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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059128 ID=TCONS_00059128|Name=TCONS_00059128|organism=Clytia hemisphaerica|type=transcript|length=790bp
aaaaatttaaagGGTTGTTTTTCTCCATCGTAGATCTCCCATTAAAATAG
AAGCCGGAGCAAAATTTCTGAAACCAAGATGGCGGACTCAGATAGCGATG
GAAGAAGTTCTGACCTCGAAGATTCTATGCAAGATGAAGGCTCTTCATCG
CAGAAAAATCCCTATTCTCCTAGATATGTTAATATCAAAAAGGGTCCAAG
GGGTTTTGGTTTCAATGTGAGAGGTCAAGTTGCTGAGGGAGGGCAGTTAC
GCTCTATAAATGGAGTGCTTTATCCACCTCTTCAAATGATTAGTGCAGTT
TTGGAAAAAGGTCCTGCTGATGTGGCTGGTGTGCGTGTTGGTGATCGGAT
CCTAATGGTGAATGATCAAAATTGTGAAGGAGCAGACCATCGCACAGTTG
TTGATCTCATACGACAAGGTGAAAATGAATTATCAATGGCAATCATTTCA
GTTACTCCAAGTGAAGCTCGTAAATTGGACGGTCCTACAAATATGTTTGG
TGCATCTGACTACATAGATTACAGTGATCGTAGAAGTATTCCAATTTCAA
TTCCTGACTATAAACATGAAGAAAAGGGATCTGATAAGTTTGTGgtttat
AACATATACATATCTGGCAACTTGGTGACCTCAAAACGTTATAATGAATT
TCACAGTCTAAACAATGAGTTAAAAAGACAGTTTCACGACTTtccatttc
caaaatttcctgGTAAATGGCCTTTGAAACTTTCTGAAGTACAGTTGGAT
GCTCGTAGAAGACACTTAGAGACGTATCTTGAAGAAGGTA Run BLAST on NCBI protein sequence of TCONS_00059128-protein >TCONS_00059128-protein ID=TCONS_00059128-protein|Name=TCONS_00059128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
MADSDSDGRSSDLEDSMQDEGSSSQKNPYSPRYVNIKKGPRGFGFNVRGQ
VAEGGQLRSINGVLYPPLQMISAVLEKGPADVAGVRVGDRILMVNDQNCE
GADHRTVVDLIRQGENELSMAIISVTPSEARKLDGPTNMFGASDYIDYSD
RRSIPISIPDYKHEEKGSDKFVVYNIYISGNLVTSKRYNEFHSLNNELKR
QFHDFPFPKFPGKWPLKLSEVQLDARRRHLETYLEEG Run BLAST on NCBI transcript from alignment at scaffold_318:269908..279145+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059128 ID=TCONS_00059128|Name=TCONS_00059128|organism=Clytia hemisphaerica|type=transcript|length=9238bp|location=Sequence derived from alignment at scaffold_318:269908..279145+ (Clytia hemisphaerica)
aaaaatttaaagGGTTGTTTTTCTCCATCGTAGATCTCCCATTAAAATAG
AAGCCGGAGCAAAATTTCTGAAACCAAGATGGCGGACTCAGATAGCGATG
GAAGAAGTTCTGACCTCGAAGATTCTATGCAAGATGAAGGCTCTTCATCG
CAGAAAAATCCCTATTCTCCTAGATATGTTAATATCAAAAAGGGTCCAAG
GGGTTTTGGTTTCAATGTGAGAGGTCAAGTTGCTGAGGGAGGGCAGTTAC
GCTCTATAAATGGAGTGCTTTATCCACCTCTTCAAATGATTAGTGCAGTT
TTGGAAAAAGGTCCTGCTGATGTGGCTGGTGTGCGTGTTGGTGATCGGAT
CCTAATGGTGTAAGAACAATTATTACTTCTATCATTAGTTTTTATTTATA
GAATTTAGGTTTTTTCAGCAGGAATAGTCTTTTAAAGGTTGCACTACTTG
TATATACTATGCTATTTTGATAGATCTCTTTTCTTTTATTCACCTTTCCA
CaggttgggtgtttaagataaaaacagcAATTATTTCTCTTTTGACAACT
