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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059159 ID=TCONS_00059159|Name=TCONS_00059159|organism=Clytia hemisphaerica|type=transcript|length=3123bpRun BLAST on NCBI protein sequence of TCONS_00059159-protein >TCONS_00059159-protein ID=TCONS_00059159-protein|Name=TCONS_00059159-protein|organism=Clytia hemisphaerica|type=polypeptide|length=700bp MEHGQDIPLNINGAIGDINSSKLLNGSYSPEEPALTNGDSHATTTTSEDARun BLAST on NCBI transcript from alignment at scaffold_319:27197..35330+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059159 ID=TCONS_00059159|Name=TCONS_00059159|organism=Clytia hemisphaerica|type=transcript|length=8134bp|location=Sequence derived from alignment at scaffold_319:27197..35330+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_319:27197..35330+ >TCONS_00059159 ID=TCONS_00059159|Name=TCONS_00059159|organism=Clytia hemisphaerica|type=CDS|length=14721bp|location=Sequence derived from alignment at scaffold_319:27197..35330+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059159 vs. Swiss-Prot (Human)
Match: VIGLN (Vigilin OS=Homo sapiens GN=HDLBP PE=1 SV=2) HSP 1 Score: 598.201 bits (1541), Expect = 0.000e+0 Identity = 309/577 (53.55%), Postives = 428/577 (74.18%), Query Frame = 3
Query: 1074 SQVFKIPFEERRFKNLTPFVGDVDKQNQIILDVMQKTGATIEVSVTKDQCLTIMVSGKREAARDARARITAGLQTQASIEMVTPKEHHKFILGKGGKRLQELELLTQTKITIPKESDI---IRIVGTKEGIDRAKHEIQLISDEQAKLAFERLNIPKIYHPFICGPDNEKAKEIANATGARINIPPASVEKDEMTVAGEKDAVQKAVQIIMDIYKDKEKRTKTVSVEVKKTQHKYVNGPRGAGIQDILRTTGVSIEMPPAGSDNVTITLRGDPDKLGNALTLLYEKANSVISTEINAPTWLHRFIIGRQGANXXXXXXDLDNKVHVEFVE--NKIMISGPPTEVQXXXXXXXXXXXXXXXTMSYEDIKVDQKWHRHIIGKAGSNIGRIKNETGTSINIPSDEEKSNVIRIEGSPDGVAAAKKAILDMASKMDNEKSRDIIIENKLHKNIIGQKGDKVREIREKFPDVQISFPDADKKSDVVTLRGPKEDVDKCFNHMKKLVTELVASSYKCEVPIMKRFHGNVIGRAGANIKKIKEETGTQIDIPAENSTSDVIIVTGHKAQAEKARDMILKIQNEL 2789
+QVF +P EER++K++ F G+ +Q +I L++MQ+TGA +E+S+ KDQ L+IMVSGK +A AR I A LQTQAS + PKEHH+F++GK G++LQ+LEL T TKI IP+ D I+I GTKEGI++A+HE+ LIS EQ K A ERL + K +HPFI GP N EI TG RINIPP SV + E+ GEK+ + +AV I IY++K+K+T T++VEVKK+QHKYV GP+G +Q+IL TGVS+E+PP+ S + T+ LRG+P+KLG ALT +Y KANS + + AP+WLHRFIIG++G N+ KI + + KVH+EF E +KI + GP +V A+ +E +K+L N M Y +I +D K+HRH+IGK+G+NI RIK++ S+ IP D EKSN+IRIEG P GV AK+ +L++AS+M+NE+++D+IIE + H+ IIGQKG+++REIR+KFP+V I+FPD +KSD+V LRGPK +V+KC +M+K+V +LV +SY VPI K+FH N+IG+ GANIKKI+EE+ T+ID+PAENS S+ II+TG +A E AR IL IQ +L
