TCONS_00059049 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059049
Unique NameTCONS_00059049
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2199

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059049 ID=TCONS_00059049|Name=TCONS_00059049|organism=Clytia hemisphaerica|type=transcript|length=2199bp
CTCTAGTCCTAAAAACGGACTCATTAATCTTAAATCTTAAACAGGATATC
TAGGCGGAGCAATTATTTCATCGAATCCAGGCCTTGATACCTGGCTTAGT
AAGCGTGATAACACTTGGAACAAGACAAAGCAGTGCCTCAGGCACAGTGT
TCCTAACAAGCCTCATCATTCTGGGTATCGGTATCTGGCACTCAGTTGAA
ATATATGAGAAGAAAGACTTCTGGGAGAAATACCGTGGCTACGCAGAGGA
AACACCAGCGAAGCCATTGTGCACCGAACAAGGAAGAACGGTGGAAGATA
ATCTGGGCAATTATCATTGCTATTGTGCTAATGATCCGCAAGAATATAAT
GAATCGGGATATGTTGTTCAATTTTGTGACGAATTTCGTGTTGGGGAGGA
CCTCTTTTACGCCATGTTCATTTTCTCCATTGCTGTTTCCGTTTTCTCAT
TATTAAACTCGTTGTTGTCAATCATCGCATGTTGTATATGCAAACCTAAA
GAGCTACCACCATATCAGAAGAACCCACCCCCTGGTTATTATCACTCAGA
TGATCACAAAAATATTTACGCTGTGTCGCGCTAACCCAGCATGAAAAGGG
CTCAGTGAaacaaatatttaattttatctCTACTGTGTTAATATTAAAAT
CTTTGTCTAccataaattttaaattttaagtgaacacgtttttttatatg
agcatttaaaattttgaagccttaggacattcttaactttttaagtttca
gGCCTTAGAATGTacttattttcactttttttttcgacTATTTTTGTCTA
TCACTCAAATTGTGTGTTTTttagtccgcaaagccttaaatttttcttaa
gTTGTGCTGAActttttggccattgaagccttgttttcttatatagtttg
ttcttataaaaaaatgggTATCTAATTAATCTATGTTTGGGGAAAACTGC
TGATTCCATAAAATACTTTATAATACGTAAATTTTTATAACAATGTATAA
TTTATATCACTCAAAGACTAATTTTTCCATGCTTACATGTCATATATTAT
TATCATGTTATCTGTATCCTACTTAAAAAATAATAGAACTTGTCTCAAAA
ACTTTGTATTCTTTTTAGTATTTACAATACATACAcccaaataatatttt
tctgaaaaataaataaaatatttaaaatcaaacatgcttaaaaaatattt
ttatatgaagTTTTATAAGTTTTATATATTTCCATcgaaactttttgaag
aaaagaatgTGGAATagaccatttcacagtcgaaatgaatcatgggtaat
caggaccatcACGCTGTGATAACGACTTTCTGTTGGCCTAAATTTTTGGC
TGTTTCTGCGTCTCACCAACGGGAAGCCGTCATAGAGGCACAATCAATCT
taattacccatgattcatttcgactgtgaaatgatCTATGCAGCCATAGG
TCATTTCATAGTCTAAATGGATTATGGGTAATCAGGAATGATTGCGCCTC
GATAACAGTTCTcccgttggttagacgcaaaaatgttcaaaaatgttcaa
aactttggaccaatagtaagtcgtcattagcgcgcagtggtcctgattac
ccattacgctttgcgactgcgAAATGGCCAATAAACCATCTGCATACAAA
ACTCACTCCAAAGGTGGTACATCTAAATCGTCAACGAAATGTTCGTCATA
CTGATTTTCGCTAATtgcatttttattatttttcattggtGATCCCCCTT
TCCTCTTCTTTCCATTGAAAATAAACGAATTCAAATCTTTAGATTTTTCG
TTTTCCTCTTTTACAATGTTTGTATAATCAATTTTATTCTCGTTCTCTGT
CACTTCAAGTCGTTCAACCGACTTTTGCAAGTCGTCGGTATTCGTTTTAC
CAGATTCACAACCGATAGTTTTCGTTTCCCGAGTTTTAGTTGCATCCGGA
AACTCGTTACTGCCCATTTTCGCGCCTTTAGAATCGGTTTTCGGCCGTCT
AGAACCAGAGCAACGACCTTCAAGTATATATTTTAGCTTAGGCATGTTGA
TAAGTAAGTGTCCGCTGGTTTGCGATCGCTGTGCTGTACTTTTATCTGGA
