TCONS_00059114 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059114
Unique NameTCONS_00059114
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3154

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059114 ID=TCONS_00059114|Name=TCONS_00059114|organism=Clytia hemisphaerica|type=transcript|length=3154bp
GAAAGtgcattttcatattttcatcatTCATGctttttttggtcaatttt
tatttcttttaccACCATTTACTTTAATTATATCTCAATCCTTCAATTTT
ATATAGCAAAAATTAAATACAAGTGCCGATGATGATAAGGAAGGTAtcaa
tattttgttgttttttatatttgattggtTTTGGCTATTCACTtcccatt
ttgaaaaatgcaacaagagaagaaatcaaaaggaaagaTCTTCTTCCACC
TGATCATATTGCTGGTGCACATATGGAACAAGATGGACACATAAATAAGG
ATTATCATCGGGAAGTATTCTTAGGTAAGCTTGTTAAAGAAGGAGTTTTG
GTATGGGAGAATATGGCTGGTTACAAGAAGTTGATCAAAGTCTTTGATGA
AGTTGATAAAAGTAATGATAGACAAATTGATAAAGAGGAGATGAAGAATT
GGATTCATGACAGAATCATGGAGCATTATAATGCAGCAACAGAAGAAAGC
AATAAGATTTTTGGAAAGGTAGATCATGATCAAAATGGATTAGTGGCATG
GCCAGAATACAAAGCACAAATTCTTGGTCTGAACCCTAAAGATTATGAAA
AAGACAATCTGACAGTGATTGAAGACAAGTCTGgtcaatttgaaaaagaa
attcagcATTGGTTAAAGGCTGATTTTAATGGAGATAAAGTGCTGGACAA
GAATGAGTTTTTGGCCTTTTATCATCCGGAACATAACAAGAAAACAATTG
AACTAATGGTTAAAGAAATGCTCTCATCCTTTGATAAAGATAACGACCAT
ATCATAACATTAGAAGAATTCACAGCATTACCCCCTGGGGAAGTCGACCC
TGAAGAAGCTGATGAAGATAAGTTGTACCAAGAAGagaAAGCTAAAGAAT
TCAAAAGAGACATGGACTTGAATAGCGATGGAAAGGTTGGCAAAGAAGAG
CTTATGCAATATTTAGATCCTCGAAACAAAGAACACGCTGTAAAGGAGGC
AGAATTCCTTATAAGATCTTCAGATAGAAATAGAGATGGTAAAATTAGTG
AACATGAAATGCTAATGAGCTATAGTATCTTTACTGGTAGTAGTTTAACG
AACTTCGCTCAAGTGCTACATGATGAGTTTTAAAGAAGTGCTGTCTTGCA
TTTTTGCTCTCGTGGTGAATCAAACTGTCTCGATTCAGGATATCCGCTTC
TCCAATGGATTCTGATATTACTTATCGTTGTCAACATTTGATTGGCTCCA
AATGACGTATGGGATAGAAGTGGTGCATAAATCATGAATGAGACtaatta
tctttattataataATGAATTTCTTTAAAGGTTAAAAACCTTTTGATAAC
ATCACCGAGAATTCATTTAAATCTTATCTATGTTGattgttgttattttt
agaaaatttaagaacgaaTATAATGATAACAGCTTTATTTTTGTACAATT
TAACTTTTGCGAAAAATCTCATTATATTACTATTCTTTAAGATATATCCA
TGGTATATCTAAGCTTTGAATTTCCATAAATAAGTGGCGATGCCCTAACT
TTGCATCTTAATTATCCGaatacactcattttgttttataagcataacgt
ttataagcataacgtttataagcatactgaagctcaaatttccagaaaaa
ttaagcatatgctaagcataccttgaggctcagccaaagaaatttttaaa
atcataatttccaaaacttcagaaaataacagaagaaagaatcatatatc
atatatcatatggtaaacattcgaaaacaataaaatgtcttcatttctct
CAAGATTAAAGAGAGGGGACAATGcgctcaaaattgagctttacttaagc
atagtgagcttcagccgaaatttaccgtatgcttataaaacaaaatgagt
gtaaCCATGGATTTATTTAACATGCACCTGAGTGTTAGTAGGGGAGGCTA
ACTTTTATGAGCCGTAGCATTTTTCGTGGGACTCGACCGCATGCGATTGA
TTAGTAGATAGGATTATGAGAGTTTTttgagaaatgaaaaatgacaaaag
taAGTTGATGATTTTTCAATGCTTTCGAAGTTCAAAAATCTGTCAGTTAG
AgtacgattgacgtcaaattttgtctaaaacgTAGTccgaatcgcagacc
tctatagatatattctatataagaaaaacttttcgctagaggatgagcag
atgCCTATCTAAAAACAGATTCCACAGTATTTCGAACTTTAAATCATCAT
ATCTTTTTGTGTGTTAGAGTATAAGATTTGTTGTAGTATACTTTTGTTCA
GAATTTCATGATAACTAtcatttttgctgaatttgacTTGTAAGaatcgt
caattttttactcatttttgtgGGGTTAGGGGTTTTTCCTACGACGTCAG
TTTTTTGGCATAAAAACTGTTGCTAAGCCTAATCCGCGGGCCCCTCTCAA
AAAGTCTCCTATCTGCTTTCGAATCAATCACATGCGGTTGAGCCCCACGA
GAAATGCTACCGATCATAAGATTGACCCCCTACTTTGCACCTGACGTTCT
TTTACAGTATGTATGTATTTACATTATGTTTATTCTGCTCTGCTGATTAT
TTTCCGTGGTTAAGTTTCTGTAGTGCTTGCTTGAAGAGTGAGTACTGTAT
ATTTCCTACACGTTTGGCTAAAAAACAGACAATTACAATATTACCGATGT
GATGCCCGATGGTTTCTATATAAAAAGTATGAAATGGAAATTTGCATATC
TCATGTTTACGTAAGTTCTTCCATTTCGTGTATCGTGTAAGCTAACATTC