ATTGCCGAAAACAGCAATTCTTTCAACAATAACaccagttaggaacattt
ggcgagttcctgtacgcaaccgcgatctaaaaaatcataaaagcaCTCAT
CTGCACTCATTAAATAATGACGTttgtgtcttttcgcactttttttagcc
tagacgatgtagcaaacatagtaaatataagcacactgtgcttttaattg
gctgaaatttctttttgcgtcgaaaaaactttttcaaactttcagctatg
attgaccaaactgttacaatgaaaattatccagcgcattttttatcttct
tatcttcttaatcttcaatgaagaactcaaagtttactgaatttaagcac
ataagatattcttataattattgatattcactgaaacaccgtTCGTTGTG
TGCTGCGGTgtggagtgtatgacgtaactcgcgcggtaaataacagttac
atcaatatgccaaaaacattttgttcaaccaccttcacttcNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNagatattttactaactagcccagagaaaaaatttaaacctttat
tatttgaatgcatgcctttttaatactcaaatataaaaaaattaaaaaat
tttaacttgcttattagtcaaaaaagtcattaaaattgattagcctctgc
gatggagtgcaagggctgaaagccacatgaatatggttcatcctataaaa
ggaagttcattctatggtggcctatcttgaagtgaaggtggttgaacaaa
atgtNggaaaatagtaagaaacttaagtttacaagtgtcatttagttttt
tctggcttatagaatggcaggatcctggatggtttccctaactgaacaCG
CTGAAtcagtaccgtcaactgctctatcttgggacaattggtcgaAACAA
CATGGgagggactgttgatatctggcctgtacagtattttcacttattgt
taaatctctttgacaacaaatttgttttcataactctaccaagtttatca
atcatactttctgtcataacatgtcacgataacttttactgatagtgcgc
cctttttaacttttttgttttcattcaaaacgaccggacgccgattggag
aattagagaaaaTCGGAAAACTGGGCTGAAATTTCAGATTTCACTTGGAA
AATTTTGTCTCACGCAAAATGAACATCTTGAGTTAGCAGGTCTGTAAAAG
GTAGATCAGGAGGtttaaagattttgatgaaaGTTTGTACTATCTCCATG
TAACTTTCTAAAAACCAAGATtccatagacctttttgcctttccatctgc
catcttgaattgtatgcaaaaatagaggaacgaaaaagccgtggttggat
ttagttggaaagtatgcaaaacatatNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNtaaaaagacaacaaagcatcttataaataa
atattataatcattagaacaataaaagatggaatttctcaatccaaaaag
aaatattcacagaacaacaataagccttttagaaatttgttcttaaagac
atagcatattctgttttcatgctattaagaaattccactaagacggagta
cacatcaaactttcaaaacacacaaactgaaaagcagtaattatgacgtc
acacattatcaatgttttgatttgatcatttggcggctctattcccagga
gaataatttaccgtcagccgaataagggttattttttaccttcgctgatg
atttttcagtttgaatttatgtctaatgttattgatttttgaagtgcttg
ttctaagagatgaacgaatataattatttttagttttcaagagaagcaaa
tttaatctttcttctacaagattacactttaatataatgccaattatgca
tgtaagttttatattaatacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNtgcatactttctaagggaatttcaccacggcaa
ttcggccaccataatttttgcatacaattcaatatggcggatggaaaggc
gaaaaggtctattgtcttATAGGACTCATTTTGTGTTTAATCTTGtgcaa
aaattgttgttttgagcatcattgtcaagatttttaggaattttagaGTT
AAGAAGGATTTTGAGCTAGGCCTAATTTTTAAAGGAGTGGAAAAGGTGTC
