TCONS_00059131 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059131
Unique NameTCONS_00059131
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059131 ID=TCONS_00059131|Name=TCONS_00059131|organism=Clytia hemisphaerica|type=transcript|length=1430bp
AAGATCAAATTTTTAATATCAAGATTGAAATTGTCAGAGAAGAAGTTGAA
ATGACACTAGAAGAAGGGAAGTTATTGCGATCATGGTACCGAAAGCGGAA
GTACAATCTATCGGTCTTTATCGTGATGAAGTGTTTGTATGCTTTTGAGG
GATCGGCCATCTCTATATCAGCTCTCTACTattttcaaaacgttttgaaa
GTTAGGGATCCAAAGCTGTACTATTCATTGGCAACCGGAGCGCTCGCTTT
ATCCTCCATGTTTTCATCAGCTATAGTTGGCCGACACGTCGATCGTCATC
GAAACTTAAGACAAACATCTCTTGTTTTCGGATTGTTCAATATAGCAGGC
AACTTATTATACGTGTTACCATTCATGAATTGGCTACCTATCTTCGGAAG
ATTTTTATGTGGGATTGCTGATGGTGTAAGACCAGCATATGTAGGTGAAA
TCAGTCGAACATACACTTCAGATGAACTTGCACCTCTTGCTATACGATTA
GATATCTATGGCATCATTGCGCATGCATTAGCACCTGCTTCCCCTGTATT
ATTTGGAGGGGTTAATTTCAAGTTGTTCGGCCTCTCTTTCAACCAGtata
attttgttgctgttgtcCTAATTTTCGCAACCTCCTTGTACTTGATCATG
GCTAGTTTTCTGTTATGTGACTTAACTAAAGAAGAAGGGTATGAGATATT
CATTAAAACAACCAACATGAAAAGTGTAAACAACTCAACAGGGACAGATA
GGATGCTTAGCTCATGGGAAATGCTAACAAACCCAGACATCGTGCTAGTC
TTGGTTACAATTTTGATCATTGATTTCATTTACACTCAAGGTGATTTAGT
GGTGAACATGATTGCGGTGAACGTCTTTCATTGGTCCATCGAACGACTGA
GTGTTTTCCCTGTTATCACCGTCTTCATTGCAGTTGTCATCATGACGGGA
ATACAACGTCTGAATACCGGTGTCGACATTTACTTTCTTATCATAGTCAG
CGCTATTGGGAATAGCATAAGTTTAAATCTTCTTACCATTCTGGCGAACT
GTGATATCGAAAGCTTTATTCTAAGATCCATAATGCTGCTCATAACATTA
ACTTTAAATCTTGTAGTTGGGTATGGCATAACAGCCTTTACAACAGTACT
TCTTTCTATGGTTGTTCCAGCGCATTCAATGTGCTCTGTCATTGGACTCA
GAATGGTAGCTATCAAAATTGCCTTGTGTTTAGGATATTTTACAGCTTCA
ACTCTATTCGGAGTCAGCGAAGTTATTTATCCACTGATATCTGTTCTTTG
CTTGGCACTAGCATTGACATACTTGGCTAGAAGATCAGTTTTCCTTCGCA
AATACTATCATCAATAATTACTATATACAATATGCATCTTGACCAATTTC
GTCTtttctttgtgatttttttcattttta
Run BLAST on NCBI

protein sequence of TCONS_00059131-protein

>TCONS_00059131-protein ID=TCONS_00059131-protein|Name=TCONS_00059131-protein|organism=Clytia hemisphaerica|type=polypeptide|length=454bp
DQIFNIKIEIVREEVEMTLEEGKLLRSWYRKRKYNLSVFIVMKCLYAFEG
SAISISALYYFQNVLKVRDPKLYYSLATGALALSSMFSSAIVGRHVDRHR
NLRQTSLVFGLFNIAGNLLYVLPFMNWLPIFGRFLCGIADGVRPAYVGEI
SRTYTSDELAPLAIRLDIYGIIAHALAPASPVLFGGVNFKLFGLSFNQYN
FVAVVLIFATSLYLIMASFLLCDLTKEEGYEIFIKTTNMKSVNNSTGTDR
MLSSWEMLTNPDIVLVLVTILIIDFIYTQGDLVVNMIAVNVFHWSIERLS
