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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059152 ID=TCONS_00059152|Name=TCONS_00059152|organism=Clytia hemisphaerica|type=transcript|length=1717bp
cgaaaagatatttgtgaatTAAAGAGGAAATCTCAAAGAAAATCACACAA
TGAAGGGGTTGTTGCATCAAATGGAAGTACCCTGAGAGATGGAGAGACAA
GCTTACCAGAAGACATTCCGTTAAGAGATAAGCGGGATAAAAGTAATAAA
GTTAATGATAAGATCGAACAAACAATAAGAAAAGAGAGACAAAGTTACGC
CGAAGGTTTAACCATACACGGTGCTAATCGAATCGCCACAGGACGCCCTT
TAAATCGAATTCTATGGACAATACTTGTTATTGCCTCTTTCGTGGCAGCT
GTGATGATTTCAAAAGATCATTTCGATACATTCTTAACCCGCAAAACTAT
CATTCATACTAGTCATATTCCCCAACAAAATATGACATATCCCGCAATAA
CCATTTGTGATTGGCAGGGTCTAGCTAGAGAAAAACGCCATTTGAGTGGT
GGCCCGCCCATCTTTCCCCGCCCTCAAATGGTGGATGAGGACGTGCAGCT
TTGTAGTTTCAATATGTCAAATTGCGGATATAATGGTTCAGTATTGCTCA
ATGTCTACCAAACAGATTATGATTACTCGAATATCACCTATCTGCATCAT
TTAGTGACCAATGATGACACAACCAACTGTTTCTCAATAGACGCCATCGA
ATCACACCAGCAGATGGGTGTTTTAGACATTACAGCTTTATCGGACCGAT
CTGTCAATAATTTCTGGAGCATTATGCAAATTAACCCGACATCAGAAACT
TTCCCTGAAGCTTCTACTAAACGTTATTTCATGGGAGAAGGAAGCTACGA
AGCCCttatcagtcaaaaaataacaaaactgCTCGGTGAACCTTACACCG
ATTGTGTTAGAGGAAATGGTGAATATTCCCAAAACATATTCACAGGCAAC
TATACCATTGATAAATGCAAAAAAGGTTGCTTTTTAGAGAacgtttttga
aaaatgtggtgCTATTCCTCAAATGTATATAAAACATTTACGAGAGCCGA
AACGCTTTAAAAACAAGACACTTTTCAAAGTAGTCAAAGGTGAATCTTGT
TTTACAAGTGTTGAAAATGATAAAGCTTTACTTGGacaatgcaatgaaaa
atgctATTTACAACCTTGTTATAAAGAAGAAATCATCATCGATCTGGCCT
ACCATAAGACGCGATTTCCGAACATTTTGGAGATCTCATTCATGTTTAAA
TCATTCACAATCGAGTTTGCCGAAGAGGTGCCAGTTTACACTTGGCAaga
attgttttcaaattttggtggCTGTGTTGGTTTGATGACTGGAGCATCGA
TTCTCTCACTTTTTGAACTCTgtattttctttggtttgatcTTTATCGAT
TATTTTGACTTGTATAATAAGGTAAAGGTGAAATCAACAAAGACCTAACG
CGGGAGTTATGATCTCAAAGTCAATGTTCAACAACAAATTTTATCGGTTT
GCAATTGAAAAATAGCACTTACTTTGTCAAAGTTTTAAGGTGACActaac
gctctctaattcgattttcaaggggaactGGATCGTTGACGGTGACATTT
AATATTatatattatcgaataatgaagttgtatcgaatagtagaacgtcg
aattagagagcgtcaactctATTATTTCTACAATATTAACTCTAGGATTG
AAGTTCTTGTACCGTGTGGTGTGCAACTTTCACAtctttgtgttttattt
taatcgAATAATCGTTC Run BLAST on NCBI protein sequence of TCONS_00059152-protein >TCONS_00059152-protein ID=TCONS_00059152-protein|Name=TCONS_00059152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
RKDICELKRKSQRKSHNEGVVASNGSTLRDGETSLPEDIPLRDKRDKSNK
VNDKIEQTIRKERQSYAEGLTIHGANRIATGRPLNRILWTILVIASFVAA
VMISKDHFDTFLTRKTIIHTSHIPQQNMTYPAITICDWQGLAREKRHLSG
GPPIFPRPQMVDEDVQLCSFNMSNCGYNGSVLLNVYQTDYDYSNITYLHH