ACCTGATTTTGACCGAAATTGATGGATAAACAGTTATTTCGTCCTTTAGC
TGAAATTTTACTTTGATTTATGAATAGGTGTTAGGTCTGGTGTAGACGAT
ATTTTATTTAATTAGTTTTTGACTGGAATTTCAGCGTTTGCTTTTTGGTT
ACGGCTtatgttatttattttattttacggGTTTATAGGGTAAATTAGTT
TTTATGTTTCAACGTTGTATAAATTGATTGTATTGAAACTAAATCGAGGT
TaacttttttatactttttgagaatattttgtgaattttttatgTAACAT
TTGTATCATTAATTGAAGATTTACTAAAGTTTGAATTATACGCATGCGTC
CAGA
Run BLAST on NCBI

protein sequence of TCONS_00059114-protein

>TCONS_00059114-protein ID=TCONS_00059114-protein|Name=TCONS_00059114-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
MMIRKVSIFCCFLYLIGFGYSLPILKNATREEIKRKDLLPPDHIAGAHME
QDGHINKDYHREVFLGKLVKEGVLVWENMAGYKKLIKVFDEVDKSNDRQI
DKEEMKNWIHDRIMEHYNAATEESNKIFGKVDHDQNGLVAWPEYKAQILG
LNPKDYEKDNLTVIEDKSGQFEKEIQHWLKADFNGDKVLDKNEFLAFYHP
EHNKKTIELMVKEMLSSFDKDNDHIITLEEFTALPPGEVDPEEADEDKLY
QEEKAKEFKRDMDLNSDGKVGKEELMQYLDPRNKEHAVKEAEFLIRSSDR
NRDGKISEHEMLMSYSIFTGSSLTNFAQVLHDEF
Run BLAST on NCBI

transcript from alignment at scaffold_318:2816..12931+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059114 ID=TCONS_00059114|Name=TCONS_00059114|organism=Clytia hemisphaerica|type=transcript|length=10116bp|location=Sequence derived from alignment at scaffold_318:2816..12931+ (Clytia hemisphaerica)
GAAAGtgcattttcatattttcatcatTCATGctttttttggtcaatttt tatttcttttaccACCATTTACTTTAATTATATCTCAATCCTTCAATTTT ATATAGCAAAAATTAAATACAAGTGCCGATGATGATAAGGAAGGTAtcaa tattttgttgttttttatatttgattggtTTTGGCTATTCACTtcccatt ttgaaaaatgcaacaagagaagaaatcaaaaggaaagaTCTTCTTCCACC TGATCATATTGCTGGTGCACATATGGAACAAGATGGACACATAAATAAGG ATTATCATCGGGAAGTATTCTTAGGTAAAtgatttttagagtttttttta tCCCACCCACCTAAATTATCATTTCAGTattttgaatgctaaaatcgatc acaatattccaacaaaaagACGTTGACTCAGCAAAATCCAGCTGCAGTAG GCATTATTTNGTCCCAGGCCTCGGAAAATCGGGCTCGATTGAGTGAATTC TATTGGTCGTTGACTGAAAGTCGGGTAACATTTTGAAATCGGAGCCAAAT ATCCCGTTTCGGTTtcaagtaaacaaaaataaCTGATACAAAAACGGGGT TTGCAGTTTGAAACAGTTTGAAcagcattttcatattttcatcatTCATG ctttttttggtcaatttttatttcttttaccACCATTTACTTTAATTATA TCTCAATCCTTCAATTTTATATAGCAAAAATTAAATACAAGTGCCGATGA TGATAAGGAAGGTAtcaatattttgttgttttttatatttgattggtTTT GGCTATTCACTtcccattttgaaaaatgcaacaagagaagaaatcaaaag gaaagaTCTTCTTCCACCTGATCATATTGCTGGTGCACATATGGAACAAG ATGGACACATAAATAAGGATTATCATCGGGAAGTATTCTTAGGTAAAtga tttttagagttttttttatCCCACCTAAATCATCATTTCAGTattttgaa tgctaaaatcgatcacaatattccaacaaaaagACGTTGACTCAGCAAAA TCCAGCTGCagttaacctgagatcagattgtggttgttttctgcacacca cgctgaagctttaattttcaagcgcctttagaggtttaccgtgcgcgtaa gaaaattacgaacatctgttatcaggttagctgCAGTAGGCATTATTTTC AAACAAGTGGCTAGATGCACAGATTGCTCAGCATGCCTTGTGCGTGGTGT GCCACAGGATACCTTGGGACTACAGTGTACagtatctgacaaaacatggg acagcaattcatCGACAGCTTAAAAAATCTGTGTgtcaatttcaagaaat tttgcgCAAGTCATCAATGACAATGATGCAAGAAATCTACAAAAGAAACC AGtaaaagatcaaagagaaaagATGTAATTGGGAAAAAATGATTGTTCAC CAATCTTGGAGATTTCCCAAACTCAAGATTAAGTTGGTGGGTTTCACGAG TTTTCCTGTGGCATATATATGAAGACTCCCTGGATTGGTGAACatgaaga aataaaataaaaaataaaaattcacctccctggaaaatatttagattgtt ttattttgttcaatccCAAATGCTTATGAAAGCGCCAAATATTTTACCAT CCAATCACGGCAATatagattgttttattttgttcaatccCAAATGCTTA TGAAAGCGCCAAATATTTTACCATCCAATCACGGCAATatagattgtttt attttgtacaATCAAAATATTGCTGTACGATTGTTTAACAAGAAGTATCC GATCAAATGGAGGTAAAGCACTTTTATCCAATTAGAAAGGattcttagaa aaaattaaaatctttgcatcaaattcccgctctCGTTTGAGAattaaagt taagaaaaaatTCATCCCTTAGAATCAATAGTGACAGTGCTGAATTATTG