TCONS_00059130 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059130
Unique NameTCONS_00059130
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059130 ID=TCONS_00059130|Name=TCONS_00059130|organism=Clytia hemisphaerica|type=transcript|length=1421bp
CAAATTTTTAATATCAAGATTGAAATTGTCAGAGAAGAAGTTGAAATGAC
ACTAGAAGAAGGGAAGTTATTGCGATCATGGTACCGAAAGCGGAAGTACA
ATCTATCGGTCTTTATCGTGATGAAGTGTTTGTATGCTTTTGAGGGATCG
GCCATCTCTATATCAGCTCTCTACTattttcaaaacgttttgaaaGTTAG
GGATCCAAAGCTGTACTATTCATTGGCAACCGGAGCGCTCGCTTTATCCT
CCATGTTTTCATCAGCTATAGTTGGCCGACACGTCGATCGTCATCGAAAC
TTAAGACAAACATCTCTTGTTTTCGGATTGTTCAATATAGCAGGCAACTT
ATTATACGTGTTACCATTCATGAATTGGCTACCTATCTTCGGAAGATTTT
TATGTGGGATTGCTGATGGTGTAAGACCAGCATATGTGAAATCAGTCGAA
CATACACTTCAGATGAACTTGCACCTCTTGCTATACGATTAGATATCTAT
GGCATCATTGCGCATGCATTAGCACCTGCTTCCCCTGTATTATTTGGAGG
GGTTAATTTCAAGTTGTTCGGCCTCTCTTTCAACCAGtataattttgttg
ctgttgtcCTAATTTTCGCAACCTCCTTGTACTTGATCATGGCTAGTTTT
CTGTTATGTGACTTAACTAAAGAAGAAGGGTATGAGATATTCATTAAAAC
AACCAACATGAAAAGTGTAAACAACTCAACAGGGACAGATAGGATGCTTA
GCTCATGGGAAATGCTAACAAACCCAGACATCGTGCTAGTCTTGGTTACA
ATTTTGATCATTGATTTCATTTACACTCAAGGTGATTTAGTGGTGAACAT
GATTGCGGTGAACGTCTTTCATTGGTCCATCGAACGACTGAGTGTTTTCC
CTGTTATCACCGTCTTCATTGCAGTTGTCATCATGACGGGAATACAACGT
CTGAATACCGGTGTCGACATTTACTTTCTTATCATAGTCAGCGCTATTGG
GAATAGCATAAGTTTAAATCTTCTTACCATTCTGGCGAACTGTGATATCG
AAAGCTTTATTCTAAGATCCATAATGCTGCTCATAACATTAACTTTAAAT
CTTGTAGTTGGGTATGGCATAACAGCCTTTACAACAGTACTTCTTTCTAT
GGTTGTTCCAGCGCATTCAATGTGCTCTGTCATTGGACTCAGAATGGTAG
CTATCAAAATTGCCTTGTGTTTAGGATATTTTACAGCTTCAACTCTATTC
GGAGTCAGCGAAGTTATTTATCCACTGATATCTGTTCTTTGCTTGGCACT
AGCATTGACATACTTGGCTAGAAGATCAGTTTTCCTTCGCAAATACTATC
ATCAATAATTACTATATACAATATGCATCTTGACCAATTTCGTCTtttct
ttgtgatttttttcattttta
Run BLAST on NCBI

transcript from alignment at scaffold_318:16831..18446-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059130 ID=TCONS_00059130|Name=TCONS_00059130|organism=Clytia hemisphaerica|type=transcript|length=1616bp|location=Sequence derived from alignment at scaffold_318:16831..18446- (Clytia hemisphaerica)
CAAATTTTTAATATCAAGATTGAAATTGTCAGAGAAGAAGTTGAAATGAC
ACTAGAAGAAGGGAAGTTATTGCGATCATGGTACCGAAAGCGGAAGTACA
ATCTATCGGTCTTTATCGTGATGAAGTGTTTGTATGCTTTTGAGGGATCG
GCCATCTCTATATCAGCTCTCTACTATTTTCAAAACGTTTTGAAAGTTAG
GGATCCAAAGCTGTACTATTCATTGGCAACCGGAGCGCTCGCTTTATCCT
CCATGTTTTCATCAGCTATAGTTGGCCGACACGTCGATCGTCATCGAAAC
TTAAGACAAACATCTCTTGTTTTCGGATTGTTCAATATAGCAGGCAACTT
ATTATACGTGTTACCATTCATGAATTGGCTACCTATCTTCGGAAGATTTT
TATGTGGGATTGCTGATGGTGTAAGACCAGCATATGTAGGTATGTCTTTC
ACAAATCGCTTATTGAACGATTAAACTGGGGTTTACAGGGACGTCCCGCT