LVTNDDTTNCFSIDAIESHQQMGVLDITALSDRSVNNFWSIMQINPTSET
FPEASTKRYFMGEGSYEALISQKITKLLGEPYTDCVRGNGEYSQNIFTGN
YTIDKCKKGCFLENVFEKCGAIPQMYIKHLREPKRFKNKTLFKVVKGESC
FTSVENDKALLGQCNEKCYLQPCYKEEIIIDLAYHKTRFPNILEISFMFK
SFTIEFAEEVPVYTWQELFSNFGGCVGLMTGASILSLFELCIFFGLIFID
YFDLYNKVKVKSTKT Run BLAST on NCBI transcript from alignment at scaffold_318:139631..141347 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059152 ID=TCONS_00059152|Name=TCONS_00059152|organism=Clytia hemisphaerica|type=transcript|length=1717bp|location=Sequence derived from alignment at scaffold_318:139631..141347 (Clytia hemisphaerica)
GAACGATTATTcgattaaaataaaacacaaagaTGTGAAAGTTGCACACC
ACACGGTACAAGAACTTCAATCCTAGAGTTAATATTGTAGAAATAATaga
gttgacgctctctaattcgacgttctactattcgatacaacttcattatt
cgataatatatAATATTAAATGTCACCGTCAACGATCCagttccccttga
aaatcgaattagagagcgttagTGTCACCTTAAAACTTTGACAAAGTAAG
TGCTATTTTTCAATTGCAAACCGATAAAATTTGTTGTTGAACATTGACTT
TGAGATCATAACTCCCGCGTTAGGTCTTTGTTGATTTCACCTTTACCTTA
TTATACAAGTCAAAATAATCGATAAAgatcaaaccaaagaaaatacAGAG
TTCAAAAAGTGAGAGAATCGATGCTCCAGTCATCAAACCAACACAGccac
caaaatttgaaaacaattctTGCCAAGTGTAAACTGGCACCTCTTCGGCA
AACTCGATTGTGAATGATTTAAACATGAATGAGATCTCCAAAATGTTCGG
AAATCGCGTCTTATGGTAGGCCAGATCGATGATGATTTCTTCTTTATAAC
AAGGTTGTAAATagcatttttcattgcattgtCCAAGTAAAGCTTTATCA
TTTTCAACACTTGTAAAACAAGATTCACCTTTGACTACTTTGAAAAGTGT
CTTGTTTTTAAAGCGTTTCGGCTCTCGTAAATGTTTTATATACATTTGAG
GAATAGcaccacatttttcaaaaacgtTCTCTAAAAAGCAACCTTTTTTG
CATTTATCAATGGTATAGTTGCCTGTGAATATGTTTTGGGAATATTCACC
ATTTCCTCTAACACAATCGGTGTAAGGTTCACCGAGcagttttgttattt
tttgactgataaGGGCTTCGTAGCTTCCTTCTCCCATGAAATAACGTTTA
GTAGAAGCTTCAGGGAAAGTTTCTGATGTCGGGTTAATTTGCATAATGCT
CCAGAAATTATTGACAGATCGGTCCGATAAAGCTGTAATGTCTAAAACAC
CCATCTGCTGGTGTGATTCGATGGCGTCTATTGAGAAACAGTTGGTTGTG
TCATCATTGGTCACTAAATGATGCAGATAGGTGATATTCGAGTAATCATA
ATCTGTTTGGTAGACATTGAGCAATACTGAACCATTATATCCGCAATTTG
ACATATTGAAACTACAAAGCTGCACGTCCTCATCCACCATTTGAGGGCGG
GGAAAGATGGGCGGGCCACCACTCAAATGGCGTTTTTCTCTAGCTAGACC
CTGCCAATCACAAATGGTTATTGCGGGATATGTCATATTTTGTTGGGGAA
TATGACTAGTATGAATGATAGTTTTGCGGGTTAAGAATGTATCGAAATGA
TCTTTTGAAATCATCACAGCTGCCACGAAAGAGGCAATAACAAGTATTGT
CCATAGAATTCGATTTAAAGGGCGTCCTGTGGCGATTCGATTAGCACCGT
GTATGGTTAAACCTTCGGCGTAACTTTGTCTCTCTTTTCTTATTGTTTGT
TCGATCTTATCATTAACTTTATTACTTTTATCCCGCTTATCTCTTAACGG
AATGTCTTCTGGTAAGCTTGTCTCTCCATCTCTCAGGGTACTTCCATTTG
ATGCAACAACCCCTTCATTGTGTGATTTTCTTTGAGATTTCCTCTTTAat