AAAGTGACAATATTCAAAGCTCCTAATGTTTCACACAGATTTCGCATTAA GCAAGGTTAAAAGCCTTGAACATATATCATTCATAGTCGCATTTTAACCA TCTAGAGCCTTACAACGTCCTAACAGACCACCAACACAAATAAAAGAAAG CGTTAATAAAAACTGTAAATGATCTTGTGAAAACCCCAAATGATAAAGGG TTTAGGCAGTTGCAGTCTTACTCCAATTCAGCAAAGCTTTTGACAAAGTG TGTcgtcaggggggggggtgttagAGATAACAAACTTAATTGCATTGAGG ACTTCTTAAGAGAAAGATCACAAAAAGCTCTTGTCAGAGGATCTGAATCA ACTGAAGGGAGTGTTTAAGGTTCAGAAGTACCACAGGGTTCGGTTTTGGG TCCATTATTGTTTTTTGGTTTATATCAATGATACTTCAGCAGCAACCACT TCATCAGAAATAGACTTATACACAGACAATGCCTTGCTCTACAAAAATGT CAAATCTATACAGGACAAGCACAATCTTCAAAAAGACCTAGATCATCTCA TTGAGTGTAGCAAGCCTGGTTGATGCAGTTCAATGCAGAGAAAAGCAAAG TTGTACAATATATTATGCAATACGCTCACTACAAGAGGCTGCAAGAGGTC ATATTCAGAGTAAAGAATCTAAtaataaacaaaatcttttaaaaacaaat tttcaagaaTGACCAATAAAGTAGtgctaaaaataaaattaaaaacaatg tAATAAAATGATATAGTAAAGATTTATTGCAttattttaaaatgtatttt tagCACTATTATactggtcatttttgaaaatttgtttttaaaagatttgt ttGTTATTAGATTTTTTACTCTGAAGATGACCTCTTGTAGGAGCATCTAG TATATAGTTTTtaacaacatcaaaaacatgaatcTTCTGATTATTCTTTT TATCATTACATTAGTCGCCCaaggaaacatttttcaaagttgtaCGAATA ACAAATAAACGAAAAATAACTGAAGGTACCTACTCAATCCATGGGAACAA TATTATATTAAACTTATTAAAACTGCAAAATACATAATTCTCTtaatata ctttttatttttttaatggaagataacttttaaaatattgatatatgGCA CTGGTTCTTTACTAANAACTTGTTAAAACTGCAAAATACATAATTCTCTt aatatactttttatttttttaatggaagataacttttaaaatattgatat atgGCACTGGTTCTTTACTAATCAAGCACTCTTATGGCATTGATTTACCA CACTTGTTTTTATGCATAATTCTCGAAAAGAAGTTGACATCTAAGTAGCA CATAACAACCAAAGCTGCTAAAGCACAAAACTTCCCACACTTAATCTCAA CGTAACCTCCAAAAATGCTCAAAAGAGGTAAAGCTCCAAAATTACATTAT TGTTGAGTATGCTTCTACAGTAGGGATCTAGTTGGAGATCAGTCTTTAAT ATACCAATTAGAAAGTATGCAGGGCAAAATTTTGCTGGCAATTTGTTTGG TGTAACCGGCAGTGTAATAAGAGTAGCTGGCAAATTACCAGCTGTCATAG GGTGGAAATAGTGCCGgcaaaaattgtaaacaagTTTTCTTTGCTAGCGG AAAATTGCTGGATTCTTTTCTTTGTTGCCAGCTGATTGCCAGCTAAAATC TCCCCTTAGGCCAAAACCTTTTCTGATAATAGAATTTACACAAATGTTGC TTGCAAACTGTCTACCGTAATTGATAGATTGCCGGATTCAACAGGTATGT AGTCAGGATGCCGATAGAGATTTTCTGATATCAAGCTGgaagaaattctt ttttgtaCTTGTTTGTATTAAAATCGCTTTGAGATTCACAATTATGAGTC ATGATGAATAATCAAAAACGTTAGCAAGAAAACGATAACAAACTGTACAT AAATTGcgtattagatttttttcttatagttgttttgatgctggagtcAG CTGTAGTTTTTAAGGTTACTTAGAACTTATGACATCATGATTAAGAAAAG GGCTTTTTGTAGGTCTTTGTTGTGAAAACTATTATATTATTGTTAAATca acttttcatttttgacaaaaatttattgttttcacTAGTAGCAGAGTAAT TCTCCTTTAGCATATCTCTACAATTTTCACAGGTAAGCTTGTTAAAGAAG GAGTTTTGGTATGGGAGAATATGGCTGGTTACAAGAAGTTGATCAAAGTC TTTGATGAAGTTGATAAAAGTAATGATAGACAAATTGATAAAGAGGAGAT GAAGAATTGGATTCATGACAGGTATATTTGTCTTCTTATCCTTTTTCCAT TTTCTGTACTTTTGGAGTTACTTTCATAACCCTTTGAGACCCATAACCCT TGTAGTTGAGCTACAGACTTGATTTTTTGAGTATGATCTACATTTTATAT GCATATCATTATCTCGTTTACGGAATCTTCATAAGTCTTGTCGTTCTCGG GATAATTTTTGGGCCTAATAATGGTCATAAGGGTAATTTCAGGTTTGTGA AATTATTTACAAGAAACTTTTTTAAGGGGTTTTTCTGGGATTAATTGGTG GATTTCATTCTTCTGACAGGAtaaacagacagacagacagacagacgtCA CTAacgaaaaagtttttattgaaaaagaaaatatgttCAGTACATATCAA CATAATGttatttcaaggtttttaaatCATCTGGTTGGAAAGTTATCAAG CCTCTAATATCCGGGTAACCAGAGAAGACCCATTGGGTTTGAAAGGGATA ATGGTGGGGCAACTTTCATAGCAAACAAACTTTAGCTTAGCTTTAAAATC AGAAAGTCTTAACATATAACGTTACGTTATAAATAACGTACAGCTTTCAG ACCAGAAGACTGCTGTTTTGAAGTTAAGAAAGTAGCGCCCTGCTTATGAA AGTAACTCCGATGACAGCAGAGCATTTAAAAAGGGGAAACTTCCCCTAAT TTCCTTTCAACTTTATGACTGTGTGTAAACAAAGTCCTGGTAAGTAGGGA AGCTTGAATCGGTTGAGGGTTCTTAACTTCATCAAAAGAtatgaaatgaa ataaataaaggtTGTTAAGTTTTTTGTATTTCTTCTatctttttcaatca