AAATTTCTGATAAATTATAATTGCACTATCTATAGGAAAAGtacaaaatc
aagaatcaagtaTCAATGGATGCTcattttcgacaaaaatttcagccaaa
aatgtactttaataagtcaattttacaaaattatggGGTCAGGGGAGTTA
GAAGCCACCTTTGAGTGAAATTTCAGCCTCCTTAAGTCAGGGCATGAAAT
AACAGTCGGACATcagacattgtccgacccaatcGATGAATGTCCAACTA
AAATAGATTCTGATCGGACACAATATCCAACCACAGCCAACCCATGTTTT
CAGTCActtaaaaattcaaacaaattcaAACATTATTTACATAAATTTAA
ATTGGCAACCTTCTCATTTACACAGAGAAACTCTCTGCAGTTAAAATTGT
TCTCTATTCANTGAAATTAGCAACCTTCTCATTTACACAGAGAAACTCTC
TGCAGTTAAAAATGTTCTCTATTCGTTGTGTTTGAAAGCAAACAATTCAT
CCTTTTTCAAGCTTGCTTCAAGTCAAAATCATAGTGCAAAAAATGCCCTT
CACTAAAGTCTTTCTAAATTTCTACTTAGCTTgtctaatatttttaaaac
cACCAATCATCAATGTTTGGACCAAAAGAATCTTTTGCTAATTTTTGTCC
GAACTTGACAGTCAGCTTTCTTTTCGTATATATAAAATTTACAGGAAACc
tatatttggattttgaatttACAAAAACTGCAAATTGAATTAACAATTTT
GACCACCCAACTTAGAACCTGGTACTAAGTTATCTTTTACCTGCCAATTT
TAAACACACATCTGGCAGTGGTCCCTCACCATGATTAAGTAAGTTTCCTT
TATCCAAATTCTACTAATATTATTGTTGGATCCATCTATAAACACCCTCT
TTTTTCGCTTGATGAATTCAATAAACTTCTTGAACcacttttgaataaaa
tcaacaaagaaaataaacaaattcttTTGCTAGGGtgatttcaacattaa
tcttttgaatatttcttCTGATCCCAATATCTTTTCTTACTTGAACAACC
TTGGATCACACTTTCTTATACCTAATATTTTTCTTCCGACTCGAATTACT
GACCACTCCATGACACttattgacaatattttttcttcaatttctgaaAA
GCGTACCTTTTCAGGAAATTTGCTTTATTCTATCTCTGATCATCTTCCTC
AATTTCATATGTGGTCCCTCTGTTAAaccaaagaatgaaaaaatcttCCG
AAAGGACTGGAAAAACTTTAAAcaacaagattttatttttggttttcTTA
ATATTGATTGGGTAAATAAATTATATCATATAACAGATGTTGATCAAGCT
TTCAAAACCTTTTATGATCTTATCCTAGACCTTATTGATCAACATGTCCC
GACTGTTGTTGTGACCAAACGCCAACAAAAAACTCGGGCTAAACCATGGA
TCACCCCCCCGGAATTATTAAATCAATCTCACAACGTCAATTTTATTcta
gaaaatatattcaaaccaATGGCCCTATTATGAAATCTTTTTACtatcaa
agaaataaaacatCAATCTCATAGTTACTCTTACACGTAAGAGTAAGAAT
AATTATTATTCCAATTTTTTCTCTGTTCATGCTACAAATATTCTGAAAGT
CTGGGAAGGGATCAGAGATATCATAGGATCTGATTCCAAATCTTCTCCTT
CATCTATTCGTGTCAATGGTCATCTCAGCTCTGATCCAAACGTTGTTGCC
AATGGCTTCAATGACTTTTTTACTTCTATTGCAGATACTGTCCGTTTCAA
AATTGGTCCAACCAATCGTCACTTCTCTCACTATCTTAAAAATCGCGNTG
GTCATCTCAGCTCTGATCCAAACGTTGTTGCCAATGGCTTCAATGACTTT
TTTACTTCTATTGCAGATACTGTCCGTTTCAAAATTGGTCCAACAAATCG
TCACTTCTCTCGCTATCTCAAAAATCGCATTAGGAACTCTATTTTTCTTG
ATCGTGTTAACCCTGCTGAAGTTTTACTAACAATTAATTCTTTATACTTT
AACAAATCATCTGGCCCTTATAGCATTCCCCCAAAAATTCTTCGTCTTCT
AAAGTTTGACCTCTCTGGAcccctttcttttctttttaacctttcattTG
AATCTGGTTGTTTCCCCACAATGCTTAAACTCTCGAAAGTTATTcccgtt
ttcaaaaacaaaggctcCCCACTTGAAATATCCAATTATCGCCCTATATC