CTGATTTCCTCGTTGAGAGAGAGTTGAAGTATTTTCCCTTTCATTGTAAC
ACGAACGTAGTGTGGTTGCAAATCAACATCGATCAGTGAGGTATCTgca
Run BLAST on NCBI

transcript from alignment at scaffold_316:168854..174537+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059049 ID=TCONS_00059049|Name=TCONS_00059049|organism=Clytia hemisphaerica|type=transcript|length=5684bp|location=Sequence derived from alignment at scaffold_316:168854..174537+ (Clytia hemisphaerica)
CTCTAGTCCTAAAAACGGACTCATTAATCTTAAATCTTAAACAGGATATC
TAGGCGGAGCAATTATTTCATCGAATCCAGGTATTTTAAACCTTGCGCAA
ACGTCTTCACTGAATTACcatgcgcgtaagaaaattatgatcacctgtta
tcaggttaccttACTATTATCGTAATCGGCTACGgctcgcaaggttgtgg
gttcaaaccccagtcgggtcataccaaagattctcaaaatggtacttgat
gcctctctgcttgatgctcagcaatgaagagaaagatcaagggtaagtgg
agcaatctagGGAGAAggagtggcaccctcccctaaCTTCGGGTAAACAG
CTATCGAacgaggagccttcgggtcgcctccgaccgCGGTCTCAGCCTCA
CTTGCTATTATCGTATAATTTCGTTATTTTCCAGGCCTTGATACCTGGCT
TAGTAAGCGTGATAACACTTGGAACAAGACAAAGCAGTGCCGTAAgtatt
aaattttcataataacgtgagcctgatataggggccGATACTTGCTTATA
TGAAAAAAACATGAATTAGTATCTGGCAccccgcgaagccttaaaacttt
cttaacttgttcttaatattttggccatcgaagcctcattCATGTTCTTA
AATAGTGTCTAGTTAGAttgtttttctcatttcttCCATAGTCAGGCACA
GTGTTCCTAACAAGCCTCATCATTCTGGGTATCGGTATCTGGCACTCAGT
TGAAATATATGAGAAGAAAGACTTCTGGGAGAAATACCGTGGCTACGCAG
AGGAAACACCAGCGAAGCCATTGTGCACCGAACAAGGAAGAACGGTGGAA
GATAATCTGGGCAATTATCATTGCTATTGTGCTAATGATCCGCAAGAATA
TAATGAATCGGGATATGTTGGTAAGTTTatgaaatcaatcaatcatttac
catttaaattttggcggaaagagaatttggtggatttggcgaattaaatt
tttcccaccatccgccaaattaaattcccgccaaatttaacttcaggcct
taaaaaaagttttttcctcACGTAATACCGTTGTTTNCAAATTTAACTTC
AAgccttaaaaaagtttttttcttactTAATACcgttttttggcctaaat
tatccttcatccgccaaattaagttcccgcaaaatttgatttttttagcc
ATCCAGCAAATTagattccctctgaaaaaatattttttctggcGACCCAC
CAagttaaattcccaccaaaatttctccccttaaggtatttatcatggtt
taaattttctgtaatCGTGAACCTATGGAAACCATTGTAGCTTAAATTGG
GTAATGTGATCTAGGCgataagttactgggagctaaaagtaggtgtggcg
ctctaCCTTAGCATTCGATCTTCCAGGtatagcgcaaatagaaaaggggg
atagactccctcactcccggctccgccgacagccaacGGATGAATATATT
TACTTACTTGCTGATCTTCATTTCAGTTCAATTTTGTGACGAATTTCGTG
TTGGGGAGGACCTCTTTTACGCCATGTTCATTTTCTCCATTGCTGTTTCC
GTTTTCTCATTATTAAACTCGTTGTTGTCAATCATCGCATGTTGTATATG
CAAACCTAAAGAGGTAAGGAATTTaactttcccagctggcacacaaggtt
ttttcgacgtttatctaacattcacaacgtccatataatgttagatgaac
gttgaaacaacgttgtgttccACTTCCAGCTGGGTTTAACTCTAGACCAC
AAAtttataaagcctgaagggctagatagagtactttggctgaaaagtgt
gctgggaaaagctttaaaacactCCATCTAGCTCTTTGGGCTTCACAGAA
ATCTGTGCTCTAGACAGGAGGTCAAAATTAGAGCTAGGGTTTCATTTTCG
GACAGAATTTCAATTTTCGGATAAATTAGAAATTAGAAAATAACCTTTTA