tttttacacaaacaagagaaaaataaataaaaaattcaaaaaatataatt catGTTCAAAGCTCTGTTTTTCTCCAGTCTCTTTCTCTTCAATTTATAGT TCTTGGGACTTTTAAACCCAATGTGGTTGGGGTTCGAAGATTTTACAAAT TAAGGTGTCGGTTGCTGAGTAAGGTGGGGAATGTGCTGATAAgagatttc aggtgggggtaacccttTTTAGGTGGGTTGGAGTGTTGCTCGCTATGAAA TTTATTATTATGATATTCAGAATTATCggtgatccaaaaaatatctgcaa tctgattggttaaaaagagtacaatatatcttgtattttacatgtaaaaa tataaattgacgaaaagatgttgttgcattgtagcggtagtagcaatcta acgtcactttgctacaaaagtgccctgcgctttttcccaacacaaaaatt gcattttttgggtcaccgataaaccagttatcagacatttgctcgtacaa tatggaaatattttactcgttccgtaTTTTCCGTATATTTNATTAATTCC CTAAACTACTAATtacttttttcatgattgtgTGAATTATATTGTAGAAT CATGGAGCATTATAATGCAGCAACAGAAGAAAGCAATAAGATTTTTGGAA AGGTAGATCATGATCAAAATGGATTAGTGGCATGGCCAGAATACAAAGCA CAAATTCTTGGTCTGAACCCTAAAGATTATGAAAAAGACAATCTGACAGg taaaaaagtctaatttttcttgattttgttttaaaaaatctttgcaACTC TTTTGTAAATAACGTATATTATAAGTCCACTTGTTTTTTGTTTAGTTTAG AAAATGTCATAAATTCTACATTATGTTGTATTATCTTACAAAGTTATTCT CCTTTTAGAAATAGTTACATGCATTTACTCAGAGTAAATTTCATACTGAT TATTTGTTTTTTAGTGATTGAAGACAAGTCTGgtcaatttgaaaaagaaa ttcagcATTGGTTAAAGGCTGATTTTAATGGAGATAAAGTGCTGGACAAG AATGAGTTTTTGGCCTTTTATCATCCGGAACATAACAAGAAAACAATTGA ACTAATGGTTAAAGAAATGCTCTCATCCTTTGATAAAGATAACGACCATG TAAGGACACTGTTAGTCTGGAACCATACAAATTTTTACTCCATTTCACAA AGCTTACATGAGATAAAAATTAGTATGGTAGAattggagattttgaattt gccaccagaaaaaaaccgtttgaaaactggccaatcagaattttgttgca taaattttttttgttttaacagCCAACACAAATCAAAGACATATACTTTT TCGATCTATCTAGCGATAAAAAAAAGAGCaattaaaatcaacaaaataaa cTAAGTTtgcctttcttctctttttttgcTAGAATGTTCGTTCTGCTAGC AATCTTTTGAAATGGAGCTTCGTTCCGTTCCATCGTTCCGAATTCCAACT TGAAATAACGTAAAATGGAACAAAACCTTTTAATATTCtttaattttcat atttctagATCATAACATTAGAAGAATTCACAGCATTACCCCCTGGGGAA GTCGACCCTGAAGAAGCTGATGAAGATAAGTTGTACCAAGAAGagtaagt ttttttaaaatagAATTCATGAATTATCTCCTAACGTTTTCTAACTTTAG TCTTAGGTTTCCTCTATCGAATAATTGGAAGTGGTTTTGCTCGAGTATAC TGATAGTTCTACTTCATCATTTTATTGGATTACCTGCAGTAGGTAAAATA AGTTCCTCGCCAAActtaattttggatttttgctgCTCGCTGCTAAAATT GTTCTTCCTAACTTATTAAATCTCAATTAAAACATGTCTATCAGACTTAT TTTTTGAAGGAATAAATTTCAAAGATGAAGTTAATCATTCTAGCATTTTA GCTCGCTTATGCTTCTTACTCGATGTCTTTAGAGGGTGTCCTGAGTAAAA TACCCAGATCATTGCCATAGGTAGAAAAGATTATGCGTGTATCACGGAAT CTAACAAGATGGCTgagagtcgaaaatttcgccttttGTGCACAATTATT CATTTATGAACAACatttataaatgaaataaactGGGGAGCACTTGGATT GAAGAGTGTCGGGTACATGCAACCAAGCCTGTGAAAACtggcccttagag agaccaaattcaCGCGCAAAATTTAACTTTGAGTATCAATAGAGACCCat agagagactttgggagaTGTCTTTTAATTTATGTCGTAGTCTGTTTTTTA TTTCGTACCCTTAAAGAGACCTGAAGAGGGGAAATTCTGACCCCCGAAGG GAGACTTTTGCCTTTTTTGTGCAACAGAGACTTGGGAAGgtaagaaaaca gaaaatagaACAGAAGCATAGAAAAGCTTTATTTACAAATAGTCAAAAAT AGTAAAAGATTCTGATAAGAGCagaaaaattagcaaaattatcttgtaat atactgttctttggaatagactaaaaataggtcgtaaaaaagatgtcacg ggaccggaggcttggccccctactatacaCAAAGTATTTTCCAACGGTTT CTGCGGTCTGACATAGTCTGCCACAGTACAATTTTTCAGGACACCCTGTG TAATAATGATCTGGCGTGAAGCTTCGCATTTGTTGGCAGGAAGCCTGTTT GATTTACTGCATTGTATCCTCATTAtagacattttattttttcttcagga AAGCTAAAGAATTCAAAAGAGACATGGACTTGAATAGCGATGGAAAGGTT GGCAAAGAAGAGCTTATGCAATATTTAGATCCTCGAAACAAAGAACACGC TGTAAAGGAGGCAGAATTCCTTATAAGATCTTCAGATAGAAATAGAGATG GTAAAATTAGTGAACATGAAATGCTAATGAGCTATAGTATCTTTACTGGT AGTAGTTTAACGAACTTCGCTCAAGTGCTACATGATGAGTTTTAAAGAAG TGCTGTCTTGCATTTTTGCTCTCGTGGTGAATCAAACTGTCTCGATTCAG GATATCCGCTTCTCCAATGGATTCTGATATTACTTATCGTTGTCAACATT TGATTGGCTCCAAATGACGTATGGGATAGAAGTGGTGCATAAATCATGAA