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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059126 ID=TCONS_00059126|Name=TCONS_00059126|organism=Clytia hemisphaerica|type=transcript|length=2137bp
AAAAATTGAGGGAGAGACTCATTGGTTAtttgattaaagtttttctGACT
CTTTAGAATATTCCAATGTTCATTTTGCTGttagatttttgaatttcgtc
aattattttttttgatttgaagattTCTTTGCGGAGCTAACGTAAACTTT
TatgtttgataattttttgaagCGCGTGTATCATGAATTTTAGTTCAGTT
GACACACGAAgttctttcaacgttcatctaacggtCATAACATCCTAAAA
TGTTAGATGGACgttaaaagaacgttgtgtATATAACTGGAAAAGTTAAT
TTATTGTACCTTAGATGAATGAAATTAATGAGAATGGCAGAAGAAACTCA
AAGAAATAgttcatcatcatcaaaaacattcgaaattcgtaAAATGGGTT
GTTCTTTTTTACGACAGTGTCGTCGGCGTACTCAAAGTGAACCTCCAAGA
AAACTGAATCGGGATAAATTGAAAGCGAAAAACAAAACGTCAAGACACAG
TACGCGGAGTGCAGACGAGGTGGATATTTCACGAAGGAAAGAGGACGATT
TTACAGAAGAAAATATACAGGATAAACATAAAGGTGAATACAATATTGAA
AATGAACATATGCAAGATACTTCTGAACTACAAACTTGTTCAAGGTGTGA
CCATGAACAGAATCGAATACAAAATGGCGATGAGGGAGGGGGTGGAGGAA
ATTTGCGAATGGAAGAACCTTCGTGTCTCTCTAAATTTATATGTTGTCGC
AGAAATCGTAAAAATAGTCTTTCATATAAAAACAATAACGTCTACCCTTA
TACGTTGGAACAATATTTAAAAGTGGCTGATAGTGAAGTATCATCAACAG
TTGATAGTCGGAGCACGTGTTTTAGTAGCTTGAATACCGAACAAAGTAGC
CAGTGTCCTACAATCACTTCCTCTTCTGAGCAATCAAGAGTTTTTGGTTC
AGAAAATTCTTCAGCTAATTTATCTCATGACTCCGGATTTGATGAACCTC
AATGTTTTATCAATATGATATACGAGAACCATCGTTGTAAAGGGTATTAT
AGTTGCCATAAGAAAGACAAAGCTAGTTTGAATATTCACCTTAAAAACTT
GATGAATTGTATGCCTAAAAGTTTTGGAGAAAAGGAAGATGAAACTGATC
AACCGATGAGAACTTTTAAAGGAGCTTCTTTGAGGAAAAGAAGAAATGCT
ATTTGTGAGACTTCAAACGAGGCAAGGAAAAAGTTTTACGATGCACTTTG
TGCCTTCATGACATTACAAGCAATGGCCAAATATGATTTCTTATGATCTG
AATCATTAATGGAGGATTTTTCCCAGCATACAACTGGAGAAGAGAATATA
GatgttcattttttttgaaaagttttgtttgtGGTTGTACGGATCaatcg
aatttgaaatgttttcttttcgctgtgaattttttttttgctcactgTTT
TTCATACAACACAATGTTTACATGACCGAAGGAACTGTACTTAGGAAATT
CGAACCCTCCAACGCACGGCTTTTTTCAAGGTTCTTCTATAAAGAGGGTC
GGAAAAGGAGAAACGAAGGAGAGTGTTAAGAGGAAATGACAACGTTTATT
CAGTGGATAAAACAACATCAGTAACAGAAGACTTGTCAAAACTTTGTCAc
atacttaaaaatgatttttcctCCTTATTGCTTTGGTTGCAAACCATTGA
AAGTTTGTGATGATGCCTTCTCCACTTACACACCACTGATCAAAAGTGAA
GTGCTTTTCAATCTCAAGTAGAGAGTGGACATGTTAATAATAATGGCAAA
TTCACAAAATCAACAGTTTTTTTGACAAGTGAGAGCCTTTTTACCCATTG
TCTTCTATCTCTTGGTTAAATGTcaaaatacctgaaaaaaatGTCGTAAC
ATTCTAGTGCCTCGCAGATTATCTTAAGCCCAATAGGATTAATCCCAAGA
TGCTTTTGATCACAACAACACAACActtcaaattttttcaaaaagggtgT