VFPVITVFIAVVIMTGIQRLNTGVDIYFLIIVSAIGNSISLNLLTILANC
DIESFILRSIMLLITLTLNLVVGYGITAFTTVLLSMVVPAHSMCSVIGLR
MVAIKIALCLGYFTASTLFGVSEVIYPLISVLCLALALTYLARRSVFLRK
YYHQ
Run BLAST on NCBI

transcript from alignment at scaffold_318:16831..18451-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059131 ID=TCONS_00059131|Name=TCONS_00059131|organism=Clytia hemisphaerica|type=transcript|length=1621bp|location=Sequence derived from alignment at scaffold_318:16831..18451- (Clytia hemisphaerica)
AAGATCAAATTTTTAATATCAAGATTGAAATTGTCAGAGAAGAAGTTGAA
ATGACACTAGAAGAAGGGAAGTTATTGCGATCATGGTACCGAAAGCGGAA
GTACAATCTATCGGTCTTTATCGTGATGAAGTGTTTGTATGCTTTTGAGG
GATCGGCCATCTCTATATCAGCTCTCTACTATTTTCAAAACGTTTTGAAA
GTTAGGGATCCAAAGCTGTACTATTCATTGGCAACCGGAGCGCTCGCTTT
ATCCTCCATGTTTTCATCAGCTATAGTTGGCCGACACGTCGATCGTCATC
GAAACTTAAGACAAACATCTCTTGTTTTCGGATTGTTCAATATAGCAGGC
AACTTATTATACGTGTTACCATTCATGAATTGGCTACCTATCTTCGGAAG
ATTTTTATGTGGGATTGCTGATGGTGTAAGACCAGCATATGTAGGTATGT
CTTTCACAAATCGCTTATTGAACGATTAAACTGGGGTTTACAGGGACGTC
CCGCTCCACCGCTGGGGTCCGAATATTAACTTTCAATATTTGGAAGACTT
TAGAGGATCCTTACCTGTTTTGTCTAAACTACGATTAATATCAAAGTCGT
TGTTTTACAGCACTTTTTTTTACCTTCCCTTTCAGGTGAAATCAGTCGAA
CATACACTTCAGATGAACTTGCACCTCTTGCTATACGATTAGATATCTAT
GGCATCATTGCGCATGCATTAGCACCTGCTTCCCCTGTATTATTTGGAGG
GGTTAATTTCAAGTTGTTCGGCCTCTCTTTCAACCAGTATAATTTTGTTG
CTGTTGTCCTAATTTTCGCAACCTCCTTGTACTTGATCATGGCTAGTTTT
CTGTTATGTGACTTAACTAAAGAAGAAGGGTATGAGATATTCATTAAAAC
AACCAACATGAAAAGTGTAAACAACTCAACAGGGACAGATAGGATGCTTA
GCTCATGGGAAATGCTAACAAACCCAGACATCGTGCTAGTCTTGGTTACA
ATTTTGATCATTGATTTCATTTACACTCAAGGTGATTTAGTGGTGAACAT
GATTGCGGTGAACGTCTTTCATTGGTCCATCGAACGACTGAGTGTTTTCC
CTGTTATCACCGTCTTCATTGCAGTTGTCATCATGACGGGAATACAACGT
CTGAATACCGGTGTCGACATTTACTTTCTTATCATAGTCAGCGCTATTGG
GAATAGCATAAGTTTAAATCTTCTTACCATTCTGGCGAACTGTGATATCG
AAAGCTTTATTCTAAGATCCATAATGCTGCTCATAACATTAACTTTAAAT
CTTGTAGTTGGGTATGGCATAACAGCCTTTACAACAGTACTTCTTTCTAT
GGTTGTTCCAGCGCATTCAATGTGCTCTGTCATTGGACTCAGAATGGTAG
CTATCAAAATTGCCTTGTGTTTAGGATATTTTACAGCTTCAACTCTATTC
GGAGTCAGCGAAGTTATTTATCCACTGATATCTGTTCTTTGCTTGGCACT
AGCATTGACATACTTGGCTAGAAGATCAGTTTTCCTTCGCAAATACTATC
ATCAATAATTACTATATACAATATGCATCTTGACCAATTTCGTCTTTTCT
TTGTGATTTTTTTCATTTTTA

Coding sequence (CDS) from alignment at scaffold_318:16831..18451-