TGAGACtaattatctttattataataATGAATTTCTTTAAAGGTTAAAAA CCTTTTGATAACATCACCGAGAATTCATTTAAATCTTATCTATGTTGatt gttgttatttttagaaaatttaagaacgaaTATAATGATAACAGCTTTAT TTTTGTACAATTTAACTTTTGCGAAAAATCTCATTATATTACTATTCTTT AAGATATATCCATGGTATATCTAAGCTTTGAATTTCCATAAATAAGTGGC GATGCCCTAACTTTGCATCTTAATTATCCGaatacactcattttgtttta taagcataacgtttataagcataacgtttataagcatactgaagctcaaa tttccagaaaaattaagcatatgctaagcataccttgaggctcagccaaa gaaatttttaaaatcataatttccaaaacttcagaaaataacagaagaaa gaatcatatatcatatatcatatggtaaacattcgaaaacaataaaatgt cttcatttctctCAAGATTAAAGAGAGGGGACAATGcgctcaaaattgag ctttacttaagcatagtgagcttcagccgaaatttaccgtatgcttataa aacaaaatgagtgtaaCCATGGATTTATTTAACATGCACCTGAGTGTTAG TAGGGGAGGCTAACTTTTATGAGCCGTAGCATTTTTCGTGGGACTCGACC GCATGCGATTGATTAGTAGATAGGATTATGAGAGTTTTttgagaaatgaa aaatgacaaaagtaAGTTGATGATTTTTCAATGCTTTCGAAGTTCAAAAA TCTGTCAGTTAGAgtacgattgacgtcaaattttgtctaaaacgTAGTcc gaatcgcagacctctatagatatattctatataagaaaaacttttcgcta gaggatgagcagatgCCTATCTAAAAACAGATTCCACAGTATTTCGAACT TTAAATCATCATATCTTTTTGTGTGTTAGAGTATAAGATTTGTTGTAGTA TACTTTTGTTCAGAATTTCATGATAACTAtcatttttgctgaatttgacT TGTAAGaatcgtcaattttttactcatttttgtgGGGTTAGGGGTTTTTC CTACGACGTCAGTTTTTTGGCATAAAAACTGTTGCTAAGCCTAATCCGCG GGCCCCTCTCAAAAAGTCTCCTATCTGCTTTCGAATCAATCACATGCGGT TGAGCCCCACGAGAAATGCTACCGATCATAAGATTGACCCCCTACTTTGC ACCTGACGTTCTTTTACAGTATGTATGTATTTACATTATGTTTATTCTGC TCTGCTGATTATTTTCCGTGGTTAAGTTTCTGTAGTGCTTGCTTGAAGAG TGAGTACTGTATATTTCCTACACGTTTGGCTAAAAAACAGACAATTACAA TATTACCGATGTGATGCCCGATGGTTTCTATATAAAAAGTATGAAATGGA AATTTGCATATCTCATGTTTACGTAAGTTCTTCCATTTCGTGTATCGTGT AAGCTAACATTCACCTGATTTTGACCGAAATTGATGGATAAACAGTTATT TCGTCCTTTAGCTGAAATTTTACTTTGATTTATGAATAGGTGTTAGGTCT GGTGTAGACGATATTTTATTTAATTAGTTTTTGACTGGAATTTCAGCGTT TGCTTTTTGGTTACGGCTtatgttatttattttattttacggGTTTATAG GGTAAATTAGTTTTTATGTTTCAACGTTGTATAAATTGATTGTATTGAAA CTAAATCGAGGTTaacttttttatactttttgagaatattttgtgaattt tttatgTAACATTTGTATCATTAATTGAAGATTTACTAAAGTTTGAATTA TACGCATGCGTCCAGA

Coding sequence (CDS) from alignment at scaffold_318:2816..12931+

>TCONS_00059114 ID=TCONS_00059114|Name=TCONS_00059114|organism=Clytia hemisphaerica|type=CDS|length=6030bp|location=Sequence derived from alignment at scaffold_318:2816..12931+ (Clytia hemisphaerica)
ATGATGATAAGGAAGGTAtcaatattttgttgttttttatatttgattgg
tTTTGGCTATTCACTtcccattttgaaaaatgcaacaagagaagaaatca
aaaggaaagaTCTTCTTCCACCTGATCATATTGCTGGTGCACATATGGAA
CAAGATGGACACATAAATAAGGATTATCATCGGGAAGTATTCTTAGGTAA
GCTTGTTAAAGAAGGAGTTTTGGTATGGGAGAATATGGCTGGTTACAAGA
AGTTGATCAAAGTCTTTGATGAAGTTGATAAAAGTAATGATAGACAAATT
GATAAAGAGGAGATGAAGAATTGGATTCATGACAGAATCATGGAGCATTA
TAATGCAGCAACAGAAGAAAGCAATAAGATTTTTGGAAAGGTAGATCATG
ATCAAAATGGATTAGTGGCATGGCCAGAATACAAAGCACAAATTCTTGGT
CTGAACCCTAAAGATTATGAAAAAGACAATCTGACAGTGATTGAAGACAA
GTCTGgtcaatttgaaaaagaaattcagcATTGGTTAAAGGCTGATTTTA
ATGGAGATAAAGTGCTGGACAAGAATGAGTTTTTGGCCTTTTATCATCCG
GAACATAACAAGAAAACAATTGAACTAATGGTTAAAGAAATGCTCTCATC
CTTTGATAAAGATAACGACCATATCATAACATTAGAAGAATTCACAGCAT
TACCCCCTGGGGAAGTCGACCCTGAAGAAGCTGATGAAGATAAGTTGTAC
CAAGAAGagaAAGCTAAAGAATTCAAAAGAGACATGGACTTGAATAGCGA
TGGAAAGGTTGGCAAAGAAGAGCTTATGCAATATTTAGATCCTCGAAACA
AAGAACACGCTGTAAAGGAGGCAGAATTCCTTATAAGATCTTCAGATAGA
AATAGAGATGGTAAAATTAGTGAACATGAAATGCTAATGAGCTATAGTAT
CTTTACTGGTAGTAGTTTAACGAACTTCGCTCAAGTGCTACATGATGAGT