Sbjct: 77 TQVFHVPLEERKYKDMNQF-GE-GEQAKICLEIMQRTGAHLELSLAKDQGLSIMVSGKLDAVMKARKDIVARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISAEQDKRAVERLEVEKAFHPFIAGPYNRLVGEIMQETGTRINIPPPSVNRTEIVFTGEKEQLAQAVARIKKIYEEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPSDSISETVILRGEPEKLGQALTEVYAKANSFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMP-KVHIEFTEGEDKITLEGPTEDVNVAQEQIEGMVKDLINRMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELASRMENERTKDLIIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKSDIVQLRGPKNEVEKCTKYMQKMVADLVENSYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAENSNSETIIITGKRANCEAARSRILSIQKDL 650 HSP 2 Score: 176.407 bits (446), Expect = 8.436e-45 Identity = 155/578 (26.82%), Postives = 270/578 (46.71%), Query Frame = 3
Query: 1113 KNLTPFVGDVDKQNQIILDVMQKTGATIEVSVTKDQCLTIMVSGKREAARDARARITAGLQTQ----ASIEMVTPKEHHKFILGKGGKRLQELELLTQTKITIPKESDIIRIV---GTKEGIDRAKHEIQLISDEQAKLAFERLNIPKIYHPFICGPDNEKAKEIANATGARINIPPASVE----KDEMTVAGEKDAVQKAVQIIMDIYKDKEKRTKTVSVEVKKTQHKYVNGPRGAGIQDILRTTGVSIEMPPAGSDNVTITLRGDPDKLGNALTLLYEKANSV---ISTEINAPTWLHRFIIGRQGANXXXXXXDLDNKVHVEFVE-----NKIMISGPPTEVQXXXXXXXXXXXXXXXTMSYEDIKVDQKWHRHIIGKAGSNIGRIKNETGTSINIPSDEEKSNVIRIEGSPDGVAAAKKAILDMASKMDNEKSRDIIIENKLHKNIIGQKGDKVREIREKFPDVQISFPDADKKSDVVTLRGPKEDVDKCFNHMKKLVTELVASSYKCEVPIMKRFHGNVIGRAGANIKKIKEETGTQIDIP-AENSTSDVIIVTGHK-AQAEKARDMILKIQN 2783
K PF+ N+++ ++MQ+TG I + I+ +G++E A ARI + + +I + K HK+++G G LQE+ T + IP I V G E + +A E+ ++ + P H FI G +K + +A T +P +E +D++T+ G + V A + I + KD R V + + H+++ G GA I I VS+ +PP + I + GDP + A L E A+ + + ++ HR IIG++G + I+D +V + F + + + + GP EV+ ++ + +L + + +++H++IIGK G+NI +I+ E+ T I++P++ S I I G AA+ IL + + N ++ I KLH ++IG KG +R I E+ V I FP SD V +RGP DV+K + L E S+ ++ +H +IG+ G I+K+++ TG ++ P AE+ D+I + G + A E +++ IQN
Sbjct: 231 KAFHPFIAG--PYNRLVGEIMQETGTRINIPPPSVNRTEIVFTGEKEQLAQAVARIKKIYEEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPSDSISETVILRGEPEKLGQALTEVYAKAN---SFTVSSVAAPSWLHRFIIG---KKGQNLAKITQ---QMPKVHIEFTEGEDKITLEGPTEDVNVAQEQIEGMVKDLINRMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELASRMENERTKDLIIEQRFHRTIIGQKG-ERIREIRDKFPEVIINFPDPAQKSDIVQLRGPKNEVEKCTKYMQKMVADLVENSYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAENSNSETIIITGKRANCEAARSRILSIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARVIFPAAEDKDQDLITIIGKEDAVREAQKELEALIQN 796 HSP 3 Score: 169.088 bits (427), Expect = 1.933e-42 Identity = 136/497 (27.36%), Postives = 263/497 (52.92%), Query Frame = 3
