TCONS_00059099 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059099
Unique NameTCONS_00059099
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length806

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059099 ID=TCONS_00059099|Name=TCONS_00059099|organism=Clytia hemisphaerica|type=transcript|length=806bp
GtcataaaaagatttttttgtcaaaagttaccttatatgACAAGGGTTTT
GTGTGCCagatttcatccaaaaagatctactagatcaaaagttaaggggt
gcgGTACAGGAAAaccccctagttttgaaccgctCCTAAAAgactagtat
gaatagggtgaAGCTGTTTTATTCTGTcctctagcctggatatccaggct
ataatAAATATATAGTGCATATTGAANCTGTTTTATCCTGTcctctagcc
tggatatccaggctataatAAATATATAGTGCATATTGAAGGTGCATAAA
ATTCTATATTAGAAACTTCATAATTAGAAATATTCCGTTAATAGACGCCT
CATTTaaaacaccctcttctcacagacccggtgggaccccgtCCTAATGG
AAAAACAAGACGCCTTagcggcgtgaaggcccagcgattGTCTTACGCTT
ATGCGAAATACGCTTGTAAATTTTTTATCTGACTGTGTTTAATTTACGTA
ATTGCGAGGTACATTTTCTTTATGTACTATTTTTCCTGTTACAACTACCT
TATATATAGAGGTTTAAAATTTGAACTAATTGATTAGGCACTTATAAAAG
GGGTTCAATTATTTCGCTAGGTTGGTATACACAGGGAAATAAactaaaat
aatgtttttccTTTGAAGAGATAATTATTTGTATGAGGGTGTTTGGAGTT
TAAATCTCATAGTAGATCTTTAACAAGGGAACTCATAGGTAACCGacaat
taaacaaaaataatactACATACATACAGCTGCATAAACagtcaagaaca
agtgca
Run BLAST on NCBI

transcript from alignment at scaffold_316:130987..131792

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059099 ID=TCONS_00059099|Name=TCONS_00059099|organism=Clytia hemisphaerica|type=transcript|length=806bp|location=Sequence derived from alignment at scaffold_316:130987..131792 (Clytia hemisphaerica)
tgcacttgttcttgactGTTTATGCAGCTGTATGTATGTagtattatttt
tgtttaattgtCGGTTACCTATGAGTTCCCTTGTTAAAGATCTACTATGA
GATTTAAACTCCAAACACCCTCATACAAATAATTATCTCTTCAAAggaaa
aacattattttagtTTATTTCCCTGTGTATACCAACCTAGCGAAATAATT
GAACCCCTTTTATAAGTGCCTAATCAATTAGTTCAAATTTTAAACCTCTA
TATATAAGGTAGTTGTAACAGGAAAAATAGTACATAAAGAAAATGTACCT
CGCAATTACGTAAATTAAACACAGTCAGATAAAAAATTTACAAGCGTATT
TCGCATAAGCGTAAGACaatcgctgggccttcacgccgctAAGGCGTCTT
GTTTTTCCATTAGGacggggtcccaccgggtctgtgagaagagggtgttt
tAAATGAGGCGTCTATTAACGGAATATTTCTAATTATGAAGTTTCTAATA
TAGAATTTTATGCACCTTCAATATGCACTATATATTTattatagcctgga
tatccaggctagaggACAGGATAAAACAGNTTCAATATGCACTATATATT
TattatagcctggatatccaggctagaggACAGAATAAAACAGCTtcacc
ctattcatactagtcTTTTAGGagcggttcaaaactagggggtTTTCCTG
TACcgcaccccttaacttttgatctagtagatctttttggatgaaatctG
GCACACAAAACCCTTGTcatataaggtaacttttgacaaaaaaatctttt
tatgaC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037218XLOC_037218Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059099-exon-scaffold_316-1491911889:130987..131792TCONS_00059099-exon-scaffold_316-1491911889:130987..131792Clytia hemisphaericaexon
TCONS_00059099-exon-scaffold_316-1510915933:130987..131792TCONS_00059099-exon-scaffold_316-1510915933:130987..131792Clytia hemisphaericaexon
TCONS_00059099-exon-scaffold_316-1575043694:130987..131792TCONS_00059099-exon-scaffold_316-1575043694:130987..131792Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_316supercontigscaffold_316:130987..131792 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.297134	0.753355	0.471002	0.394973	0.560982	0.379967	1.06963	2.21734	1.40218	1.11653	1.20414	1.58311	0.441563	0.944032	2.08523	1.05018	2.05212	1.60038	2.21102	1.25599	4.06943	4.20383	2.04412	4.15044	2.42455	3.75826	2.44457	0.608747	1.38514	0.806422
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059099 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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