TCTTCTTTCCAACATAGAGAAAATTCTTGAGAAACTTATGTACTCTCGTC
TTATTACTTTCTTAGATTCTCATCGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNatggtaaataaataaatacttacttacttgcAACCAACTGCAGAC
TATTGTTCCCTTGACAAGCTTGATAGAAATGTTAAATTCTCTGTAGACTA
TTTTAAGATGGAATGCACTTGAATTTTCTCAAGATAGACTATCCATAACT
AATCTaacatatttttttgattttgaaatccaGAATAGACAATTAACTTG
ATATTCAGAGTTTCTTGTGTGCTTTTCTGCAAAATGATCAGCTGGCAATA
ATTTTTATACTTTAAAATTCTTTATAGGAATGATCAAAATTGTGAAGGAG
CAGACCATCGCACAGTTGTTGATCTCATACGACAAGGTGAAAATGAATTA
TCAATGGCAATCATTTCAGTTACTCCAAGTGAAGCTCGTAAATTGGACGG
TCCTACAAATATGTTTGGTGCATCTGACTACATAGATTACAGTGATCGTA
GAAGTATTCCAATTTCAATTCCTGACTATAAACATGAAGAAAAGGGATCT
GATAAGTTTGTGGTAAGCTCTATTCATTTGATAGGCNTGGTGCATCTGAC
TACATAGATTACAGTGATCGTAGAAGTATTCCAATTTCAATTCCTGACTA
TAAACATGAAGAAAAGGGATCTGATAAGTTTGTGGTAAGCTCTATTCTTT
TGATAGGCTTATTTTACTTATTTGCCAGATCGGAACTCAGGATTCTTAAG
CTTTAAGAAATAGACTGATGCAATAAAGGTTCCTATTTGAAGAAacaaac
tttctttaaaaagagtgataatttttttggattgGCTGGTTTTGAGGTAG
GCTCGGTCAAATGATGGCAAACCAATGAAGTCCAGCCTTATCACATAGCT
GGGCATTAATGTTGTATTTTTAAAGTATCTTTTGTAAATTGGGATTTAGG
AATGTATCTTGTATCTTGTTCATCACTAATatgagtttgaattttttttt
ttcaggtttatAACATATACATATCTGGCAACTTGGTGACCTCAAAACGT
TATAATGAATTTCACAGTCTAAACAATGAGGTGAATTAATTTGTGAAAAG
AGTAAGATTAAAGAGTAACATACTTTAGGCGGCCAACTtctcgccctgcc
tattctaattgggAGTCAGCAGAGaattggctgtctaaagtcgccctctt
ttgacgtcaatgccatgtcttctttcaacctttttaAAGTAACGATTTTA
ACTGCCAAATAGAGCTTCGATacctaatcgcacgatgggttattttttct
tatttggcacgccctcaaagagagcaattaatcgttaattgcatcctgta
gagagcaattaatcgttaatcacactcttcaatgatgcgccaatgtttac
aaaaattattttaatgttttttcttacatctttttttgcatcgaacgttt
ttaattgcattcgaaattcattttgtgagaaagaaaatcaataaacaaca
ataaaagaaagacacagagagaagagaaaaatataaaactctcagtgtat
ttctgtaatttactttcctaaactgggaaaaagtagtggaaaccattgtg
cgattagcttgtaatcacataataacacgtgcaattcgaatataattgca
ctcgtgatttctttgtttcgaattttcctcgttctttcggactcggaaaa
ttaataacaaaaaaaatcactcgtgcaattatattcgaattgcactcgtt
atcatgtgattacatatacaaatcagttttcaatcttttttaccaatgca
gtttttggacctacctggaggtcttttaatttgaccgttgtccgttcgtc
tgttacaagcttttctcaggatcggctcgttagttttttttaattttttg
cactcTGGTGCAAAGTGGTGATTCCCAAAAtttgacggagcccgattttc
gaaaaaaaaaatttttgggcaaattggtccaaaaagtgcctaaaaatggg
gtttttggactttgtgtgaaattgcttcattagttttttctgattttttg
cacactggtgtaaaatggtaatgcccaaaattttgcggagcccgattttc
gaaaaaaaaaatttttgggcaaattggtccaaaaagtgcctaaaaatggg
ggttttggactttgtgtgaaattgcttcattagttttttctgcttttttg