Query: 1335 HKFILGKGGKRLQELELLTQTKITIP---KESDIIRIVGTKEGIDRAKHEIQLISDEQAKLAFERLNIPKIYHPFICGPDNEKAKEIANA-TGARINIPPASVEKDEMTVAGEKDAVQKAVQIIMDIYKDKEKRTKTVSVEVKKTQHKYVNGPRGAGIQDILRTTGVSIEMPPAGSDNVTITLRGDPDKLGNA----LTLLYEKANSVISTEINAPTWLHRFIIGRQGANXXXXXXDLDNKVHVEF-VE----NKIMISGPPTEVQXXXXXXXXXXXXXXXTMSYEDIKVDQKWHRHIIGKAGSNIGRIKNETGTSINIPSDEEK-SNVIRIEGSPDGVAAAKKAILDMASKMDNEKSRDIIIENKLHKNIIGQKGDKVREIREKFPDVQISFPDADKKSDVVTLRGPKEDVDKCFNHMKKLVTELVAS-SYKCEVPIMKRFHGNVIGRAGANIKKIKEETGTQIDIP-----AENSTSDVIIVTGHKA-QAEKARD 2762
H+ ++GK G + ++ + + IP ++S++IRI G +G+ +AK E+ ++ + L I + +H I G E+ +EI + IN P + + D + + G K+ V+K + + + D + + ++SV + K HK + G GA I+ I + I++P S++ TI + G A L++ + AN + E++ P LH +IG +G I+ I+++ VH+ F VE + ++I GP ++V+ A+ L +E + DI+ ++H+ +IGK G I ++++ TG + P+ E+K ++I I G D V A+K + + +DN ++++ K H++ + ++G +REI E++ V +SFP + +SD VTL+G K+ V+ +++++ +L A + +C +P ++FH +V+G G+ I++I + QI P A +ST V+ G +A + +A+D
Sbjct: 447 HRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELASRMENERTKDLIIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKSDIVQLRGPKNEVEKCTKYMQKMVADLVENSYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAENSNSETIIITGKRANCEAARSRILSIQKDLAN-IAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGG-VHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARVIFPAAEDKDQDLITIIGKEDAVREAQKELEALIQNLDNVVEDSMLVDPKHHRHFVIRRGQVLREIAEEYGGVMVSFPRSGTQSDKVTLKGAKDCVEAAKKRIQEIIEDLEAQVTLECAIP--QKFHRSVMGPKGSRIQQITRDFSVQIKFPDREENAVHSTEPVVQENGDEAGEGREAKD 939 HSP 4 Score: 147.902 bits (372), Expect = 5.949e-36 Identity = 159/597 (26.63%), Postives = 270/597 (45.23%), Query Frame = 3
Query: 1059 MSSDSSQVFKIPFEERRFKNLTPFVGDVDKQNQIILDVMQKTGATIEVSVTKDQCLTIMVSGKREAARDARAR---ITAGLQTQASIEMVTPKEHHKFILGKGGKRLQELELLTQTKITIPKES---DIIRIVGTKE----GIDRAKHEIQLISDEQAKLAFERLNIPKIYHPFICGPDNEKAKEIANATGARINIPPASVEKDEMTVAGEKDAVQKAVQIIMDIYKDKEKRTKTVSVEVKKTQHKYVNGPRGAGIQDILRTT-GVSIEMPPAGSDNVTITLRGDPDKLGNALT----LLYEKANSVISTEINAPTWLHRFIIGRQGANXXXXXXDLDNKVHV---EFVENKIMISGPPTEVQXXXXXXXXXXXXXXXTMSYEDIKVDQKWHRHIIGKAGSNIGRIKNE-TGTSINIPSDEEKSNVIRIEGSPDGVAAAKKAILDMASKM-DNEKSRDIIIENKLHKNIIGQKGDKVREIREKFPDVQISFPDADKKSDVVTLRGPKEDVDKCFNHMKKLVTELVASSYKCEVPIMKRFHGNVIGRAGANIKKIKEETG-TQIDIPAENSTSDVIIVTGHKAQAEKARDMILKIQNE 2786
+ + +S IP E RF + K + + D+ KT I++ D I ++G +E AR I+A +A + K H FI G + + E+ T T+I IP S I G KE + R K + + +A E + K H ++ GP +EI TG + IPP+ + + + GE + K Q + ++Y T + SV H+++ G +G + I + V IE G D ITL G + + A ++ + N + EIN HR +IG+ GANI +I V + N I I G P VQ A+ L ++N + +D+ ++Q++HR IIG+ G I I+++ IN P +KS+++++ G + V K + M + + +N S + I + HKNIIG+ G +++IRE+ + +I P + S+ + + G + + + + + + +L A+ + EV I + H ++IG G I+ I EE G I P E S SD +++ G + EKA+ +L + E
