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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059158 ID=TCONS_00059158|Name=TCONS_00059158|organism=Clytia hemisphaerica|type=transcript|length=2491bp
ATTTGACTTCGGTAGAAAAATGAATGATAGAGAAAAAGCTGACATTAATG
GAAGAAAAGCAGTGGTATTTATTTGTATCTCTGTTCGACTTAGACGCTTT
GAAAATATCAAGATGGCTAACACTCTCCCAACTAGTCTAGATGATATTCC
TTAAACATTCTTGACTTTGGGCCGTTCAACTTTGATCGAGCGCGCGATGG
AATCCTCAGTTTTTGTACTATTAAGGTATTATGATATGGAGTAGGAAATC
TTTCGAAAAAAGTCTTTTTAAAGCTCTCTTTCCACCGAGTGTGTCTCTTC
TCatttttaaaccaaaatttaaTACTTCTAGGGGTAAAGTTCTGGGGTCT
GGTCTCCACATTTCCGTCCTTCAGAAAACCTAGTGGCAACCCTGTTCTGT
TGTTCAACTTCAGGTTAACAGTAGATTGGATGAAATGAAAGGGTATGTCG
AAGAGAAAACCCTCGAATTGGAAAAAGATTTGGTGAACCGTGAATACAAG
TCTTTATTCAAACTATGGGCAAACTGTGTAAAAGAAGCCACAAAAGAAAA
GGTTAATGAATGCATGGAAGATGCAACAAAACAGATCATGGCTTCTCGTC
CCAAATTCGCCATCTTTGGTGGCGATGTCCAAGCTGATCACCAACCTTCT
ATTTCTGATGTGAAACGTATTGAAGCCAACCTCATCACCTTCCGAGATTA
CGTCATTATGAGTCTTGCTAGTTTATCAACATTGGTGGCTACTTTCAAAG
ATGATCCCGCAAAGAAAAGAGAGTACATCAGATATGCTAATGATCTTAAT
ACCGAAATCAAATGGTGCGTTGACTACGCACGAAACGCCGTTTTCATCAT
CAAGAAGATGCATGCCGATTTTTGTCATTGTGATGCAACAAAGAAATGCA
CTGACTTTACTAAGTACTACGAAGGCTGGCCGGGTGTAAATACAATGAGT
TGGTTAGTATGCAGCTGTGTCATCGATCCTGCTGATGTTTCCACACGTGC
TTGCAAGGTCAAAATTGCAATGCGCGTTGATGGAAAACGGGTATACACCA
GGTACGATTTACCAACAGCCGACTACTTCCGAGCAGCTAAGATGCTTGGA
CGACGAGAAGTCGAGAAACAAGTTGGAAAATACATCACAGACATGTTGGC
AACTATCAATAATTACTGGCAAAATGAGCTGCTGGATTTAATACCTGATT
GGGAAAACCTTGAAGTTGCATTATCAAAAGATGAAATCTCTTCTCGAGAT
GAGATTAAACAGCGAAGAAAGGTTGTGAGATACAGTGAAGATTTCAAACG
ACGTTTAGACCAGGTCAATGATGAGATGGCTCAAGAATTGGATGCCGTCT
ACGCCGAAACATTTGAGCATCGTGACGAGATTCCACAAGACGAACAAACT
CGATCATTCGAAACATCATTTTACAATGATCCTATACCAGCAAAACGTCG
ATCCTTTAATGATTTTGCTCCCCGTCGCTTCGCGATGCCACCTCGAGACT
TTGTCCCCCGTCGCTCAATGTATGATTACGCAACAAAAGGTCGTTTATTA
AAAGATTTCTACCAACAACGAACGCAAACCTTCCGCAATGCTCAAGATGA
AAGGAGATACAGTCCANCCTCGAGACTTTGTCCCCCGTCACTCAATGTAT
GATTACGCAACAAAAGGTCGTTTATTAAAAGATTTCTACCAACAACGAAC
GCAAACCTTCCGCAATGCTCAAGATGAAAGGAGATACAGTCCACGAAAAT
AAGATTTGGAAAGGCTCGAAGGATCACCGCTTGACTAATATATCTTGTAA
TTATTCGTTATAGGcactttgtaggttttaagttgatttgttgaatattt
gtaaattgattttttttgatcaACAGAGTGAAaaagattatctttttagt
AGGGGGNCCGCTTGACTAATATATCTTGTAATTATTCGTTATAGGcactt
tgtaggttttaagttgatttgttgaatatttgtaaattgattttttttga
tcaacagagtgaaaaaaataatctttttagTAGGGGGGAATtttaaaatc
gctcgatttttttagtcaaagcactaaGGGGTagacaaatcaaaataaat
tgggtgccaattttttttcggacactttggtgtgattttcggacaaataa
gacggtctcaggcaaaaatcatagggtgaaaaattaatgaaaatttttgc
ttgagaaaacggagacctgttgtatatttttggaaatatctgaaaaaatt
aagattagtgatatattgcgagtataggtgatttcggtacctaactcgag
