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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059047 ID=TCONS_00059047|Name=TCONS_00059047|organism=Clytia hemisphaerica|type=transcript|length=1670bp
ATAGAAAACGAATATTACttgaaaaatttgttaaaaaacaaaatggcttc
cCTAACATTGAAAGAGAGTTCATTGACGATGACTTTATCTTTGACAATCC
TGTTCGGTATATTTGTTTCTTCTAATTTGACGGCAGCCGAAACATTTTCT
TGTCACCGTGGAAACTATGCTAATGGAACAGACAATGCTCAGCCAGACAA
AAACTGCACGGGTACTTCATTGTGTTATATGGAGCGCAAAGAAAATGGTC
TGGAGCTCCGTGGCTGCTTACCACACCCTGAAGCACCAATCCAAGTGAAG
TGTAACCAAACAGAAAATGGTGTGTTTGCATGTTGTTGTCGGGAATCGTT
GTGCAACACGTTAGAGTTCCGTAGTGATTGCTATGAGAGATTCAATGCAA
CTGACCCGTATGATacaacgacaacaacaacaacgacaactACAACGACT
ACAACCACGACAACTTCGACGACCACGACAACTACAGATCCATCAACTAC
AACAACGAGTACTACCACAACAACAAACGCTCCGTCCACAACAACACCTA
GCAAAAGCTCTGTCTTGATGTCATCTTGTTTTTTGGTCATGATGCCACTT
ATTTTGGGTGTTTTTACTGTGTATTGAGAAATTGAGGAAATTGTATGATT
AATTCTATCCACGACGTAAAGACTATTTAAAAACCGTTTTGGCGCagttt
cataagaacaaactagataagaacattttgaagcTTTGATGACCCTAAAA
CACCTATtatcttaggaaaatggacaaaaatgctctcaaaatggtaaaaa
taagaatatttttaggcttaaaactcaaacattaagaacatccgaaagct
ttaAAAATGTTCGATGTTCTTACACACACGTGCACTTTACTGTAGACTAA
CTTTACTGCCATAGCATCTTTGTCCTCTGAGGACAGATCTTGAAAGTAAA
ATAGGTTTGCAAAATTACGGGTATATCCGAGCGAAACATCAACCTTTATC
GAAACTAAATTTGAATAtcatattggttgttgaaatacacattatttgcg
cttttttgatgcaagtaaccattcaaaaagtatttatttgacataatttt
agttttgattagaaatatttccattgggatttaatttcgcggattttcgc
ggatgacacccaaatccgcgaaatccgcgaaatttaatccccgcgaaagt
ttatcccattaaagtattatcTACATTTCTTCTCCTTCGTGTATTTAAGT
TTAAATTTAACATTGTGTTTTGTTATTTTGCATCCATTTTGTAGCCATTA
GTAATGAAATTATTGAGCTCTAAACCAATACTTTCACCTCAAAAATCAAA
TCGGGATGAATTCTTTTCGCCAGGCCGATTTCTTCAGTAGATCCCACCGG
ATCTGTGATGAGTGATGATGTATTTATTACATATAACTTATACTTTTTAT
ACTTAACTTTACAAAGGGACATGCAGAAATCCCAATTAATATAAAAGATT
ATTTTGCAAATCATGGCTAAAATGGtattaattttttcatcaagattttt
tttaatgccCTTTTAACAGATATTCTTAATTCTATAGAAAATTAGATGAT
GTTTGTATAGAagtaaatttgtttgttttgattaaaaatgTGTGTatcaa
tagaaaaaaaaactttccac Run BLAST on NCBI protein sequence of TCONS_00059047-protein >TCONS_00059047-protein ID=TCONS_00059047-protein|Name=TCONS_00059047-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
IENEYYLKNLLKNKMASLTLKESSLTMTLSLTILFGIFVSSNLTAAETFS
CHRGNYANGTDNAQPDKNCTGTSLCYMERKENGLELRGCLPHPEAPIQVK
CNQTENGVFACCCRESLCNTLEFRSDCYERFNATDPYDTTTTTTTTTTTT
TTTTTSTTTTTTDPSTTTTSTTTTTNAPSTTTPSKSSVLMSSCFLVMMPL