Sbjct: 147 LQTQASATVAIPKEHHRFV--------IGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISAEQDKRAVERLEVEKAFHPFIAGPYNRLVGEIMQETGTRINIPPPSVNRTEIVFTGEKEQLAQAVARIKKIYEEKKKKTTTIAVE---VKKSQHKYVIGPKGNSLQEILERTGVSVEIPPSDSISETVILRGEPE---KLGQALTEVYAKANSFTVS-SVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFT-EGEDK--ITLEGPTEDVNVAQEQIEGMVKDLINRMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELASRMENERT-KDLIIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKSDIVQLRGPKNEVEKCTKYMQKMVADLVENSYSISVPIFKQFHKNIIGKGGANIKKIREE-SNTKIDLPAENSNSETIIITGKRANCEAARSRILSIQKDL-ANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHLAEE 722 HSP 5 Score: 144.821 bits (364), Expect = 5.490e-35 Identity = 149/600 (24.83%), Postives = 285/600 (47.50%), Query Frame = 3
Query: 1161 ILDVMQKTGATIEVSVTKDQCLTIMVSGKREAARDARARITA---GLQTQASIEMVTPKEHHKFILGKGGKRLQE-LELLTQTKITIPKE---SDIIRIVGTKEGIDRAKHEIQLISDEQAKLAFE-RLNIPKIYHPFICGPDNEKAKEIANATGARINIPPASVEKDE--MTVAGEKDAVQKAVQIIMDIYKDKEKRTKTVSVEVKKTQHKYVNGPRGAGIQDILRTTG-VSIEMPPAGSDNVTITLRGDPDKLGNA---LTLLYEKANSVISTEINAPTWLHRFIIGRQGANXXXXXXDL----------DNKVHV-------------EFVENKIMISGPPTEV-------QXXXXXXXXXXXXXXXTMSYEDIKVDQKWHRHIIGKAGSNIGRIKNETGTSINIPSDEEKSNVIRIEGSPDGVAAAKKAILDMASKMDNEKS--------RDIIIENKLHKNIIGQKGDKVREIREKFPDVQISFPDAD---KKSDVVTLRGPKEDVDKCFNHMKKLVTELVASSYKCEVPIMKRFHGNVIGRAGANIKKIKEETGTQIDIPAENSTS-DVIIVTGHKAQAEKARDMILKIQNELV 2792
I + +++ I++ TI+++GKR AR+RI + L A +E+ P + H ++G G+ ++ +E I P E SD + I G +++AK ++ +++E+ +F + YH F+ G K +++ ++TGAR+ I PA+ +KD+ +T+ G++DAV++A + + + ++ + + S+ V H++ RG +++I G V + P +G+ + +TL+G D + A + + E + ++ E P HR ++G +G+ I++I +D +N VH E E K G P + + E ++ E ++V HR++IG+ GS I ++ +E +I++P+ E +S++I I G + AK +L+ ++ E+ + ++ K H IIG+KG + +IR + DV I FPD D + D +T+ G +++ + + + ++V EL +VP+ R H +IG G I+KI +E I P + + + VTG E+A D IL ++ E +
Sbjct: 604 IKKIREESNTKIDLPAENSNSETIIITGKRANCEAARSRILSIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARV-IFPAAEDKDQDLITIIGKEDAVREAQKELEALIQNLDNVVED-SMLVDPKHHRHFVIRRGQVLREIAEEYGGVMVSFPRSGTQSDKVTLKGAKDCVEAAKKRIQEIIEDLEAQVTLECAIPQKFHRSVMGPKGSRIQQITRDFSVQIKFPDREENAVHSTEPVVQENGDEAGEGREAKDCDPGSPRRCDIIIISGRKEKCEAAKEALEALVPVTIE-VEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERVKELQAEQEDRALRSFKLSVTVDPKYHPKIIGRKGAVITQIRLEH-DVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGEL-EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEEEYL 1198 The following BLAST results are available for this feature:
BLAST of TCONS_00059159 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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