTGGTTGAGAACCATG
TCTTGGCAAAGAAGTATTTAGTATCCAAATATGACGAATACTATGACAAG
TTATCTGATGCTTCCAAAAAGACGCTTGAATTTCAAGGAGGGCGTATGTC
AATGGAACAAATGGTCCACTTTGAAAAGGACCCTTATTTCAAGGAAAGCA
TTAAAGTGAGAACATATGATGATATTGGAAAACAAGTGGGTATGAATATA
CCTAAACTTGTTGAGTTTCATGATTTGATCAATAAATACCTCAATCAAGA
ACAAGAACACTGAACGTTAAACCTTAAATTTGATTTCTTCCTGTTTggta
ttttaataatttttgttattactctcaggtgcctaataaacgtgcCCCat
cgcttattaatttttcgaaaattttccaacctacacggaccttattagga
ccccggACCANcacgcttattaatttttcaacATTCCGACCTCcacggac
cttattaggacccccagtttattaaaattcagaaatttcttATCAAGTAT
TTTTTAGATAGACTGCTAGATTCATGTAATACAGTACTGTACTTATTTTA
CGAGAGCTTGTTACAGTaacttttgttcttttcttgtTACATTTTCATCT
TTTACTTGTATTAAAACATTTAGTCTTATTGTTGTGTTACACTCAAAATA
TGTGTATCTTCTTGCTTCCAATAATTAGgggtattttcgaaaaattattc
attattcattcaAATTATTAATTTCCAACCCCCACGCTTAAGACCCATTt
attaaaattctgaaaaaatttatttttttataacgtTTATTTGTACCCcc
acgtttattaggcaccttgatggatgaaaaaaactaaacaatAGGTAGCA
AAGGAGTTCTTTTGATACTTTGAACTTGGGCAAtcataaatctttcattt
ttaacctttagatttaaaaataaaacttgatgTGGCCAATAATTTTGGCT
GGAGCAAGGACATACGCTCCTTACCTTGTCTTTCCTGTAGCTCTTTGTGT
TGGTACTGTTGGTTATATGCTTGAAGGTCAATTCAGTGATCGAAAACGTG
GACGCATTCAAGACCCAAGTGCATTGGAACTACGTACCGCAAGAAAACTG
GCTGAAAGTGAAGCTAATAATGATTTGGAAAGTTTTAAAGCAACATTACC
AAAATCTATTTTAGACAGAAATTTGTCGAACCCAGAAGCTTACAAATGAT
GTTTCATGTGAATGATTTTGGTTGTATAGACTGATATTAAATCAATGGTA
GAAGTTTATCAATAGCATGGTGTCATGAGGGATGTTTCATAGGTTGAAAG
TCGAGATTCTCTCTGGGCTTCCATGCTTTCATGGATATATATGAACTTCA
TTAGCTTTTGTATTATGTAAAGCAATGCTTTTTGTTTGATTAATAATCTA
TATTTAAATAATATACAGCAATATAATGGAATTTTAGTGCAATATTTTTC
TCGTCAATTCATCACCATTTAAAACACAGAACTACTccttatttcaattt
taaactgttttaaattgagttttctcagggggg
Run BLAST on NCBI

protein sequence of TCONS_00059162-protein

>TCONS_00059162-protein ID=TCONS_00059162-protein|Name=TCONS_00059162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MLLKYLYHFRMENILALYKDFGDQEYFGECVSKTTHMIQAATAAQQNNEP
DYVVLACLLHDIGHFLDKDNMNGLGVIEHGAVGARFLRKLGMEEKVCCLV
ENHVLAKKYLVSKYDEYYDKLSDASKKTLEFQGGRMSMEQMVHFEKDPYF
KESIKVRTYDDIGKQVGMNIPKLVEFHDLINKYLNQEQEH
Run BLAST on NCBI