gacaaagatgaagggcaaggttctctaaaacgtgactgaagtagtttttt
tcagaaaattttttttggccgtaaaaatcagattttcttatttggggaaa
ttcctttttgtcatatttagggaaaaagagcatttctcgcgattggattg
atatttttttctgaatttttgtatagtgatataaaatggtaatatgtAAT
GGTAATTTGGGCAGAAAAGTgcctaatgtttttttttttttacttttttg
actaatttgagccctgatactcacggtaatttATTTAagctgctcactac
actttcttattcccttgctatttgtcctatttttatctgattttgatcaa
caggtagttccattcagcatgttgcttgttttactTGAATTCTATGTTCA
ATGCTTTGTTCAACTTTGTGTTACAGTAAATTTCATAGAAGTGAAATGTA
TTTTCTCCCAATTTTAGTTAAAAAGACAGTTTCACGACTTtccatttcca
aaatttcctgGTAAATGGCCTTTGAAACTTTCTGAAGTACAGTTGGATGC
TCGTAGAAGACACTTAGAGACGTATCTTGAAGAAGGTA Coding sequence (CDS) from alignment at scaffold_318:269908..279145+ >TCONS_00059128 ID=TCONS_00059128|Name=TCONS_00059128|organism=Clytia hemisphaerica|type=CDS|length=2844bp|location=Sequence derived from alignment at scaffold_318:269908..279145+ (Clytia hemisphaerica)
ATGGCGGACTCAGATAGCGATGGAAGAAGTTCTGACCTCGAAGATTCTAT
GCAAGATGAAGGCTCTTCATCGCAGAAAAATCCCTATTCTCCTAGATATG
TTAATATCAAAAAGGGTCCAAGGGGTTTTGGTTTCAATGTGAGAGGTCAA
GTTGCTGAGGGAGGGCAGTTACGCTCTATAAATGGAGTGCTTTATCCACC
TCTTCAAATGATTAGTGCAGTTTTGGAAAAAGGTCCTGCTGATGTGGCTG
GTGTGCGTGTTGGTGATCGGATCCTAATGGTGAATGATCAAAATTGTGAA
GGAGCAGACCATCGCACAGTTGTTGATCTCATACGACAAGGTGAAAATGA
ATTATCAATGGCAATCATTTCAGTTACTCCAAGTGAAGCTCGTAAATTGG
ACGGTCCTACAAATATGTTTGGTGCATCTGACTACATAGATTACAGTGAT
CGTAGAAGTATTCCAATTTCAATTCCTGACTATAAACATGAAGAAAAGGG
ATCTGATAAGTTTGTGgtttatAACATATACATATCTGGCAACTTGGTGA
CCTCAAAACGTTATAATGAATTTCACAGTCTAAACAATGAGTTAAAAAGA
CAGTTTCACGACTTtccatttccaaaatttcctgGTAAATGGCCTTTGAA
ACTTTCTGAAGTACAGTTGGATGCTCGTAGAAGACACTTAGAGACGTATC
TTGAAGAAGGTATGGCGGACTCAGATAGCGATGGAAGAAGTTCTGACCTC
GAAGATTCTATGCAAGATGAAGGCTCTTCATCGCAGAAAAATCCCTATTC
TCCTAGATATGTTAATATCAAAAAGGGTCCAAGGGGTTTTGGTTTCAATG
TGAGAGGTCAAGTTGCTGAGGGAGGGCAGTTACGCTCTATAAATGGAGTG
CTTTATCCACCTCTTCAAATGATTAGTGCAGTTTTGGAAAAAGGTCCTGC
TGATGTGGCTGGTGTGCGTGTTGGTGATCGGATCCTAATGGTGAATGATC
AAAATTGTGAAGGAGCAGACCATCGCACAGTTGTTGATCTCATACGACAA
GGTGAAAATGAATTATCAATGGCAATCATTTCAGTTACTCCAAGTGAAGC
TCGTAAATTGGACGGTCCTACAAATATGTTTGGTGCATCTGACTACATAG
ATTACAGTGATCGTAGAAGTATTCCAATTTCAATTCCTGACTATAAACAT
GAAGAAAAGGGATCTGATAAGTTTGTGgtttatAACATATACATATCTGG
CAACTTGGTGACCTCAAAACGTTATAATGAATTTCACAGTCTAAACAATG
AGTTAAAAAGACAGTTTCACGACTTtccatttccaaaatttcctgGTAAA
TGGCCTTTGAAACTTTCTGAAGTACAGTTGGATGCTCGTAGAAGACACTT