tcacaaatatcttttcg Coding sequence (CDS) from alignment at scaffold_318:139631..141347 >TCONS_00059152 ID=TCONS_00059152|Name=TCONS_00059152|organism=Clytia hemisphaerica|type=CDS|length=1398bp|location=Sequence derived from alignment at scaffold_318:139631..141347 (Clytia hemisphaerica)
TTAGGTCTTTGTTGATTTCACCTTTACCTTATTATACAAGTCAAAATAAT
CGATAAAgatcaaaccaaagaaaatacAGAGTTCAAAAAGTGAGAGAATC
GATGCTCCAGTCATCAAACCAACACAGccaccaaaatttgaaaacaattc
tTGCCAAGTGTAAACTGGCACCTCTTCGGCAAACTCGATTGTGAATGATT
TAAACATGAATGAGATCTCCAAAATGTTCGGAAATCGCGTCTTATGGTAG
GCCAGATCGATGATGATTTCTTCTTTATAACAAGGTTGTAAATagcattt
ttcattgcattgtCCAAGTAAAGCTTTATCATTTTCAACACTTGTAAAAC
AAGATTCACCTTTGACTACTTTGAAAAGTGTCTTGTTTTTAAAGCGTTTC
GGCTCTCGTAAATGTTTTATATACATTTGAGGAATAGcaccacatttttc
aaaaacgtTCTCTAAAAAGCAACCTTTTTTGCATTTATCAATGGTATAGT
TGCCTGTGAATATGTTTTGGGAATATTCACCATTTCCTCTAACACAATCG
GTGTAAGGTTCACCGAGcagttttgttattttttgactgataaGGGCTTC
GTAGCTTCCTTCTCCCATGAAATAACGTTTAGTAGAAGCTTCAGGGAAAG
TTTCTGATGTCGGGTTAATTTGCATAATGCTCCAGAAATTATTGACAGAT
CGGTCCGATAAAGCTGTAATGTCTAAAACACCCATCTGCTGGTGTGATTC
GATGGCGTCTATTGAGAAACAGTTGGTTGTGTCATCATTGGTCACTAAAT
GATGCAGATAGGTGATATTCGAGTAATCATAATCTGTTTGGTAGACATTG
AGCAATACTGAACCATTATATCCGCAATTTGACATATTGAAACTACAAAG
CTGCACGTCCTCATCCACCATTTGAGGGCGGGGAAAGATGGGCGGGCCAC
CACTCAAATGGCGTTTTTCTCTAGCTAGACCCTGCCAATCACAAATGGTT
ATTGCGGGATATGTCATATTTTGTTGGGGAATATGACTAGTATGAATGAT
AGTTTTGCGGGTTAAGAATGTATCGAAATGATCTTTTGAAATCATCACAG
CTGCCACGAAAGAGGCAATAACAAGTATTGTCCATAGAATTCGATTTAAA
GGGCGTCCTGTGGCGATTCGATTAGCACCGTGTATGGTTAAACCTTCGGC
GTAACTTTGTCTCTCTTTTCTTATTGTTTGTTCGATCTTATCATTAACTT
TATTACTTTTATCCCGCTTATCTCTTAACGGAATGTCTTCTGGTAAGCTT
GTCTCTCCATCTCTCAGGGTACTTCCATTTGATGCAACAACCCCTTCATT
GTGTGATTTTCTTTGAGATTTCCTCTTTAattcacaaatatcttttcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059152-exon-scaffold_318-1491911889:139631..141347 | TCONS_00059152-exon-scaffold_318-1491911889:139631..141347 | Clytia hemisphaerica | exon |
| TCONS_00059152-exon-scaffold_318-1510915933:139631..141347 | TCONS_00059152-exon-scaffold_318-1510915933:139631..141347 | Clytia hemisphaerica | exon |
| TCONS_00059152-exon-scaffold_318-1575043694:139631..141347 | TCONS_00059152-exon-scaffold_318-1575043694:139631..141347 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_318 | supercontig | scaffold_318:139631..141347 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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