|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059160 ID=TCONS_00059160|Name=TCONS_00059160|organism=Clytia hemisphaerica|type=transcript|length=2989bpRun BLAST on NCBI protein sequence of TCONS_00059160-protein >TCONS_00059160-protein ID=TCONS_00059160-protein|Name=TCONS_00059160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp MTEIQCIVVQKHHRNLLGNKGKYVQDISAKFSVQIKFPDRRKAEDPPLDERun BLAST on NCBI transcript from alignment at scaffold_319:35527..41301+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059160 ID=TCONS_00059160|Name=TCONS_00059160|organism=Clytia hemisphaerica|type=transcript|length=5775bp|location=Sequence derived from alignment at scaffold_319:35527..41301+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_319:35527..41301+ >TCONS_00059160 ID=TCONS_00059160|Name=TCONS_00059160|organism=Clytia hemisphaerica|type=CDS|length=6075bp|location=Sequence derived from alignment at scaffold_319:35527..41301+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059160 vs. Swiss-Prot (Human)
Match: VIGLN (Vigilin OS=Homo sapiens GN=HDLBP PE=1 SV=2) HSP 1 Score: 444.121 bits (1141), Expect = 5.747e-136 Identity = 251/579 (43.35%), Postives = 355/579 (61.31%), Query Frame = 2
Query: 329 KVQLKKLAEERLENSFTEEITAKPEHHRFLIGRNGANIQKLRESTGARIVFPTRQDDNKEIITIIGKKESVQQAKKELEAKIEALSNVVESEILIDPKYHKHLAARRAQILNDLSEEFGGVTISLPKDQATS-KVAVKGAKECVEGAKNRLKEIVDDLEQMTEIQCIVVQKHHRNLLGNKGKYVQDISAKFSVQIKFPDRRKXXXXXXXXXXXXX----------------XVNKNDIIIILGRKDNAENAKAALMELIPVSKEVMIPFDNHRFIIGQKGAGIRKLMDDHDVNINVPPPERKEEIIIVTGPIANVEKAIIALNVRNDEIESGNEDRRLRQFELILDVPHRHHPKLIGRKGAVIQKLRDDFGVMINVPSPKTPTEDDKADQIKLIGYEDRCVKAKAAIDEMIRELEEQMVMEIEIDSRIHNRIIGPRGKSVRKLMDQFKVDIRFPK-GEKD-KCV-VTGLEENCEACKXXXXXXXXXXXXXXXXRAQERDMMDAYMAPXXXXXXXXXXXXDLFGYVVKDAPWNGSAQNGKSAPAPENPKSVSVPDAGNESEFPDLGLKAASNGQGKAWGP 2005
K QL LAEE+ SFT +I AKPE+H+FLIG+ G I+K+R+STGAR++FP +D ++++ITIIGK+++V++A+KELEA I+ L NVVE +L+DPK+H+H RR Q+L +++EE+GGV +S P+ S KV +KGAK+CVE AK R++EI++DLE ++C + QK HR+++G KG +Q I+ FSVQIKFPDR + + E + DIIII GRK+ E AK AL L+PV+ EV +PFD HR++IGQKG+GIRK+MD+ +VNI+VP PE + +II +TG AN+++A L R E+++ EDR LR F+L + V ++HPK+IGRKGAVI ++R + V N+ P + DQI + GYE A+ AI ++ ELE+ + ++ +D R+H RIIG RGK++RK+MD+FKVDIRFP+ G D CV VTGL EN E EE + + + YM P A G+VV+DAPW S+ S PD + EFP G + A + WGP
Sbjct: 713 KKQLLHLAEEKQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARVIFPAAEDKDQDLITIIGKEDAVREAQKELEALIQNLDNVVEDSMLVDPKHHRHFVIRRGQVLREIAEEYGGVMVSFPRSGTQSDKVTLKGAKDCVEAAKKRIQEIIEDLEAQVTLECAIPQKFHRSVMGPKGSRIQQITRDFSVQIKFPDREENAVHSTEPVVQENGDEAGEGREAKDCDPGSPRRCDIIIISGRKEKCEAAKEALEALVPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERVKELQAEQEDRALRSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDV--NIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEA----IDHILNLEEEYLADVVDSEALQVYMKPPAHEEAKAPSR----GFVVRDAPWTASS-------------SEKAPDMSSSEEFPSFGAQVAP--KTLPWGP 1266 HSP 2 Score: 139.428 bits (350), Expect = 2.562e-33 Identity = 118/454 (25.99%), Postives = 220/454 (48.46%), Query Frame = 2