AAGTTGTCATCATACAATGGGCTGACCGAAAGAGGTAAGAAATGAGTGCT
ATTAGAATGAACTAAACATACGAGGTGTTTAATCATCGGACAAAgccaat
attttgaaataattcgggaaaaaatttcatgaatttaTCTACaagtttcc
aaaaatgaaataaaagatTTCTGAGATTCGAGAGTAGCTTCAATATCAAT
CAGTCTCTAATATAGAAAAGTTTTATTAATCTTCGTTAAGGCCGGTTTAC
ACttgcgcgctgcgatcgcaattttccgagcaaagcttccacgctattgg
tcaaaagaaaaatgaaaacattccaTTGGTGCGATCTGACGTAATGCTTT
TTTCGAGCACgcactacatttttatgacgtaatcttttttccaagcaaaa
aggattgaagccaaaaggtgcaaTCTGAGCGCTAAAGTGAAGACCGGCCT
TTAGAACAGATTCAAATGTGTTGAATGCGACTTACCAAAGCAAATGACTG
TTTCTCTCCAATTTGATTCACATGACGTTACTTTCTTAAGTGAGGGTAAC
TTTCATCATCCCCCACTAAACAAACTATCTGTAATTTTCAtattaaacaa
gtgatacttttatggacctacctggttatgcattaaACAcatatatataa
ttgatatctacgtgagcatgaccgttaaacaatcattcagaacacaaata
gtgacgatctattaaaattagttgtttatttcttataaaaaaaaccgttt
taaagaaaacaaaatgtcatactcttgaaatattctttcatattcaagac
tttgtgagcaaaatgtatctcatcaaaaaactgagtaatttggctaagaa
tattgatgtatgcttataaatagtgattctaagatgcgttttttgagctg
aaaattcttttttttacagatatctgcttgagccatcttttacctacttt
cattaaaaaaatcagaaaaaattaatgatccaattttcacAAAATCGAAA
AAGCCCGTTTTTTGGACCGAAATTGCCCAaacaaaatcgggctccgtcac
acattttgcccaccaccattttgcacctttgtacaaaaaatcgaaagatt
cctatgattcaatcctgagaaaagttggtaaaagacgaacggacgaacga
acacaggttaatttatagtgacctccaccccaccggggtaggtccaacta
GAAGGAAAGCAAGTCATGCTTGTTTGCTTGACTTTTTAGTACCAGAAAAT
GTTGTGGTCTTGAGGTGATGAAAGTTATCCCAACCTTAATGAACGTAATC
CTAATGGACGATCTATTATTTATTATTCTTTTGAACTTTgatctaaaaac
aaaaagaaaacattgttaGACAGTTTAGAAACTATACATGAGATACCCGA
GGGGGCGAGGTACTAGGGTTGACGGGTGAGGGGTATGTATGGACGgaacc
tccgaaaaccgacccttagaaagactgacttttgctgaaaaggttgTCCT
TAGAGAGACAAAGTTTCTTAAAGTTGAGTGACTCTTAGAGAGACATCttc
acaaaaatttcttcgataTTCAAAAGAATTCTCCAATACTTTcgaaaaaa
tgttcttactttcTTGACTTTTCACTCTTCTTTGATCCGAGTTTGTAAAA
AACTACCCTTAGCGAGACTTTGGAACGTGAAAAAACCGctccttaccgtc
cgcacatacccagcactaAGTATCCCCCCCCCCCGACAAGATTCCAATTT
CGAGTTTTTGAGCAAAGACTCTCACAATGAGAGTGACGCCCCTCATACAA
CTTAACATCATCAGATTCCAATTTCGAGTTTTTGAGCAAAGACTCTCACA
ATGAGAGTGACGCCCCTCATACAACTTAACATCATCAGATTCCAATTTCG
AGTTTTTGAGCAAAGACTCTCACAATGAGAGTGACGCCCCTCATACAACT
TAACATCATCAGATTCCAATTTCGAGTTTTTATTTCAGCTACCACCATAT
CAGAAGAACCCACCCCCTGGTTATTATCACTCAGATGATCACAAAAATAT
TTACGCTGTGTCGCGCTAACCCAGCATGAAAAGGGCTCAGTGAaacaaat
atttaattttatctCTACTGTGTTAATATTAAAATCTTTGTCTAccataa
attttaaattttaagtgaacacgtttttttatatgagcatttaaaatttt
gaagccttaggacattcttaactttttaagtttcagGCCTTAGAATGTac
ttattttcactttttttttcgacTATTTTTGTCTATCACTCAAATTGTGT
GTTTTttagtccgcaaagccttaaatttttcttaagTTGTGCTGAActtt
ttggccattgaagccttgttttcttatatagtttgttcttataaaaaaat