transcript from alignment at scaffold_319:60605..63495+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059162 ID=TCONS_00059162|Name=TCONS_00059162|organism=Clytia hemisphaerica|type=transcript|length=2891bp|location=Sequence derived from alignment at scaffold_319:60605..63495+ (Clytia hemisphaerica)
tttttatttgaacccttggaaattccacataatttgtcaaaattttgaaa
aagtatcggaaattccagatttttccaccaaaaaattgattttgtattag
aaatccaggaatttcaaaaaaacattttgcctcAGAATTCTGCCGTCGTC
CACCCACTGTAACAGACTTTAACTGGAAGAGCCATATAAagtgccatata
aacaaaactcaacatccttacaaaagttatctttttgatttcccaaacat
ttgtcTTTTTAAGACAATTTCACTAGGTAAGTTGAAGCACTTCAAAATAG
TCagaaaataaggtaaaaaagtTGTCACCAGGGGATCAGAAAAAAGTCTC
AGAAACAATATGCAAAAATGAAAAGTCAAGTTGAAATGGGTAAAGACAAT
AGGTCTTTTCCTTATTTTGTGGATGAAATTTATATGTTAGTTCTGGTTAG
TTTGGTAACAGGCAGCTTGCTTAAGATTTAGTTGAAATCCAACTGGATTT
TACCACATCTGCTGAAaccaatttttctgatttttattaTGGCTATGGCC
TCAGCAACAAATTTGAAAGACCTAGCCAGATACCTACCAAAGTTTTCTGT
GTTTGTATTATCATTGGCTAAGAAAACTCAAATTTATTCAGCCATTCTAA
TCTTTCCTGATGCAACTAAATCTGAACTGAAAATATGGGTTGGACATAAT
GTCCAATCAGAATCTATTTTGGTCGGACATTTCATTGGGTGGGTCCGACA
ATGTCCTATGTTTGACCATTATTTCAGGCNTCGGACATTTCATTGTCCTA
TGTCTGACCATTATTTCAGGCCCTGGAATCTTGCAGGAAAACAATTTTCA
GTTATTTGAACTCCCGGTTATTtgaagtaaattcttatccccCTTGGATC
TTTGAATAACGGTCTACTGTAGCAGCAGAAAAGAGTCAGAGTCTGCTATA
CCAAGACCAGGTTTGTTAATCAATTGACATTGGTTTGACATTATTTGGAT
CTTTTAAACATTTCATGGGTAAGGGCTTGTCATTCAGTGACAAGACCAAT
GCTCTTAAAATACTTATACCACTTTAGGATGGAAAATATATTAGCACTTT
ATAAAGATTTTGGTGACCAGGAGTACTTTGGAGAATGTGTTTCTAAGACA
ACTCACATGATTCAAGCTGCAACAGCTGCCCAACAAAACAATGAACCAGA
CTATGTGGTCCTGGCATGTTTGCTTCATGATATAGgacattttcttgaca
aagatAATATGAATGGGCTAGGCGTCATTGAACATGGAGCAGTAGGTGCT
AGATTTTTAAGAAAGCTAGGTATGGAAGAGAAAGTCTGCTGCCTGGTTGA
GAACCATGTCTTGGCAAAGAAGTATTTAGTATCCAAATATGACGAATACT
ATGACAAGTTATCTGATGCTTCCAAAAAGACGCTTGAATTTCAAGGAGGG
CGTATGTCAATGGAACAAATGGTCCACTTTGAAAAGGACCCTTATTTCAA
GGAAAGCATTAAAGTGAGAACATATGATGATATTGGAAAACAAGTGGGTA
TGAATATACCTAAACTTGTTGAGTTTCATGATTTGATCAATAAATACCTC
AATCAAGAACAAGAACACTGAACGTTAAACCTTAAATTTGATTTCTTCCT
GTTTggtattttaataatttttgttattactctcaggtgcctaataaacg
tgcCCCatcgcttattaatttttcgaaaattttccaacctacacggacct
tattaggaccccggACCANcacgcttattaatttttcaacATTCCGACCT
CcacggaccttattaggacccccagtttattaaaattcagaaatttcttA
TCAAGTATTTTTTAGATAGACTGCTAGATTCATGTAATACAGTACTGTAC
TTATTTTACGAGAGCTTGTTACAGTaacttttgttcttttcttgtTACAT
TTTCATCTTTTACTTGTATTAAAACATTTAGTCTTATTGTTGTGTTACAC
TCAAAATATGTGTATCTTCTTGCTTCCAATAATTAGgggtattttcgaaa
aattattcattattcattcaAATTATTAATTTCCAACCCCCACGCTTAAG
ACCCATTtattaaaattctgaaaaaatttatttttttataacgtTTATTT
GTACCCccacgtttattaggcaccttgatggatgaaaaaaactaaacaat
AGGTAGCAAAGGAGTTCTTTTGATACTTTGAACTTGGGCAAtcataaatc
tttcatttttaacctttagatttaaaaataaaacttgatgTGGCCAATAA
TTTTGGCTGGAGCAAGGACATACGCTCCTTACCTTGTCTTTCCTGTAGCT
CTTTGTGTTGGTACTGTTGGTTATATGCTTGAAGGTCAATTCAGTGATCG
AAAACGTGGACGCATTCAAGACCCAAGTGCATTGGAACTACGTACCGCAA
GAAAACTGGCTGAAAGTGAAGCTAATAATGATTTGGAAAGTTTTAAAGCA
ACATTACCAAAATCTATTTTAGACAGAAATTTGTCGAACCCAGAAGCTTA
CAAATGATGTTTCATGTGAATGATTTTGGTTGTATAGACTGATATTAAAT
CAATGGTAGAAGTTTATCAATAGCATGGTGTCATGAGGGATGTTTCATAG
GTTGAAAGTCGAGATTCTCTCTGGGCTTCCATGCTTTCATGGATATATAT
GAACTTCATTAGCTTTTGTATTATGTAAAGCAATGCTTTTTGTTTGATTA
ATAATCTATATTTAAATAATATACAGCAATATAATGGAATTTTAGTGCAA
TATTTTTCTCGTCAATTCATCACCATTTAAAACACAGAACTACTccttat
ttcaattttaaactgttttaaattgagttttctcagggggg