TTTAAATGATGATAAGGAAGGTAtcaatattttgttgttttttatatttg
attggtTTTGGCTATTCACTtcccattttgaaaaatgcaacaagagaaga
aatcaaaaggaaagaTCTTCTTCCACCTGATCATATTGCTGGTGCACATA
TGGAACAAGATGGACACATAAATAAGGATTATCATCGGGAAGTATTCTTA
GGTAAGCTTGTTAAAGAAGGAGTTTTGGTATGGGAGAATATGGCTGGTTA
CAAGAAGTTGATCAAAGTCTTTGATGAAGTTGATAAAAGTAATGATAGAC
AAATTGATAAAGAGGAGATGAAGAATTGGATTCATGACAGAATCATGGAG
CATTATAATGCAGCAACAGAAGAAAGCAATAAGATTTTTGGAAAGGTAGA
TCATGATCAAAATGGATTAGTGGCATGGCCAGAATACAAAGCACAAATTC
TTGGTCTGAACCCTAAAGATTATGAAAAAGACAATCTGACAGTGATTGAA
GACAAGTCTGgtcaatttgaaaaagaaattcagcATTGGTTAAAGGCTGA
TTTTAATGGAGATAAAGTGCTGGACAAGAATGAGTTTTTGGCCTTTTATC
ATCCGGAACATAACAAGAAAACAATTGAACTAATGGTTAAAGAAATGCTC
TCATCCTTTGATAAAGATAACGACCATATCATAACATTAGAAGAATTCAC
AGCATTACCCCCTGGGGAAGTCGACCCTGAAGAAGCTGATGAAGATAAGT
TGTACCAAGAAGagaAAGCTAAAGAATTCAAAAGAGACATGGACTTGAAT
AGCGATGGAAAGGTTGGCAAAGAAGAGCTTATGCAATATTTAGATCCTCG
AAACAAAGAACACGCTGTAAAGGAGGCAGAATTCCTTATAAGATCTTCAG
ATAGAAATAGAGATGGTAAAATTAGTGAACATGAAATGCTAATGAGCTAT
AGTATCTTTACTGGTAGTAGTTTAACGAACTTCGCTCAAGTGCTACATGA
TGAGTTTTAAATGATGATAAGGAAGGTAtcaatattttgttgttttttat
atttgattggtTTTGGCTATTCACTtcccattttgaaaaatgcaacaaga
gaagaaatcaaaaggaaagaTCTTCTTCCACCTGATCATATTGCTGGTGC
ACATATGGAACAAGATGGACACATAAATAAGGATTATCATCGGGAAGTAT
TCTTAGGTAAGCTTGTTAAAGAAGGAGTTTTGGTATGGGAGAATATGGCT
GGTTACAAGAAGTTGATCAAAGTCTTTGATGAAGTTGATAAAAGTAATGA
TAGACAAATTGATAAAGAGGAGATGAAGAATTGGATTCATGACAGAATCA
TGGAGCATTATAATGCAGCAACAGAAGAAAGCAATAAGATTTTTGGAAAG
GTAGATCATGATCAAAATGGATTAGTGGCATGGCCAGAATACAAAGCACA
AATTCTTGGTCTGAACCCTAAAGATTATGAAAAAGACAATCTGACAGTGA
TTGAAGACAAGTCTGgtcaatttgaaaaagaaattcagcATTGGTTAAAG
GCTGATTTTAATGGAGATAAAGTGCTGGACAAGAATGAGTTTTTGGCCTT
TTATCATCCGGAACATAACAAGAAAACAATTGAACTAATGGTTAAAGAAA
TGCTCTCATCCTTTGATAAAGATAACGACCATATCATAACATTAGAAGAA
TTCACAGCATTACCCCCTGGGGAAGTCGACCCTGAAGAAGCTGATGAAGA
TAAGTTGTACCAAGAAGagaAAGCTAAAGAATTCAAAAGAGACATGGACT
TGAATAGCGATGGAAAGGTTGGCAAAGAAGAGCTTATGCAATATTTAGAT
CCTCGAAACAAAGAACACGCTGTAAAGGAGGCAGAATTCCTTATAAGATC
TTCAGATAGAAATAGAGATGGTAAAATTAGTGAACATGAAATGCTAATGA
GCTATAGTATCTTTACTGGTAGTAGTTTAACGAACTTCGCTCAAGTGCTA
CATGATGAGTTTTAAATGATGATAAGGAAGGTAtcaatattttgttgttt
tttatatttgattggtTTTGGCTATTCACTtcccattttgaaaaatgcaa
caagagaagaaatcaaaaggaaagaTCTTCTTCCACCTGATCATATTGCT
GGTGCACATATGGAACAAGATGGACACATAAATAAGGATTATCATCGGGA
AGTATTCTTAGGTAAGCTTGTTAAAGAAGGAGTTTTGGTATGGGAGAATA
TGGCTGGTTACAAGAAGTTGATCAAAGTCTTTGATGAAGTTGATAAAAGT
AATGATAGACAAATTGATAAAGAGGAGATGAAGAATTGGATTCATGACAG
AATCATGGAGCATTATAATGCAGCAACAGAAGAAAGCAATAAGATTTTTG
GAAAGGTAGATCATGATCAAAATGGATTAGTGGCATGGCCAGAATACAAA
GCACAAATTCTTGGTCTGAACCCTAAAGATTATGAAAAAGACAATCTGAC
AGTGATTGAAGACAAGTCTGgtcaatttgaaaaagaaattcagcATTGGT
TAAAGGCTGATTTTAATGGAGATAAAGTGCTGGACAAGAATGAGTTTTTG
GCCTTTTATCATCCGGAACATAACAAGAAAACAATTGAACTAATGGTTAA
AGAAATGCTCTCATCCTTTGATAAAGATAACGACCATATCATAACATTAG
AAGAATTCACAGCATTACCCCCTGGGGAAGTCGACCCTGAAGAAGCTGAT
GAAGATAAGTTGTACCAAGAAGagaAAGCTAAAGAATTCAAAAGAGACAT
GGACTTGAATAGCGATGGAAAGGTTGGCAAAGAAGAGCTTATGCAATATT
TAGATCCTCGAAACAAAGAACACGCTGTAAAGGAGGCAGAATTCCTTATA
AGATCTTCAGATAGAAATAGAGATGGTAAAATTAGTGAACATGAAATGCT
AATGAGCTATAGTATCTTTACTGGTAGTAGTTTAACGAACTTCGCTCAAG
TGCTACATGATGAGTTTTAAATGATGATAAGGAAGGTAtcaatattttgt
tgttttttatatttgattggtTTTGGCTATTCACTtcccattttgaaaaa