CATCGATTTACACACTTGAAAATTATTataatataattattatttcccTT
TAATTTATTACATGAAATTTtatatacaaaaaagaaaaatagttttaaat
atttttttgatgcAAAATAATTCCATAATTCTTCGGG Run BLAST on NCBI protein sequence of TCONS_00059126-protein >TCONS_00059126-protein ID=TCONS_00059126-protein|Name=TCONS_00059126-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MKLMRMAEETQRNSSSSSKTFEIRKMGCSFLRQCRRRTQSEPPRKLNRDK
LKAKNKTSRHSTRSADEVDISRRKEDDFTEENIQDKHKGEYNIENEHMQD
TSELQTCSRCDHEQNRIQNGDEGGGGGNLRMEEPSCLSKFICCRRNRKNS
LSYKNNNVYPYTLEQYLKVADSEVSSTVDSRSTCFSSLNTEQSSQCPTIT
SSSEQSRVFGSENSSANLSHDSGFDEPQCFINMIYENHRCKGYYSCHKKD
KASLNIHLKNLMNCMPKSFGEKEDETDQPMRTFKGASLRKRRNAICETSN
EARKKFYDALCAFMTLQAMAKYDFL Run BLAST on NCBI transcript from alignment at scaffold_318:241657..243881+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059126 ID=TCONS_00059126|Name=TCONS_00059126|organism=Clytia hemisphaerica|type=transcript|length=2225bp|location=Sequence derived from alignment at scaffold_318:241657..243881+ (Clytia hemisphaerica)
AAAAATTGAGGGAGAGACTCATTGGTTAtttgattaaagtttttctGACT
CTTTAGAATATTCCAATGTTCATTTTGCTGttagatttttgaatttcgtc
aattattttttttgatttgaagattTCTTTGCGGAGCTAACGTAAACTTT
TatgtttgataattttttgaagCGCGTGTATCATGAATTTTAGTTCAGTT
GACACACGAAgttctttcaacgttcatctaacggtCATAACATCCTAAAA
TGTTAGATGGACgttaaaagaacgttgtgtATATAACTGGAAAAGTTAAT
TTATTGTACCTTAGATGAATGAAATTAATGAGAATGGCAGAAGAAACTCA
AAGAAATAgttcatcatcatcaaaaacattcgaaattcgtaAAATGGGTT
GTTCTTTTTTACGACAGTGTCGTCGGCGTACTCAAAGTGAACCTCCAAGA
AAACTGAATCGGGATAAATTGAAAGCGAAAAACAAAACGTCAAGACACAG
TACGCGGAGTGCAGACGAGGTGGATATTTCACGAAGGAAAGAGGACGATT
TTACAGAAGAAAATATACAGGATAAACATAAAGGTGAATACAATATTGAA
AATGAACATATGCAAGATACTTCTGAACTACAAACTTGTTCAAGGTGTGA
CCATGAACAGAATCGAATACAAAATGGCGATGAGGGAGGGGGTGGAGGAA
ATTTGCGAATGGAAGAACCTTCGTGTCTCTCTAAATTTATATGTTGTCGC
AGAAATCGTAAAAATAGTCTTTCATATAAAAACAATAACGTCTACCCTTA
TACGTTGGAACAATATTTAAAAGTGGCTGATAGTGAAGTATCATCAACAG
TTGATAGTCGGAGCACGTGTTTTAGTAGCTTGAATACCGAACAAAGTAGC
CAGTGTCCTACAATCACTTCCTCTTCTGAGCAATCAAGAGTTTTTGGTTC
AGAAAATTCTTCAGCTAATTTATCTCATGACTCCGGATTTGATGAACCTC
AATGTTTTATCAATATGATATACGAGAACCATCGTTGTAAAGGGTATTAT
AGTTGCCATAAGAAAGACAAAGCTAGTTTGAATATTCACCTTAAAAACTT
GATGAATTGTATGCCTAAAAGTTTTGGAGAAAAGGAAGATGAAACTGATC
AACCGATGAGAACTTTTAAAGGAGCTTCTTTGAGGAAAAGAAGAAATGCT