Coding sequence (CDS) from alignment at scaffold_319:60605..63495+

>TCONS_00059162 ID=TCONS_00059162|Name=TCONS_00059162|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at scaffold_319:60605..63495+ (Clytia hemisphaerica)
ATGCTCTTAAAATACTTATACCACTTTAGGATGGAAAATATATTAGCACT
TTATAAAGATTTTGGTGACCAGGAGTACTTTGGAGAATGTGTTTCTAAGA
CAACTCACATGATTCAAGCTGCAACAGCTGCCCAACAAAACAATGAACCA
GACTATGTGGTCCTGGCATGTTTGCTTCATGATATAGgacattttcttga
caaagatAATATGAATGGGCTAGGCGTCATTGAACATGGAGCAGTAGGTG
CTAGATTTTTAAGAAAGCTAGGTATGGAAGAGAAAGTCTGCTGCCTGGTT
GAGAACCATGTCTTGGCAAAGAAGTATTTAGTATCCAAATATGACGAATA
CTATGACAAGTTATCTGATGCTTCCAAAAAGACGCTTGAATTTCAAGGAG
GGCGTATGTCAATGGAACAAATGGTCCACTTTGAAAAGGACCCTTATTTC
AAGGAAAGCATTAAAGTGAGAACATATGATGATATTGGAAAACAAGTGGG
TATGAATATACCTAAACTTGTTGAGTTTCATGATTTGATCAATAAATACC
TCAATCAAGAACAAGAACACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037259XLOC_037259Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059162-proteinTCONS_00059162-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059162-exon-scaffold_319-1491911889:60605..61332TCONS_00059162-exon-scaffold_319-1491911889:60605..61332Clytia hemisphaericaexon
TCONS_00059162-exon-scaffold_319-1510915933:60605..61332TCONS_00059162-exon-scaffold_319-1510915933:60605..61332Clytia hemisphaericaexon
TCONS_00059162-exon-scaffold_319-1575043694:60605..61332TCONS_00059162-exon-scaffold_319-1575043694:60605..61332Clytia hemisphaericaexon
TCONS_00059162-exon-scaffold_319-1491911889:61391..63495TCONS_00059162-exon-scaffold_319-1491911889:61391..63495Clytia hemisphaericaexon
TCONS_00059162-exon-scaffold_319-1510915933:61391..63495TCONS_00059162-exon-scaffold_319-1510915933:61391..63495Clytia hemisphaericaexon
TCONS_00059162-exon-scaffold_319-1575043694:61391..63495TCONS_00059162-exon-scaffold_319-1575043694:61391..63495Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_319supercontigscaffold_319:60605..63495 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.6932	17.7718	14.947	12.2404	1.1176	6.80029	2.29588	6.85129	8.86085	8.5439	13.6603	7.78741	6.7214	5.71588	6.78531	4.97654	10.2303	9.49694	7.26843	0.00410489	15.5335	7.63147	25.4472	19.9151	6.6772	9.50924	13.3056	10.3575	13.6366	12.0497
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006675HDIG_dom
IPR006674HD_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059162 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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