atattgagcttccaaaagcgcaaaaactggacaaaacagctgtttctggc
tgaaaaaactgaaaacaacgttaagagttaaaactctaaccttccaacct
actttagagcacttgcaaatctattgtggtttcaaaactttgaatttccc
tttttctcaaatattacgaccatgattgttgTAAAATGCTG Run BLAST on NCBI transcript from alignment at scaffold_319:5450..9155+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059158 ID=TCONS_00059158|Name=TCONS_00059158|organism=Clytia hemisphaerica|type=transcript|length=3706bp|location=Sequence derived from alignment at scaffold_319:5450..9155+ (Clytia hemisphaerica)
ATTTGACTTCGGTAGAAAAATGAATGATAGAGAAAAAGCTGACATTAATG
GAAGAAAAGCAGTGGTATTTATTTGTATCTCTGTTCGACTTAGACGCTTT
GAAAATATCAAGATGGCTAACACTCTCCCAACTAGTCTAGATGATATTCC
TTAAACATTCTTGACTTTGGGCCGTTCAACTTTGATCGAGCGCGCGATGG
AATCCTCAGTTTTTGTACTATTAAGGTATTATGATATGGAGTAGGAAATC
TTTCGAAAAAAGTCTTTTTAAAGCTCTCTTTCCACCGAGTGTGTCTCTTC
TCatttttaaaccaaaatttaaTACTTCTAGGGGTAAAGTTCTGGGGTCT
GGTCTCCACATTTCCGTCCTTCAGAAAACCTAGTGGCAACCCTGTTCTGT
TGTTCAACTTCAGGTTAACAGTAGATTGGATGAAATGAAAGGGTATGTCG
AAGAGAAAACCCTCGAATTGGAAAAAGATTTGGTGAACCGTGAATACAAG
TCTTTATTCAAACTATGGGCAAACTGTGTAAAAGAAGCCACAAAAGAAAA
GGTTAATGAATGCATGGAAGATGCAACAAAACAGATCATGGCTTCTCGTC
CCAAATTCGCCATCTTTGGTGGCGATGTCCAAGCTGATCACCAACCTTCT
ATTTCTGATGTGAAACGTATTGAAGCCAACCTCATCACCTTCCGAGATTA
CGTCATTATGAGTCTTGCTAGTTTATCAACATTGGTGGCTACTTTCAAAG
ATGATCCCGCAAAGAAAAGAGAGTACATCAGATATGCTAATGATCTTAAT
ACCGAAATCAAATGGTGCGTTGACTACGCACGAAACGCCGTTTTCATCAT
CAAGAAGATGCATGCCGATTTTTGTCATTGTGATGCAACAAAGAAATGCA
CTGACTTTACTAAGTACTACGAAGGCTGGCCGGGTGTAAATACAATGAGT
TGGTTAGTATGCAGCTGTGTCATCGATCCTGCTGATGTTTCCACACGTGC
TTGCAAGGTCAAAATTGCAATGCGCGTTGATGGAAAACGGGTATACACCA
GGTACGATTTACCAACAGCCGACTACTTCCGAGCAGCTAAGATGCTTGGA
CGACGAGAAGTCGAGAAACAAGTTGGAAAATACATCACAGACATGTTGGC
AACTATCAATAATTACTGGCAAAATGAGCTGCTGGATTTAATACCTGATT
GGGAAAACCTTGAAGTTGCATTATCAAAAGATGAAATCTCTTCTCGAGAT
GAGATTAAACAGCGAAGAAAGGTTGTGAGATACAGTGAAGATTTCAAACG
ACGTTTAGACCAGGTAAGAAAGAAGTGCTTGTAAGAATTTTACAAGGGTC
AAATAATTATGTATTTTATTCCATGATTGCCACATTTCAATTTCCATATT
CTACATTGAGTTATCTGACAGATTAGCCAGTGTACGCGAACAGTGTACAC
ATTTAAGTGCCAACCCTGCTCTGAAaaactcgggtaacttaatgcatgtc
ccagaattgcattaatttttccgccccagttccagtccctaaaccataac
aaactatacatttttggaagcgtatttggatNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNtttctcagtataattagagatatgttaaa
aaaacctgattatgacatcatgattgatgacgtcataaatacaaaaagtt
gaatatctcgagaaatataaatcaaaggtttatgaaatttggaccagtga
taaagtacattgagatgtttcaaaaacttttaaaagtatttccaaaaatt
aatgacgtcagtaaaaattgcaagaattcgaatttttgcgataaaatgct
gacatcagcaaattttcaaattttttgaaaaaaattctccttctCTTGAT
TGGTTCTATCATTGGTCAAAATGTCATAAAGAtttgagtattagttcttg
agatattcaatttttaaaaattatgacgtcataaataatgacgtcataat
catgttttcttaaaaaaactcaaatNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNatgcaattctgggacatgcattaagt
tacccgagaaaTCTTGAAACTGAAGTGCTTTGTCTTAACAAATACAGAAC
AGAATATATATATAGGTCATTTAAGACCTTTAGATTGAGCAAATAAATTC
CattttatttgacttttgatTTTCTCAGGTCAATGATGAGATGGCTCAAG
AATTGGATGCCGTCTACGCCGAAACATTTGAGCATCGTGACGAGATTCCA
CAAGACGAACAAACTCGATCATTCGAAACATCATTTTACAATGATCCTAT
ACCAGCAAAACGTCGATCCTTTAATGATTTTGCTCCCCGTCGCTTCGCGA
TGCCACCTCGAGACTTTGTCCCCCGTCGCTCAATGTATGATTACGCAACA
AAAGGTCGTTTATTAAAAGATTTCTACCAACAACGAACGCAAACCTTCCG
CAATGCTCAAGATGAAAGGAGATACAGTCCANCCTCGAGACTTTGTCCCC
CGTCACTCAATGTATGATTACGCAACAAAAGGTCGTTTATTAAAAGATTT
CTACCAACAACGAACGCAAACCTTCCGCAATGCTCAAGATGAAAGGAGAT
ACAGTCCACGAAAATAAGATTTGGAAAGGCTCGAAGGATCACCGCTTGAC
TAATATATCTTGTAATTATTCGTTATAGGcactttgtaggttttaagttg
atttgttgaatatttgtaaattgattttttttgatcaACAGAGTGAAaaa
gattatctttttagtAGGGGGNCCGCTTGACTAATATATCTTGTAATTAT
TCGTTATAGGcactttgtaggttttaagttgatttgttgaatatttgtaa
attgattttttttgatcaacagagtgaaaaaaataatctttttagTAGGG
GGGAATtttaaaatcgctcgatttttttagtcaaagcactaaGGGGTaga
caaatcaaaataaattgggtgccaattttttttcggacactttggtgtga
ttttcggacaaataagacggtctcaggcaaaaatcatagggtgaaaaatt
aatgaaaatttttgcttgagaaaacggagacctgttgtatatttttggaa
atatctgaaaaaattaagattagtgatatattgcgagtataggtgatttc
ggtacctaactcgagatattgagcttccaaaagcgcaaaaactggacaaa
acagctgtttctggctgaaaaaactgaaaacaacgttaagagttaaaact
ctaaccttccaacctactttagagcacttgcaaatctattgtggtttcaa
aactttgaatttccctttttctcaaatattacgaccatgattgttgTAAA
ATGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059158-exon-scaffold_319-1491911889:5450..6762 | TCONS_00059158-exon-scaffold_319-1491911889:5450..6762 | Clytia hemisphaerica | exon |
| TCONS_00059158-exon-scaffold_319-1510915933:5450..6762 | TCONS_00059158-exon-scaffold_319-1510915933:5450..6762 | Clytia hemisphaerica | exon |
| TCONS_00059158-exon-scaffold_319-1575043694:5450..6762 | TCONS_00059158-exon-scaffold_319-1575043694:5450..6762 | Clytia hemisphaerica | exon |
| TCONS_00059158-exon-scaffold_319-1491911889:7978..9155 | TCONS_00059158-exon-scaffold_319-1491911889:7978..9155 | Clytia hemisphaerica | exon |
| TCONS_00059158-exon-scaffold_319-1510915933:7978..9155 | TCONS_00059158-exon-scaffold_319-1510915933:7978..9155 | Clytia hemisphaerica | exon |
| TCONS_00059158-exon-scaffold_319-1575043694:7978..9155 | TCONS_00059158-exon-scaffold_319-1575043694:7978..9155 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_319 | supercontig | scaffold_319:5450..9155 + |
Blast
The following BLAST results are available for this feature:
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