AGAGACGTATCTTGAAGAAGGTATGGCGGACTCAGATAGCGATGGAAGAA
GTTCTGACCTCGAAGATTCTATGCAAGATGAAGGCTCTTCATCGCAGAAA
AATCCCTATTCTCCTAGATATGTTAATATCAAAAAGGGTCCAAGGGGTTT
TGGTTTCAATGTGAGAGGTCAAGTTGCTGAGGGAGGGCAGTTACGCTCTA
TAAATGGAGTGCTTTATCCACCTCTTCAAATGATTAGTGCAGTTTTGGAA
AAAGGTCCTGCTGATGTGGCTGGTGTGCGTGTTGGTGATCGGATCCTAAT
GGTGAATGATCAAAATTGTGAAGGAGCAGACCATCGCACAGTTGTTGATC
TCATACGACAAGGTGAAAATGAATTATCAATGGCAATCATTTCAGTTACT
CCAAGTGAAGCTCGTAAATTGGACGGTCCTACAAATATGTTTGGTGCATC
TGACTACATAGATTACAGTGATCGTAGAAGTATTCCAATTTCAATTCCTG
ACTATAAACATGAAGAAAAGGGATCTGATAAGTTTGTGgtttatAACATA
TACATATCTGGCAACTTGGTGACCTCAAAACGTTATAATGAATTTCACAG
TCTAAACAATGAGTTAAAAAGACAGTTTCACGACTTtccatttccaaaat
ttcctgGTAAATGGCCTTTGAAACTTTCTGAAGTACAGTTGGATGCTCGT
AGAAGACACTTAGAGACGTATCTTGAAGAAGGTATGGCGGACTCAGATAG
CGATGGAAGAAGTTCTGACCTCGAAGATTCTATGCAAGATGAAGGCTCTT
CATCGCAGAAAAATCCCTATTCTCCTAGATATGTTAATATCAAAAAGGGT
CCAAGGGGTTTTGGTTTCAATGTGAGAGGTCAAGTTGCTGAGGGAGGGCA
GTTACGCTCTATAAATGGAGTGCTTTATCCACCTCTTCAAATGATTAGTG
CAGTTTTGGAAAAAGGTCCTGCTGATGTGGCTGGTGTGCGTGTTGGTGAT
CGGATCCTAATGGTGAATGATCAAAATTGTGAAGGAGCAGACCATCGCAC
AGTTGTTGATCTCATACGACAAGGTGAAAATGAATTATCAATGGCAATCA
TTTCAGTTACTCCAAGTGAAGCTCGTAAATTGGACGGTCCTACAAATATG
TTTGGTGCATCTGACTACATAGATTACAGTGATCGTAGAAGTATTCCAAT
TTCAATTCCTGACTATAAACATGAAGAAAAGGGATCTGATAAGTTTGTGg
tttatAACATATACATATCTGGCAACTTGGTGACCTCAAAACGTTATAAT
GAATTTCACAGTCTAAACAATGAGTTAAAAAGACAGTTTCACGACTTtcc
atttccaaaatttcctgGTAAATGGCCTTTGAAACTTTCTGAAGTACAGT
TGGATGCTCGTAGAAGACACTTAGAGACGTATCTTGAAGAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059128-exon-scaffold_318-1491911889:269908..270266 | TCONS_00059128-exon-scaffold_318-1491911889:269908..270266 | Clytia hemisphaerica | exon |
| TCONS_00059128-exon-scaffold_318-1510915933:269908..270266 | TCONS_00059128-exon-scaffold_318-1510915933:269908..270266 | Clytia hemisphaerica | exon |
| TCONS_00059128-exon-scaffold_318-1575043694:269908..270266 | TCONS_00059128-exon-scaffold_318-1575043694:269908..270266 | Clytia hemisphaerica | exon |
| TCONS_00059128-exon-scaffold_318-1491911889:276685..276919 | TCONS_00059128-exon-scaffold_318-1491911889:276685..276919 | Clytia hemisphaerica | exon |
| TCONS_00059128-exon-scaffold_318-1510915933:276685..276919 | TCONS_00059128-exon-scaffold_318-1510915933:276685..276919 | Clytia hemisphaerica | exon |