gggTATCTAATTAATCTATGTTTGGGGAAAACTGCTGATTCCATAAAATA
CTTTATAATACGTAAATTTTTATAACAATGTATAATTTATATCACTCAAA
GACTAATTTTTCCATGCTTACATGTCATATATTATTATCATGTTATCTGT
ATCCTACTTAAAAAATAATAGAACTTGTCTCAAAAACTTTGTATTCTTTT
TAGTATTTACAATACATACAcccaaataatatttttctgaaaaataaata
aaatatttaaaatcaaacatgcttaaaaaatatttttatatgaagTTTTA
TAAGTTTTATATATTTCCATcgaaactttttgaagaaaagaatgTGGAAT
agaccatttcacagtcgaaatgaatcatgggtaatcaggaccatcACGCT
GTGATAACGACTTTCTGTTGGCCTAAATTTTTGGCTGTTTCTGCGTCTCA
CCAACGGGAAGCCGTCATAGAGGCACAATCAATCTtaattacccatgatt
catttcgactgtgaaatgatCTATGCAGCCATAGGTCATTTCATAGTCTA
AATGGATTATGGGTAATCAGGAATGATTGCGCCTCGATAACAGTTCTccc
gttggttagacgcaaaaatgttcaaaaatgttcaaaactttggaccaata
gtaagtcgtcattagcgcgcagtggtcctgattacccattacgctttgcg
actgcgAAATGGCCAATAAACCATCTGCATACAAAACTCACTCCAAAGGT
GGTACATCTAAATCGTCAACGAAATGTTCGTCATACTGATTTTCGCTAAT
tgcatttttattatttttcattggtGATCCCCCTTTCCTCTTCTTTCCAT
TGAAAATAAACGAATTCAAATCTTTAGATTTTTCGTTTTCCTCTTTTACA
ATGTTTGTATAATCAATTTTATTCTCGTTCTCTGTCACTTCAAGTCGTTC
AACCGACTTTTGCAAGTCGTCGGTATTCGTTTTACCAGATTCACAACCGA
TAGTTTTCGTTTCCCGAGTTTTAGTTGCATCCGGAAACTCGTTACTGCCC
ATTTTCGCGCCTTTAGAATCGGTTTTCGGCCGTCTAGAACCAGAGCAACG
ACCTTCAAGTATATATTTTAGCTTAGGCATGTTGATAAGTAAGTGTCCGC
TGGTTTGCGATCGCTGTGCTGTACTTTTATCTGGACTGATTTCCTCGTTG
AGAGAGAGTTGAAGTATTTTCCCTTTCATTGTAACACGAACGTAGTGTGG
TTGCAAATCAACATCGATCAGTGAGGTATCTgca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037192XLOC_037192Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059049-exon-scaffold_316-1491911889:168854..168933TCONS_00059049-exon-scaffold_316-1491911889:168854..168933Clytia hemisphaericaexon
TCONS_00059049-exon-scaffold_316-1510915933:168854..168933TCONS_00059049-exon-scaffold_316-1510915933:168854..168933Clytia hemisphaericaexon
TCONS_00059049-exon-scaffold_316-1575043694:168854..168933TCONS_00059049-exon-scaffold_316-1575043694:168854..168933Clytia hemisphaericaexon
TCONS_00059049-exon-scaffold_316-1491911889:169288..169344TCONS_00059049-exon-scaffold_316-1491911889:169288..169344Clytia hemisphaericaexon
TCONS_00059049-exon-scaffold_316-1510915933:169288..169344TCONS_00059049-exon-scaffold_316-1510915933:169288..169344Clytia hemisphaericaexon
TCONS_00059049-exon-scaffold_316-1575043694:169288..169344TCONS_00059049-exon-scaffold_316-1575043694:169288..169344Clytia hemisphaericaexon
TCONS_00059049-exon-scaffold_316-1491911889:169545..169773TCONS_00059049-exon-scaffold_316-1491911889:169545..169773Clytia hemisphaericaexon