>TCONS_00059131 ID=TCONS_00059131|Name=TCONS_00059131|organism=Clytia hemisphaerica|type=CDS|length=2730bp|location=Sequence derived from alignment at scaffold_318:16831..18451- (Clytia hemisphaerica)
GTGAAATCAGTCGAACATACACTTCAGATGAACTTGCACCTCTTGCTATA
CGATTAGATATCTATGGCATCATTGCGCATGCATTAGCACCTGCTTCCCC
TGTATTATTTGGAGGGGTTAATTTCAAGTTGTTCGGCCTCTCTTTCAACC
AGTATAATTTTGTTGCTGTTGTCCTAATTTTCGCAACCTCCTTGTACTTG
ATCATGGCTAGTTTTCTGTTATGTGACTTAACTAAAGAAGAAGGGTATGA
GATATTCATTAAAACAACCAACATGAAAAGTGTAAACAACTCAACAGGGA
CAGATAGGATGCTTAGCTCATGGGAAATGCTAACAAACCCAGACATCGTG
CTAGTCTTGGTTACAATTTTGATCATTGATTTCATTTACACTCAAGGTGA
TTTAGTGGTGAACATGATTGCGGTGAACGTCTTTCATTGGTCCATCGAAC
GACTGAGTGTTTTCCCTGTTATCACCGTCTTCATTGCAGTTGTCATCATG
ACGGGAATACAACGTCTGAATACCGGTGTCGACATTTACTTTCTTATCAT
AGTCAGCGCTATTGGGAATAGCATAAGTTTAAATCTTCTTACCATTCTGG
CGAACTGTGATATCGAAAGCTTTATTCTAAGATCCATAATGCTGCTCATA
ACATTAACTTTAAATCTTGTAGTTGGGTATGGCATAACAGCCTTTACAAC
AGTACTTCTTTCTATGGTTGTTCCAGCGCATTCAATGTGCTCTGTCATTG
GACTCAGAATGGTAGCTATCAAAATTGCCTTGTGTTTAGGATATTTTACA
GCTTCAACTCTATTCGGAGTCAGCGAAGTTATTTATCCACTGATATCTGT
TCTTTGCTTGGCACTAGCATTGACATACTTGGCTAGAAGATCAGTTTTCC
TTCGCAAATACTATCATCAATAAGATCAAATTTTTAATATCAAGATTGAA
ATTGTCAGAGAAGAAGTTGAAATGACACTAGAAGAAGGGAAGTTATTGCG
ATCATGGTACCGAAAGCGGAAGTACAATCTATCGGTCTTTATCGTGATGA
AGTGTTTGTATGCTTTTGAGGGATCGGCCATCTCTATATCAGCTCTCTAC
TATTTTCAAAACGTTTTGAAAGTTAGGGATCCAAAGCTGTACTATTCATT
GGCAACCGGAGCGCTCGCTTTATCCTCCATGTTTTCATCAGCTATAGTTG
GCCGACACGTCGATCGTCATCGAAACTTAAGACAAACATCTCTTGTTTTC
GGATTGTTCAATATAGCAGGCAACTTATTATACGTGTTACCATTCATGAA
TTGGCTACCTATCTTCGGAAGATTTTTATGTGGGATTGCTGATGGTGTAA
GACCAGCATATGTAGGTGAAATCAGTCGAACATACACTTCAGATGAACTT
GCACCTCTTGCTATACGATTAGATATCTATGGCATCATTGCGCATGCATT
AGCACCTGCTTCCCCTGTATTATTTGGAGGGGTTAATTTCAAGTTGTTCG
GCCTCTCTTTCAACCAGTATAATTTTGTTGCTGTTGTCCTAATTTTCGCA
ACCTCCTTGTACTTGATCATGGCTAGTTTTCTGTTATGTGACTTAACTAA
AGAAGAAGGGTATGAGATATTCATTAAAACAACCAACATGAAAAGTGTAA
ACAACTCAACAGGGACAGATAGGATGCTTAGCTCATGGGAAATGCTAACA
AACCCAGACATCGTGCTAGTCTTGGTTACAATTTTGATCATTGATTTCAT
TTACACTCAAGGTGATTTAGTGGTGAACATGATTGCGGTGAACGTCTTTC
ATTGGTCCATCGAACGACTGAGTGTTTTCCCTGTTATCACCGTCTTCATT
GCAGTTGTCATCATGACGGGAATACAACGTCTGAATACCGGTGTCGACAT
TTACTTTCTTATCATAGTCAGCGCTATTGGGAATAGCATAAGTTTAAATC
TTCTTACCATTCTGGCGAACTGTGATATCGAAAGCTTTATTCTAAGATCC
ATAATGCTGCTCATAACATTAACTTTAAATCTTGTAGTTGGGTATGGCAT