| TCONS_00059128-exon-scaffold_318-1575043694:276685..276919 | TCONS_00059128-exon-scaffold_318-1575043694:276685..276919 | Clytia hemisphaerica | exon |
| TCONS_00059128-exon-scaffold_318-1491911889:277363..277437 | TCONS_00059128-exon-scaffold_318-1491911889:277363..277437 | Clytia hemisphaerica | exon |
| TCONS_00059128-exon-scaffold_318-1510915933:277363..277437 | TCONS_00059128-exon-scaffold_318-1510915933:277363..277437 | Clytia hemisphaerica | exon |
| TCONS_00059128-exon-scaffold_318-1575043694:277363..277437 | TCONS_00059128-exon-scaffold_318-1575043694:277363..277437 | Clytia hemisphaerica | exon |
| TCONS_00059128-exon-scaffold_318-1491911889:279025..279145 | TCONS_00059128-exon-scaffold_318-1491911889:279025..279145 | Clytia hemisphaerica | exon |
| TCONS_00059128-exon-scaffold_318-1510915933:279025..279145 | TCONS_00059128-exon-scaffold_318-1510915933:279025..279145 | Clytia hemisphaerica | exon |
| TCONS_00059128-exon-scaffold_318-1575043694:279025..279145 | TCONS_00059128-exon-scaffold_318-1575043694:279025..279145 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_318 | supercontig | scaffold_318:269908..279145 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
| GO:0035091 | phosphatidylinositol binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0035091 |
phosphatidylinositol binding |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00059128 vs. Swiss-Prot (Human)
Match: SNX27 (Sorting nexin-27 OS=Homo sapiens GN=SNX27 PE=1 SV=2) HSP 1 Score: 250.366 bits (638), Expect = 1.364e-78 Identity = 124/206 (60.19%), Postives = 150/206 (72.82%), Query Frame = 1
Query: 169 PRYVNIKKGPRGFGFNVRGQVAEGGQLRSINGVLYPPLQMISAVLEKGPADVAGVRVGDRILMVNDQNCEGADHRTVVDLIRQGENELSMAIISVTPSEARKLDGPTNMFGASDYIDYSDRRSIPISIPDYKHEEKGSDKFVVYNIYISGNLVTSKRYNEFHSLNNELKRQFHDFPFPKFPGKWPLKLSEVQLDARRRHLETYLEE 786
PR V I K G+GFNVRGQV+EGGQLRSING LY PLQ +SAVL G AD AGVR GDRIL VN N EGA H+ VVDLIR GE EL + ++SV P EA LD + G S Y DY++++++PIS+P YKH E+ +KFVVYN+Y++G + SKRY EF L+ LKR+F +F FP+ PGKWP LSE QLDARRR LE YLE+
Sbjct: 41 PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNHVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFY-DYTEKQAVPISVPRYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEK 245
The following BLAST results are available for this feature:
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