tgcaacaagagaagaaatcaaaaggaaagaTCTTCTTCCACCTGATCATA
TTGCTGGTGCACATATGGAACAAGATGGACACATAAATAAGGATTATCAT
CGGGAAGTATTCTTAGGTAAGCTTGTTAAAGAAGGAGTTTTGGTATGGGA
GAATATGGCTGGTTACAAGAAGTTGATCAAAGTCTTTGATGAAGTTGATA
AAAGTAATGATAGACAAATTGATAAAGAGGAGATGAAGAATTGGATTCAT
GACAGAATCATGGAGCATTATAATGCAGCAACAGAAGAAAGCAATAAGAT
TTTTGGAAAGGTAGATCATGATCAAAATGGATTAGTGGCATGGCCAGAAT
ACAAAGCACAAATTCTTGGTCTGAACCCTAAAGATTATGAAAAAGACAAT
CTGACAGTGATTGAAGACAAGTCTGgtcaatttgaaaaagaaattcagcA
TTGGTTAAAGGCTGATTTTAATGGAGATAAAGTGCTGGACAAGAATGAGT
TTTTGGCCTTTTATCATCCGGAACATAACAAGAAAACAATTGAACTAATG
GTTAAAGAAATGCTCTCATCCTTTGATAAAGATAACGACCATATCATAAC
ATTAGAAGAATTCACAGCATTACCCCCTGGGGAAGTCGACCCTGAAGAAG
CTGATGAAGATAAGTTGTACCAAGAAGagaAAGCTAAAGAATTCAAAAGA
GACATGGACTTGAATAGCGATGGAAAGGTTGGCAAAGAAGAGCTTATGCA
ATATTTAGATCCTCGAAACAAAGAACACGCTGTAAAGGAGGCAGAATTCC
TTATAAGATCTTCAGATAGAAATAGAGATGGTAAAATTAGTGAACATGAA
ATGCTAATGAGCTATAGTATCTTTACTGGTAGTAGTTTAACGAACTTCGC
TCAAGTGCTACATGATGAGTTTTAAATGATGATAAGGAAGGTAtcaatat
tttgttgttttttatatttgattggtTTTGGCTATTCACTtcccattttg
aaaaatgcaacaagagaagaaatcaaaaggaaagaTCTTCTTCCACCTGA
TCATATTGCTGGTGCACATATGGAACAAGATGGACACATAAATAAGGATT
ATCATCGGGAAGTATTCTTAGGTAAGCTTGTTAAAGAAGGAGTTTTGGTA
TGGGAGAATATGGCTGGTTACAAGAAGTTGATCAAAGTCTTTGATGAAGT
TGATAAAAGTAATGATAGACAAATTGATAAAGAGGAGATGAAGAATTGGA
TTCATGACAGAATCATGGAGCATTATAATGCAGCAACAGAAGAAAGCAAT
AAGATTTTTGGAAAGGTAGATCATGATCAAAATGGATTAGTGGCATGGCC
AGAATACAAAGCACAAATTCTTGGTCTGAACCCTAAAGATTATGAAAAAG
ACAATCTGACAGTGATTGAAGACAAGTCTGgtcaatttgaaaaagaaatt
cagcATTGGTTAAAGGCTGATTTTAATGGAGATAAAGTGCTGGACAAGAA
TGAGTTTTTGGCCTTTTATCATCCGGAACATAACAAGAAAACAATTGAAC
TAATGGTTAAAGAAATGCTCTCATCCTTTGATAAAGATAACGACCATATC
ATAACATTAGAAGAATTCACAGCATTACCCCCTGGGGAAGTCGACCCTGA
AGAAGCTGATGAAGATAAGTTGTACCAAGAAGagaAAGCTAAAGAATTCA
AAAGAGACATGGACTTGAATAGCGATGGAAAGGTTGGCAAAGAAGAGCTT
ATGCAATATTTAGATCCTCGAAACAAAGAACACGCTGTAAAGGAGGCAGA
ATTCCTTATAAGATCTTCAGATAGAAATAGAGATGGTAAAATTAGTGAAC
ATGAAATGCTAATGAGCTATAGTATCTTTACTGGTAGTAGTTTAACGAAC
TTCGCTCAAGTGCTACATGATGAGTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037233XLOC_037233Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059114-proteinTCONS_00059114-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059114-exon-scaffold_318-1491911889:2816..3139TCONS_00059114-exon-scaffold_318-1491911889:2816..3139Clytia hemisphaericaexon
TCONS_00059114-exon-scaffold_318-1510915933:2816..3139TCONS_00059114-exon-scaffold_318-1510915933:2816..3139Clytia hemisphaericaexon
TCONS_00059114-exon-scaffold_318-1575043694:2816..3139TCONS_00059114-exon-scaffold_318-1575043694:2816..3139Clytia hemisphaericaexon
TCONS_00059114-exon-scaffold_318-1491911889:6948..7086TCONS_00059114-exon-scaffold_318-1491911889:6948..7086Clytia hemisphaericaexon
TCONS_00059114-exon-scaffold_318-1510915933:6948..7086TCONS_00059114-exon-scaffold_318-1510915933:6948..7086Clytia hemisphaericaexon
TCONS_00059114-exon-scaffold_318-1575043694:6948..7086TCONS_00059114-exon-scaffold_318-1575043694:6948..7086Clytia hemisphaericaexon
TCONS_00059114-exon-scaffold_318-1491911889:8513..8664TCONS_00059114-exon-scaffold_318-1491911889:8513..8664Clytia hemisphaericaexon
TCONS_00059114-exon-scaffold_318-1510915933:8513..8664TCONS_00059114-exon-scaffold_318-1510915933:8513..8664Clytia hemisphaericaexon