TCONS_00059049-exon-scaffold_316-1510915933:169545..169773TCONS_00059049-exon-scaffold_316-1510915933:169545..169773Clytia hemisphaericaexon
TCONS_00059049-exon-scaffold_316-1575043694:169545..169773TCONS_00059049-exon-scaffold_316-1575043694:169545..169773Clytia hemisphaericaexon
TCONS_00059049-exon-scaffold_316-1491911889:170380..170516TCONS_00059049-exon-scaffold_316-1491911889:170380..170516Clytia hemisphaericaexon
TCONS_00059049-exon-scaffold_316-1510915933:170380..170516TCONS_00059049-exon-scaffold_316-1510915933:170380..170516Clytia hemisphaericaexon
TCONS_00059049-exon-scaffold_316-1575043694:170380..170516TCONS_00059049-exon-scaffold_316-1575043694:170380..170516Clytia hemisphaericaexon
TCONS_00059049-exon-scaffold_316-1491911889:172842..174537TCONS_00059049-exon-scaffold_316-1491911889:172842..174537Clytia hemisphaericaexon
TCONS_00059049-exon-scaffold_316-1510915933:172842..174537TCONS_00059049-exon-scaffold_316-1510915933:172842..174537Clytia hemisphaericaexon
TCONS_00059049-exon-scaffold_316-1575043694:172842..174537TCONS_00059049-exon-scaffold_316-1575043694:172842..174537Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_316supercontigscaffold_316:168854..174537 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0616919	0.0305055	0	0.0340922	0	0	0	0	0	0	0	0.0710142	0.110797	0.0612578	0.0660118	0	2.20903	0	0	0.0757121	1.95001	1.89889	0.0380687	0	0.035295	0	0.00143245	0	0	0
Blast
[Close]
BLAST of TCONS_00059049 vs. Swiss-Prot (Human)
Match: TILB (Protein tilB homolog OS=Homo sapiens GN=LRRC6 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.160e-18
Identity = 66/180 (36.67%), Postives = 91/180 (50.56%), Query Frame = -2 
Query: 1659 DTSLIDVDLQPHYVRVTMKGKILQLSLNEEISPDKSTAQRSQTSGHLLINMPKLKYILEGRCSGSRRPKTDSKGAKMGSNEFPDATKTRETKTIGCESGKTNTDDLQKSVERLEVTENENKI-DYTNIVKEENEKSKDLNSFIFNGKKRKGGSPMKNNKNAISENQYDEHFVDDLDVPPL 2195
            DTSLIDVD+QP YVRV +KGK  QL L  E+ PD S+A+RSQT+GHL+I MPK+  ++ G   G R      K  K  S+   + T TR                  K +E+LEV  +++   D TNIV+E                  K  +P +  +  I  ++ D  F D+ +VPPL
Sbjct:  328 DTSLIDVDVQPTYVRVMIKGKPFQLVLPAEVKPDSSSAKRSQTTGHLVICMPKVGEVITG---GQRA----FKSMKTTSDRSREQTNTR-----------------SKHMEKLEVDPSKHSFPDVTNIVQE------------------KKHTPRRRPEPKIIPSEEDPTFEDNPEVPPL 465
The following BLAST results are available for this feature:
BLAST of TCONS_00059049 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TILB4.160e-1836.67Protein tilB homolog OS=Homo sapiens GN=LRRC6 PE=1... [more]
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