AACAGCCTTTACAACAGTACTTCTTTCTATGGTTGTTCCAGCGCATTCAA
TGTGCTCTGTCATTGGACTCAGAATGGTAGCTATCAAAATTGCCTTGTGT
TTAGGATATTTTACAGCTTCAACTCTATTCGGAGTCAGCGAAGTTATTTA
TCCACTGATATCTGTTCTTTGCTTGGCACTAGCATTGACATACTTGGCTA
GAAGATCAGTTTTCCTTCGCAAATACTATCATCAATAAGATCAAATTTTT
AATATCAAGATTGAAATTGTCAGAGAAGAAGTTGAAATGACACTAGAAGA
AGGGAAGTTATTGCGATCATGGTACCGAAAGCGGAAGTACAATCTATCGG
TCTTTATCGTGATGAAGTGTTTGTATGCTTTTGAGGGATCGGCCATCTCT
ATATCAGCTCTCTACTATTTTCAAAACGTTTTGAAAGTTAGGGATCCAAA
GCTGTACTATTCATTGGCAACCGGAGCGCTCGCTTTATCCTCCATGTTTT
CATCAGCTATAGTTGGCCGACACGTCGATCGTCATCGAAACTTAAGACAA
ACATCTCTTGTTTTCGGATTGTTCAATATAGCAGGCAACTTATTATACGT
GTTACCATTCATGAATTGGCTACCTATCTTCGGAAGATTTTTATGTGGGA
TTGCTGATGGTGTAAGACCAGCATATGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037242XLOC_037242Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059131-proteinTCONS_00059131-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059131-exon-scaffold_318-1575043694:18008..18451TCONS_00059131-exon-scaffold_318-1575043694:18008..18451Clytia hemisphaericaexon
TCONS_00059131-exon-scaffold_318-1575043694:16831..17816TCONS_00059131-exon-scaffold_318-1575043694:16831..17816Clytia hemisphaericaexon
TCONS_00059131-exon-scaffold_318-1510915933:18008..18451TCONS_00059131-exon-scaffold_318-1510915933:18008..18451Clytia hemisphaericaexon
TCONS_00059131-exon-scaffold_318-1510915933:16831..17816TCONS_00059131-exon-scaffold_318-1510915933:16831..17816Clytia hemisphaericaexon
TCONS_00059131-exon-scaffold_318-1491911889:18008..18451TCONS_00059131-exon-scaffold_318-1491911889:18008..18451Clytia hemisphaericaexon
TCONS_00059131-exon-scaffold_318-1491911889:16831..17816TCONS_00059131-exon-scaffold_318-1491911889:16831..17816Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_318supercontigscaffold_318:16831..18451 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.83376	5.99371	1.85504	1.53415	9.5112e-05	5.0318e-05	6.85828e-05	5.13431e-05	2.67969e-06	2.24404e-05	2.4501e-05	2.60898e-05	9.27233e-06	3.1686e-06	5.97816e-06	1.15595e-05	1.26684	0	3.57934e-05	3.33881e-05	2.58638	2.58456	6.37973	4.83933	3.60907e-05	3.38183e-05	1.3695e-05	6.06457e-05	2.55405	3.91122
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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