ATTTGTGAGACTTCAAACGAGGCAAGGAAAAAGTTTTACGATGCACTTTG
TGCCTTCATGACATTACAAGCAATGGCCAAATATGATTTCTTATGATCTG
AATCATTGATGGAGGATTTTTCCCAGTATACAACTGGAGAAGAGATNGAC
ATTACAAGCAATGGCCAAATATGATTTCTTATGATCTGAATCATTAATGG
AGGATTTTTCCCAGCATACAACTGGAGAAGAGAATATAGatgttcatttt
ttttgaaaagttttgtttgtGGTTGTACGGATCaatcgaatttgaaatgt
tttcttttcgctgtgaattttttttttgctcactgTTTTTCATACAACAC
AATGTTTACATGACCGAAGGAACTGTACTTAGGAAATTCGAACCCTCCAA
CGCACGGCTTTTTTCAAGGTTCTTCTATAAAGAGGGTCGGAAAAGGAGAA
ACGAAGGAGAGTGTTAAGAGGAAATGACAACGTTTATTCAGTGGATAAAA
CAACATCAGTAACAGAAGACTTGTCAAAACTTTGTCAcatacttaaaaat
gatttttcctCCTTATTGCTTTGGTTGCAAACCATTGAAAGTTTGTGATG
ATGCCTTCTCCACTTACACACCACTGATCAAAAGTGAAGTGCTTTTCAAT
CTCAAGTAGAGAGTGGACATGTTAATAATAATGGCAAATTCACAAAATCA
ACAGTTTTTTTGACAAGTGAGAGCCTTTTTACCCATTGTCTTCTATCTCT
TGGTTAAATGTcaaaatacctgaaaaaaatGTCGTAACATTCTAGTGCCT
CGCAGATTATCTTAAGCCCAATAGGATTAATCCCAAGATGCTTTTGATCA
CAACAACACAACActtcaaattttttcaaaaagggtgTCATCGATTTACA
CACTTGAAAATTATTataatataattattatttcccTTTAATTTATTACA
TGAAATTTtatatacaaaaaagaaaaatagttttaaatatttttttgatg
cAAAATAATTCCATAATTCTTCGGG Coding sequence (CDS) from alignment at scaffold_318:241657..243881+ >TCONS_00059126 ID=TCONS_00059126|Name=TCONS_00059126|organism=Clytia hemisphaerica|type=CDS|length=1956bp|location=Sequence derived from alignment at scaffold_318:241657..243881+ (Clytia hemisphaerica)
ATGAAATTAATGAGAATGGCAGAAGAAACTCAAAGAAATAgttcatcatc
atcaaaaacattcgaaattcgtaAAATGGGTTGTTCTTTTTTACGACAGT
GTCGTCGGCGTACTCAAAGTGAACCTCCAAGAAAACTGAATCGGGATAAA
TTGAAAGCGAAAAACAAAACGTCAAGACACAGTACGCGGAGTGCAGACGA
GGTGGATATTTCACGAAGGAAAGAGGACGATTTTACAGAAGAAAATATAC
AGGATAAACATAAAGGTGAATACAATATTGAAAATGAACATATGCAAGAT
ACTTCTGAACTACAAACTTGTTCAAGGTGTGACCATGAACAGAATCGAAT
ACAAAATGGCGATGAGGGAGGGGGTGGAGGAAATTTGCGAATGGAAGAAC
CTTCGTGTCTCTCTAAATTTATATGTTGTCGCAGAAATCGTAAAAATAGT
CTTTCATATAAAAACAATAACGTCTACCCTTATACGTTGGAACAATATTT
AAAAGTGGCTGATAGTGAAGTATCATCAACAGTTGATAGTCGGAGCACGT
GTTTTAGTAGCTTGAATACCGAACAAAGTAGCCAGTGTCCTACAATCACT
TCCTCTTCTGAGCAATCAAGAGTTTTTGGTTCAGAAAATTCTTCAGCTAA
TTTATCTCATGACTCCGGATTTGATGAACCTCAATGTTTTATCAATATGA
TATACGAGAACCATCGTTGTAAAGGGTATTATAGTTGCCATAAGAAAGAC
AAAGCTAGTTTGAATATTCACCTTAAAAACTTGATGAATTGTATGCCTAA
AAGTTTTGGAGAAAAGGAAGATGAAACTGATCAACCGATGAGAACTTTTA
AAGGAGCTTCTTTGAGGAAAAGAAGAAATGCTATTTGTGAGACTTCAAAC
