TCONS_00059111 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059111
Unique NameTCONS_00059111
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length356

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059111 ID=TCONS_00059111|Name=TCONS_00059111|organism=Clytia hemisphaerica|type=transcript|length=356bp
AGGTCGATAATTTACTGCAAGATTTTGAGcacctttgttcttatatatgG
GTATTACGTGAGCTTCTTTCCAATCCTTTGGTAGAGACCCTTCCTTTAAT
GATTTGTTAATTATTACTGCAAGAGGTTCAGAGACGTAGTCAGATAACGA
CTGTAGCATCTTAGGATGTATTCCATCAGGACcaaatgatttattttgat
taagatgttttatttcgatctggatcatttcttttgttatatggATTTCA
TCGATTACAGACTCAGTTCTTTTCTCGAAGTCCGGTAGCTCCCCAGGAGG
CTCTCTTGTGAAAACACTGCAGAATTGACGTTGAAGTATATTCGCCTTTT
CATGGT
Run BLAST on NCBI

protein sequence of TCONS_00059111-protein

>TCONS_00059111-protein ID=TCONS_00059111-protein|Name=TCONS_00059111-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
HEKANILQRQFCSVFTREPPGELPDFEKRTESVIDEIHITKEMIQIEIKH
LNQNKSFGPDGIHPKMLQSLSDYVSEPLAVIINKSLKEGSLPKDWKEAHV
IPIYKNKGAQNLAVNYRP
Run BLAST on NCBI

transcript from alignment at scaffold_317:34739..35094

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059111 ID=TCONS_00059111|Name=TCONS_00059111|organism=Clytia hemisphaerica|type=transcript|length=356bp|location=Sequence derived from alignment at scaffold_317:34739..35094 (Clytia hemisphaerica)
ACCATGAAAAGGCGAATATACTTCAACGTCAATTCTGCAGTGTTTTCACA
AGAGAGCCTCCTGGGGAGCTACCGGACTTCGAGAAAAGAACTGAGTCTGT
AATCGATGAAATccatataacaaaagaaatgatccagatcgaaataaaac
atcttaatcaaaataaatcatttgGTCCTGATGGAATACATCCTAAGATG
CTACAGTCGTTATCTGACTACGTCTCTGAACCTCTTGCAGTAATAATTAA
CAAATCATTAAAGGAAGGGTCTCTACCAAAGGATTGGAAAGAAGCTCACG
TAATACCcatatataagaacaaaggtgCTCAAAATCTTGCAGTAAATTAT
CGACCT

Coding sequence (CDS) from alignment at scaffold_317:34739..35094

>TCONS_00059111 ID=TCONS_00059111|Name=TCONS_00059111|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_317:34739..35094 (Clytia hemisphaerica)
CATGAAAAGGCGAATATACTTCAACGTCAATTCTGCAGTGTTTTCACAAG
AGAGCCTCCTGGGGAGCTACCGGACTTCGAGAAAAGAACTGAGTCTGTAA
TCGATGAAATccatataacaaaagaaatgatccagatcgaaataaaacat
cttaatcaaaataaatcatttgGTCCTGATGGAATACATCCTAAGATGCT
ACAGTCGTTATCTGACTACGTCTCTGAACCTCTTGCAGTAATAATTAACA
AATCATTAAAGGAAGGGTCTCTACCAAAGGATTGGAAAGAAGCTCACGTA
ATACCcatatataagaacaaaggtgCTCAAAATCTTGCAGTAAATTATCG
ACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037230XLOC_037230Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059111-exon-scaffold_317-1491911889:34739..35094TCONS_00059111-exon-scaffold_317-1491911889:34739..35094Clytia hemisphaericaexon
TCONS_00059111-exon-scaffold_317-1510915933:34739..35094TCONS_00059111-exon-scaffold_317-1510915933:34739..35094Clytia hemisphaericaexon
TCONS_00059111-exon-scaffold_317-1575043694:34739..35094TCONS_00059111-exon-scaffold_317-1575043694:34739..35094Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059111-proteinTCONS_00059111-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_317supercontigscaffold_317:34739..35094 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.21966	1.94047	3.67009	2.28818	0.479315	1.57932	0.377856	0.651863	0.242064	0.312442	1.01676	0.378145	0.458558	1.05701	0.227648	0.721589	0.508024	0.93293	0.256555	0.626298	1.3159	0.920197	0.450649	0.335275	0.899938	0.628006	1.55622	1.43089	1.08854	1.74216
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059111 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top