ILGVFTVY Run BLAST on NCBI transcript from alignment at scaffold_316:142593..145371+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059047 ID=TCONS_00059047|Name=TCONS_00059047|organism=Clytia hemisphaerica|type=transcript|length=2779bp|location=Sequence derived from alignment at scaffold_316:142593..145371+ (Clytia hemisphaerica)
ATAGAAAACGAATATTACttgaaaaatttgttaaaaaacaaaatggcttc
cCTAACATTGAAAGAGAGTTCATTGACGATGACTTTATCTTTGACAATCC
TGTTCGGTATATTTGTTTCTTCTAATTTGACGGCAGCCGAAACATTTTCT
TGTCACCGTGGAAACTATGCTAATGGAACAGACAATGCTCAGCCAGACAA
AAACTGCAgtaagttattttttatttatagcataggtaacacgaacaaat
agtacaacACACAATGTGGATATCCCACAATGTTCCTAACCTCCCGCAGT
ACATGtcttttgtaagaacatccaaaagtttcGAAGTCTTTAGGGTGTTT
TCGCGCAATATAGCAAAACaactcgatgcatttacaccgctattgagtaa
tGCTGCCATTAGGgtggtaccacttttcaaaaaactccaatcaaaaattt
tgcttggccgggattgagaaacttggtccagggtatataaaggtcagtgc
tagGATCCACATGATCCAGATGCAAGCTCAAACGTCAATTATATGATTTA
TAGCAGGAATTTGTCCTGAATTGTATGAAATATACCCAAAACCTTTTGAT
GCTAATAAATTGCGATTATGTAAAACTATCCGACGATCCCTGCCATCATT
CGTTCCCACTCTTCTACTAACGATAGACCTATTTTATAAGTTACTTCATg
aacatcacttacctcgtATTTGAACTATTTCCATGGTGATTAATTCCAcg
agcggattttattaaaactgtttcctattcataaaataatcatttaatgt
ctcaagagacataatcaccatggtaattgctAGAATACGAGATAAGTgat
ttcatgacgtaatttatgaaaaggtctatctatTATCTCTGGCTCGAGCC
CGAGCTTGCAACAAAATTCAAACCTTGTCCAAATAAATCTCATTACTTTC
CTAGCGGGTACTTCATTGTGTTATATGGAGCGCAAAGAAAATGGTCTGGA
GCTCCGTGGCTGCTTACCACACCCTGAAGCACCAATCCAAGTGAAGTGTA
ACCAAACAGAAAATGGTGTGTTTGCATGTTGTTGTCGGGAATCGTTGTGC
AACACGTTAGAGTTCCGTAGTGATTGCTATGAGAGATTCAATGCAACTGA
CCCGTATGATacaacgacaacaacaacaacgacaactACAACGACTACAA
CCACGACAACTTCGACGACCACGACAACTACAGGTTAGAATTTTTCGCAA
AGTATACCCCTCCCATAAATCGGTTTTGTTTTCAACCTCAGCTTATCATT
GGCTAACACTCGCCATATAACTTTTCATGATCAGGTACTTAAAGCTTGGG
TACACAGGAGGTTTgccttatttttttattctatagCTTTGCCAAAAGTA
AGTCCATTATTCGATAAGTATATTCAAAAGGCATTGCCCCTATCCTTCGG
CTACGAAATTGAGTTTTTTTGCTAGGTAGGAATTTTTCAGGTCTATATTA
AGGACCTTTCCAGGTCTTTTACACCGTTGTAGACTTTCGGTAATGAAACG
GGAGTGTGTTTACATATTCTAAGAGAAAAAATCATTTGCAATTTAGATCC
ATCAACTACAACAACGAGTACTACCACAACAACAAACGCTCCGTCCACAA
CAACACCTAGCAAAAGCTCTGTCTTGATGTCATCTTGTTTTTTGGTCATG
ATGCCACTTATTTTGGGTGTTTTTACTGTGTATTGAGAAATTGAGGAAAT
TGTATGATTAATTCTATCCACGACGTAAAGACTATTTAAAAACCGTTTTG
GCGCagtttcataagaacaaactagataagaacattttgaagcTTTGATG
ACCCTAAAACACCTATtatcttaggaaaatggacaaaaatgctctcaaaa
tggtaaaaataagaatatttttaggcttaaaactcaaacattaagaacat
ccgaaagctttaAAAATGTTCGATGTTCTTACACACACGTGCACTTTACT
GTAGACTAACTTTACTGCCATAGCATCTTTGTCCTCTGAGGACAGATCTT
GAAAGTAAAATAGGTTTGCAAAATTACGGGTATATCCGAGCGAAACATCA
ACCTTTATCGAAACTAAATTTGAATAtcatattggttgttgaaatacaca
ttatttgcgcttttttgatgcaagtaaccattcaaaaagtatttatttga
cataattttagttttgattagaaatatttccattgggatttaatttcgcg