GAGGCAAGGAAAAAGTTTTACGATGCACTTTGTGCCTTCATGACATTACA
AGCAATGGCCAAATATGATTTCTTATGAATGAAATTAATGAGAATGGCAG
AAGAAACTCAAAGAAATAgttcatcatcatcaaaaacattcgaaattcgt
aAAATGGGTTGTTCTTTTTTACGACAGTGTCGTCGGCGTACTCAAAGTGA
ACCTCCAAGAAAACTGAATCGGGATAAATTGAAAGCGAAAAACAAAACGT
CAAGACACAGTACGCGGAGTGCAGACGAGGTGGATATTTCACGAAGGAAA
GAGGACGATTTTACAGAAGAAAATATACAGGATAAACATAAAGGTGAATA
CAATATTGAAAATGAACATATGCAAGATACTTCTGAACTACAAACTTGTT
CAAGGTGTGACCATGAACAGAATCGAATACAAAATGGCGATGAGGGAGGG
GGTGGAGGAAATTTGCGAATGGAAGAACCTTCGTGTCTCTCTAAATTTAT
ATGTTGTCGCAGAAATCGTAAAAATAGTCTTTCATATAAAAACAATAACG
TCTACCCTTATACGTTGGAACAATATTTAAAAGTGGCTGATAGTGAAGTA
TCATCAACAGTTGATAGTCGGAGCACGTGTTTTAGTAGCTTGAATACCGA
ACAAAGTAGCCAGTGTCCTACAATCACTTCCTCTTCTGAGCAATCAAGAG
TTTTTGGTTCAGAAAATTCTTCAGCTAATTTATCTCATGACTCCGGATTT
GATGAACCTCAATGTTTTATCAATATGATATACGAGAACCATCGTTGTAA
AGGGTATTATAGTTGCCATAAGAAAGACAAAGCTAGTTTGAATATTCACC
TTAAAAACTTGATGAATTGTATGCCTAAAAGTTTTGGAGAAAAGGAAGAT
GAAACTGATCAACCGATGAGAACTTTTAAAGGAGCTTCTTTGAGGAAAAG
AAGAAATGCTATTTGTGAGACTTCAAACGAGGCAAGGAAAAAGTTTTACG
ATGCACTTTGTGCCTTCATGACATTACAAGCAATGGCCAAATATGATTTC
TTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059126-exon-scaffold_318-1491911889:241657..242918 | TCONS_00059126-exon-scaffold_318-1491911889:241657..242918 | Clytia hemisphaerica | exon |
| TCONS_00059126-exon-scaffold_318-1510915933:241657..242918 | TCONS_00059126-exon-scaffold_318-1510915933:241657..242918 | Clytia hemisphaerica | exon |
| TCONS_00059126-exon-scaffold_318-1575043694:241657..242918 | TCONS_00059126-exon-scaffold_318-1575043694:241657..242918 | Clytia hemisphaerica | exon |
| TCONS_00059126-exon-scaffold_318-1491911889:243007..243881 | TCONS_00059126-exon-scaffold_318-1491911889:243007..243881 | Clytia hemisphaerica | exon |
| TCONS_00059126-exon-scaffold_318-1510915933:243007..243881 | TCONS_00059126-exon-scaffold_318-1510915933:243007..243881 | Clytia hemisphaerica | exon |
| TCONS_00059126-exon-scaffold_318-1575043694:243007..243881 | TCONS_00059126-exon-scaffold_318-1575043694:243007..243881 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_318 | supercontig | scaffold_318:241657..243881 + |
Blast
The following BLAST results are available for this feature:
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