Query: 329 KVQLKKLAEERLENSFTEEITAKPEHHRFLIGRNGANIQKLRESTGARIV-FPTRQDDNKEIITIIGKKESVQQAKKELEAKIEAL-SNVVESEILIDPKYHKHLAARRAQILNDLSEEFGGVTISLPKDQATSK-VAVKGAKECVEGAKNRLKEIVDDLEQMTEIQCIVVQKHHRNLLGNKGKYVQDISAKFS-VQIKFPDRRKXXXXXXXXXXXXXXVNKNDIIIILGRKDNAENAKAALMELIPVSKEVMIPFD------NHRFIIGQKGAGIRKLMDDHDVNINVPPPERKEE-IIIVTGPIANVEKAIIALNVRNDEIESGNEDRRLRQFELILDVPHRHHPKLIGRKGAVIQKLRDDFG-VMINVPSPKTPTEDDKADQIKLIGYEDRCVKAKAAIDEMIRELEEQMVMEIEIDSRIHNRIIGPRGKSVRKLMDQFKVDIRFPKGEKD 1654
K +L +LA R+EN T+++ + HR +IG+ G I+++R+ I+ FP + +I+ + G K V++ K ++ + L N + I ++HK++ + + + EE I LP + + S+ + + G + E A++R+ I DL + E++ + K H +L+G KG+ ++ I + V I FP E + +D ++I G + E AK L+ L + D H+F+IG+ G IRK+ D + P E K++ +I + G V +A L +++ ED L V +HH + R+G V++++ +++G VM++ P T ++D++ L G +D AK I E+I +LE Q+ +E I + H ++GP+G ++++ F V I+FP E++
Sbjct: 494 KRELLELAS-RMENERTKDLIIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKS-DIVQLRGPKNEVEKCTKYMQKMVADLVENSYSISVPIFKQFHKNIIGKGGANIKKIREE-SNTKIDLPAENSNSETIIITGKRANCEAARSRILSIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFP----------------VEGSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARVIFPAAEDKDQDLITIIGKEDAVREAQKELEALIQNLDNVVEDSML--------VDPKHHRHFVIRRGQVLREIAEEYGGVMVSFPRSGT-----QSDKVTLKGAKDCVEAAKKRIQEIIEDLEAQVTLECAIPQKFHRSVMGPKGSRIQQITRDFSVQIKFPDREEN 915 HSP 3 Score: 137.887 bits (346), Expect = 7.883e-33 Identity = 126/451 (27.94%), Postives = 216/451 (47.89%), Query Frame = 2
Query: 368 NSFTEEITAKPEH-HRFLIGRNGANIQKLRESTGARIVFPTRQDDNKEIITIIGKKESVQQAKKELEAKIEALSNVVES-EILIDPKYHKHLAARRAQILNDLSEEFGGVTISLPKDQATSK-VAVKGAKECVEGAKNRLKEIVDDLEQMTEIQCIVVQKHHRNLLGNKGKYVQDISAKF-SVQIKFPDRRKXXXXXXXXXXXXXXVNKNDIIIILGRKDNAENA----KAALMELIPVSKEVMIPF--DNHRFIIGQKGAGIRKLMDDHDVNINVPPPERKEEIIIVTGPIANVEKA-IIALNVRNDEIESGNEDRRLRQFELILDVPHRHHPKLIGRKGAVIQKLRDDF-GVMINVPSPKTPTEDDKADQIKLIGYEDRCVKAKAAIDEMIRELEEQMVMEIEIDSR----IHNRIIGPRGKSVRKLMDQFKVDIRFPKGE-KDKCVVT 1669
NSFT A P HRF+IG+ G N+ K+ + + T +D IT+ G E V A++++E ++ L N ++ EI ID K+H+HL + +N + +++ V++ +P D S + ++G + V+ AK L E+ +E I+ Q+ HR ++G KG+ +++I KF V I FPD K+DI+ + G K+ E + + +L+ S + +P H+ IIG+ GA I+K+ ++ + I++P E II+TG AN E A L+++ D E+ + +P + H LIG KG +I+ + ++ GV I+ P E +D + + G KAK +++ EE+ +D R H +IG G +RK+ D + FP E KD+ ++T
Sbjct: 362 NSFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEGEDK---ITLEGPTEDVNVAQEQIEGMVKDLINRMDYVEINIDHKFHRHLIGKSGANINRIKDQY-KVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELASRMENERTKDLIIEQRFHRTIIGQKGERIREIRDKFPEVIINFPD----------------PAQKSDIVQLRGPKNEVEKCTKYMQKMVADLVENSYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAENSNSETIIITGKRANCEAARSRILSIQKDLANIA---------EVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHF-----PVEGSGSDTVVIRGPSSDVEKAK---KQLLHLAEEKQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARVIFPAAEDKDQDLIT 775 HSP 4 Score: 135.961 bits (341), Expect = 3.445e-32 Identity = 115/454 (25.33%), Postives = 219/454 (48.24%), Query Frame = 2