TCONS_00059114-exon-scaffold_318-1575043694:8513..8664TCONS_00059114-exon-scaffold_318-1575043694:8513..8664Clytia hemisphaericaexon
TCONS_00059114-exon-scaffold_318-1491911889:8880..9064TCONS_00059114-exon-scaffold_318-1491911889:8880..9064Clytia hemisphaericaexon
TCONS_00059114-exon-scaffold_318-1510915933:8880..9064TCONS_00059114-exon-scaffold_318-1510915933:8880..9064Clytia hemisphaericaexon
TCONS_00059114-exon-scaffold_318-1575043694:8880..9064TCONS_00059114-exon-scaffold_318-1575043694:8880..9064Clytia hemisphaericaexon
TCONS_00059114-exon-scaffold_318-1491911889:9474..9559TCONS_00059114-exon-scaffold_318-1491911889:9474..9559Clytia hemisphaericaexon
TCONS_00059114-exon-scaffold_318-1510915933:9474..9559TCONS_00059114-exon-scaffold_318-1510915933:9474..9559Clytia hemisphaericaexon
TCONS_00059114-exon-scaffold_318-1575043694:9474..9559TCONS_00059114-exon-scaffold_318-1575043694:9474..9559Clytia hemisphaericaexon
TCONS_00059114-exon-scaffold_318-1491911889:10664..12931TCONS_00059114-exon-scaffold_318-1491911889:10664..12931Clytia hemisphaericaexon
TCONS_00059114-exon-scaffold_318-1510915933:10664..12931TCONS_00059114-exon-scaffold_318-1510915933:10664..12931Clytia hemisphaericaexon
TCONS_00059114-exon-scaffold_318-1575043694:10664..12931TCONS_00059114-exon-scaffold_318-1575043694:10664..12931Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_318supercontigscaffold_318:2816..12931 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.6404 35.4898 19.3813 18.2649 81.8306 48.5865 33.6576 42.5567 9.3615 3.74056 10.1659 5.96666 3.33668 2.97015 3.66281 2.83888 1.88314 4.68753 6.09513 3.18906 9.00858 10.1402 11.9159 13.8244 10.0037 11.3317 7.86214 4.71976 5.56854 6.48395
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
BLAST of TCONS_00059114 vs. Swiss-Prot (Human)
Match: CAB45 (45 kDa calcium-binding protein OS=Homo sapiens GN=SDF4 PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 4.630e-57
Identity = 122/347 (35.16%), Postives = 197/347 (56.77%), Query Frame = 3
Query:  144 VSIFCCFLYLIGF-----GYSLPILKNATREEIKRKD---LLPPDHIAGAHMEQDGHINKDYHREVFLGKLVKEGVLVWENMAGYKKLIKVFDEVDKSNDRQIDKEEMKNWIHDRIMEHYNAATEESNKIFGKVDHDQNGLVAWPEYKAQIL---GLNPKDYE-----KDNLTVIEDKSGQFEKEIQHWLKADFN-GDKVLDKNEFLAFYHPEHNKKTIELMVKEMLSSFDKDNDHIITLEEFTALPPGEVDPEEA-DEDKLYQEEKAKEFKRDMDLNSDGKVGKEELMQYLDPRNKEHAVKEAEFLIRSSDRNRDGKISEHEMLMSYSIFTGSSLTNFAQVLHDEF 1130
            + +  C L+L+G        + P   ++TRE +  ++   +LPPDH+ G  +E DGH+N+ +H+EVFLGK +       E     +KL+ +F +VD + DR+I  +EM+ WI ++  EH+  A EES   F  VD D +G V+W EYK + L   G + K+        + L V E+     E     W +AD    D +L + EFL+F HPEH++  +  MVKE++   D+D D  +++ EF +LP G V+ ++  D D  + +++ KEF+  +D N DG V  EEL  Y+DP N+ +A+ EA+ +I  +D N++  +   E+L     FTGS L ++A+ +H+EF
Sbjct:   16 IGLAPCCLWLLGAVLLMDASARPANHSSTRERVANREENEILPPDHLNGVKLEMDGHLNRGFHQEVFLGKDLGGFDEDAEPRRSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELESYMDPMNEYNALNEAKQMIAVADENQNHHLEPEEVLKYSEFFTGSKLVDYARSVHEEF 362          
The following BLAST results are available for this feature:
BLAST of TCONS_00059114 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAB454.630e-5735.1645 kDa calcium-binding protein OS=Homo sapiens GN=... [more]
back to top