CCACCGCTGGGGTCCGAATATTAACTTTCAATATTTGGAAGACTTTAGAG
GATCCTTACCTGTTTTGTCTAAACTACGATTAATATCAAAGTCGTTGTTT
TACAGCACTTTTTTTTACCTTCCCTTTCAGGTGAAATCAGTCGAACATAC
ACTTCAGATGAACTTGCACCTCTTGCTATACGATTAGATATCTATGGCAT
CATTGCGCATGCATTAGCACCTGCTTCCCCTGTATTATTTGGAGGGGTTA
ATTTCAAGTTGTTCGGCCTCTCTTTCAACCAGTATAATTTTGTTGCTGTT
GTCCTAATTTTCGCAACCTCCTTGTACTTGATCATGGCTAGTTTTCTGTT
ATGTGACTTAACTAAAGAAGAAGGGTATGAGATATTCATTAAAACAACCA
ACATGAAAAGTGTAAACAACTCAACAGGGACAGATAGGATGCTTAGCTCA
TGGGAAATGCTAACAAACCCAGACATCGTGCTAGTCTTGGTTACAATTTT
GATCATTGATTTCATTTACACTCAAGGTGATTTAGTGGTGAACATGATTG
CGGTGAACGTCTTTCATTGGTCCATCGAACGACTGAGTGTTTTCCCTGTT
ATCACCGTCTTCATTGCAGTTGTCATCATGACGGGAATACAACGTCTGAA
TACCGGTGTCGACATTTACTTTCTTATCATAGTCAGCGCTATTGGGAATA
GCATAAGTTTAAATCTTCTTACCATTCTGGCGAACTGTGATATCGAAAGC
TTTATTCTAAGATCCATAATGCTGCTCATAACATTAACTTTAAATCTTGT
AGTTGGGTATGGCATAACAGCCTTTACAACAGTACTTCTTTCTATGGTTG
TTCCAGCGCATTCAATGTGCTCTGTCATTGGACTCAGAATGGTAGCTATC
AAAATTGCCTTGTGTTTAGGATATTTTACAGCTTCAACTCTATTCGGAGT
CAGCGAAGTTATTTATCCACTGATATCTGTTCTTTGCTTGGCACTAGCAT
TGACATACTTGGCTAGAAGATCAGTTTTCCTTCGCAAATACTATCATCAA
TAATTACTATATACAATATGCATCTTGACCAATTTCGTCTTTTCTTTGTG
ATTTTTTTCATTTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037242XLOC_037242Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059130-exon-scaffold_318-1575043694:18012..18446TCONS_00059130-exon-scaffold_318-1575043694:18012..18446Clytia hemisphaericaexon
TCONS_00059130-exon-scaffold_318-1575043694:16831..17816TCONS_00059130-exon-scaffold_318-1575043694:16831..17816Clytia hemisphaericaexon
TCONS_00059130-exon-scaffold_318-1510915933:18012..18446TCONS_00059130-exon-scaffold_318-1510915933:18012..18446Clytia hemisphaericaexon
TCONS_00059130-exon-scaffold_318-1510915933:16831..17816TCONS_00059130-exon-scaffold_318-1510915933:16831..17816Clytia hemisphaericaexon
TCONS_00059130-exon-scaffold_318-1491911889:18012..18446TCONS_00059130-exon-scaffold_318-1491911889:18012..18446Clytia hemisphaericaexon
TCONS_00059130-exon-scaffold_318-1491911889:16831..17816TCONS_00059130-exon-scaffold_318-1491911889:16831..17816Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_318supercontigscaffold_318:16831..18446 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	4.09247e-07	2.23151e-08	0.677135	0.610242	0.440223	0.992391	0.164256	0.135763	0.153816	0.293845	0.244533	0.425486	0.23163	0.438053	0	1.57006	0.325292	0.679647	0	0	0	0	0.567063	0.527442	0.348054	0.8465	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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