Query: 371 SFTEEITAKPEHHRFLIGRNGANIQKLRESTGARIVFPTRQDDNKEIITIIGKKESVQQAKKELEAKIEALSNVVESEILIDPKYHKHLAARRAQILNDLSEEFGGVTISLPKDQATSKVAVKGAKECVEGAKNRLKEIVDDL-EQMTEIQCIVVQKHHRNLLGNKGKYVQDISAKFSVQIKFPDRRKXXXXXXXXXXXXXXVNKNDIIIILGRKDNAENAKAALMELIP-----VSKEVMIPFDNHRFIIGQKGAGIRKLMDDH-DVNINVPPPERKEEIIIVTGPIANVEKAIIALN-VRNDEIESGNEDRRLRQFELILDVPHRHHPKLIGRKGAVIQKLRDDFGVMINVPSPKTPTEDDKADQIKLIGYEDRCVKAKAAIDEMIRELEEQMVMEIEIDSRIHNRIIGPRGKSVRKLMDQF-KVDIRFP--KGEKDKCVVTGLEENCEACK 1699
+ T + K H+++IG G ++Q++ E TG + P D E + + G+ E + QA E+ AK + + S + H+ + ++ Q L ++++ V I + K+ ++G E V A+ +++ +V DL +M ++ + K HR+L+G G + I ++ V ++ P + K+++I I G + AK L+EL +K+++I HR IIGQKG IR++ D +V IN P P +K +I+ + GP VEK + + D +E+ + + + + + H +IG+ GA I+K+R++ I++P+ E+ ++ I + G C A++ I + ++L +E+ I +++HN +IG +G+ +R +M++ V I FP D V+ G + E K
Sbjct: 295 TTTIAVEVKKSQHKYVIGPKGNSLQEILERTGVSVEIPP-SDSISETVILRGEPEKLGQALTEVYAKANSFTV---SSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEF--TEGEDKITLEGPTEDVNVAQEQIEGMVKDLINRMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSE----------------KSNLIRIEGDPQGVQQAKRELLELASRMENERTKDLIIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKSDIVQLRGPKNEVEKCTKYMQKMVADLVENS--------YSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPA-----ENSNSETIIITGKRANCEAARSRILSIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAK 713 HSP 5 Score: 122.479 bits (306), Expect = 3.990e-28 Identity = 119/458 (25.98%), Postives = 209/458 (45.63%), Query Frame = 2
Query: 359 RLENSFTEEITAKPEHHRFLIGRNGANIQKLRESTGARIVFPTRQDDNKEIITIIGKKESVQQAKKE-LEAKIEALSNVVESEILIDPKYHKHLAARRAQILNDLSEEFGGVTISLPKDQATSKVAVKGAKECVEGAKNRLKEIVDDLEQMTEIQCIVVQK-HHRNLLGNKGKYVQDISAKFSVQIKFPDRRKXXXXXXXXXXXXXXVNKNDIIIILGRKDNAENAKAALMELIP-----VSKEVMIPFDNHRFIIGQKGAGIRKLMDDH-DVNINVPPPERKEEIIIVTGPIANVEKAIIALNVRNDEIESGNEDRRLRQFELILDVPHRHHPKLIGRKGAVIQKLRDDFGVMINVPSPKTPTEDDKADQIKLIGYEDRCVKAKAAIDEMIRELEEQMVMEIEIDSRIHNRIIGPRGKSVRKLMDQFK---------------VDIRFPKGEKDKCV 1663
RL+ + + EHHRF+IG+NG +Q L T +I P R DD I I G KE +++A+ E L E VE + ++ +H +A +++ ++ +E G P +++ G KE + A R+K+I ++ ++ T + V+K H+ ++G KG +Q+I + V ++ P ++ +I+ G E AL E+ V P HRFIIG+KG + K+ V+I E K I + GP +V NV ++IE +D R + +++ H+ H LIG+ GA I +++D + V + +P + +K++ I++ G +AK + E+ +E + ++ I+ R H IIG +G+ +R++ D+F V +R PK E +KC
Sbjct: 146 RLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIP-RPDDPSNQIKITGTKEGIEKARHEVLLISAEQDKRAVE-RLEVEKAFHPFIAGPYNRLVGEIMQETGTRINIPPPSVNRTEIVFTGEKEQLAQAVARIKKIYEEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPSDSI----------------SETVILRG---EPEKLGQALTEVYAKANSFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEGEDK---ITLEGPTEDV-------NVAQEQIEGMVKDLINRMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPP-----DSEKSNLIRIEGDPQGVQQAKRELLELASRMENERTKDLIIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKSDIVQLRGPKNEVEKCT 567 The following BLAST results are available for this feature:
BLAST of TCONS_00059160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.