gattttcgcggatgacacccaaatccgcgaaatccgcgaaatttaatccc
cgcgaaagtttatcccattaaagtattatcTACATTTCTTCTCCTTCGTG
TATTTAAGTTTAAATTTAACATTGTGTTTTGTTATTTTGCATCCATTTTG
TAGCCATTAGTAATGAAATTATTGAGCTCTAAACCAATACTTTCACCTCA
AAAATCAAATCGGGATGAATTCTTTTCGCCAGGCCGATTTCTTCAGTAGA
TCCCACCGGATCTGTGATGAGTGATGATGTATTTATTACATATAACTTAT
ACTTTTTATACTTAACTTTACAAAGGGACATGCAGAAATCCCAATTAATA
TAAAAGATTATTTTGCAAATCATGGCTAAAATGGtattaattttttcatc
aagattttttttaatgccCTTTTAACAGATATTCTTAATTCTATAGAAAA
TTAGATGATGTTTGTATAGAagtaaatttgtttgttttgattaaaaatgT
GTGTatcaatagaaaaaaaaactttccac Coding sequence (CDS) from alignment at scaffold_316:142593..145371+ >TCONS_00059047 ID=TCONS_00059047|Name=TCONS_00059047|organism=Clytia hemisphaerica|type=CDS|length=1881bp|location=Sequence derived from alignment at scaffold_316:142593..145371+ (Clytia hemisphaerica)
ATAGAAAACGAATATTACttgaaaaatttgttaaaaaacaaaatggcttc
cCTAACATTGAAAGAGAGTTCATTGACGATGACTTTATCTTTGACAATCC
TGTTCGGTATATTTGTTTCTTCTAATTTGACGGCAGCCGAAACATTTTCT
TGTCACCGTGGAAACTATGCTAATGGAACAGACAATGCTCAGCCAGACAA
AAACTGCACGGGTACTTCATTGTGTTATATGGAGCGCAAAGAAAATGGTC
TGGAGCTCCGTGGCTGCTTACCACACCCTGAAGCACCAATCCAAGTGAAG
TGTAACCAAACAGAAAATGGTGTGTTTGCATGTTGTTGTCGGGAATCGTT
GTGCAACACGTTAGAGTTCCGTAGTGATTGCTATGAGAGATTCAATGCAA
CTGACCCGTATGATacaacgacaacaacaacaacgacaactACAACGACT
ACAACCACGACAACTTCGACGACCACGACAACTACAGATCCATCAACTAC
AACAACGAGTACTACCACAACAACAAACGCTCCGTCCACAACAACACCTA
GCAAAAGCTCTGTCTTGATGTCATCTTGTTTTTTGGTCATGATGCCACTT
ATTTTGGGTGTTTTTACTGTGTATTGAATAGAAAACGAATATTACttgaa
aaatttgttaaaaaacaaaatggcttccCTAACATTGAAAGAGAGTTCAT
TGACGATGACTTTATCTTTGACAATCCTGTTCGGTATATTTGTTTCTTCT
AATTTGACGGCAGCCGAAACATTTTCTTGTCACCGTGGAAACTATGCTAA
TGGAACAGACAATGCTCAGCCAGACAAAAACTGCACGGGTACTTCATTGT
GTTATATGGAGCGCAAAGAAAATGGTCTGGAGCTCCGTGGCTGCTTACCA
CACCCTGAAGCACCAATCCAAGTGAAGTGTAACCAAACAGAAAATGGTGT
GTTTGCATGTTGTTGTCGGGAATCGTTGTGCAACACGTTAGAGTTCCGTA
GTGATTGCTATGAGAGATTCAATGCAACTGACCCGTATGATacaacgaca
acaacaacaacgacaactACAACGACTACAACCACGACAACTTCGACGAC
CACGACAACTACAGATCCATCAACTACAACAACGAGTACTACCACAACAA
CAAACGCTCCGTCCACAACAACACCTAGCAAAAGCTCTGTCTTGATGTCA
TCTTGTTTTTTGGTCATGATGCCACTTATTTTGGGTGTTTTTACTGTGTA
TTGAATAGAAAACGAATATTACttgaaaaatttgttaaaaaacaaaatgg
cttccCTAACATTGAAAGAGAGTTCATTGACGATGACTTTATCTTTGACA
ATCCTGTTCGGTATATTTGTTTCTTCTAATTTGACGGCAGCCGAAACATT
TTCTTGTCACCGTGGAAACTATGCTAATGGAACAGACAATGCTCAGCCAG
ACAAAAACTGCACGGGTACTTCATTGTGTTATATGGAGCGCAAAGAAAAT
GGTCTGGAGCTCCGTGGCTGCTTACCACACCCTGAAGCACCAATCCAAGT
GAAGTGTAACCAAACAGAAAATGGTGTGTTTGCATGTTGTTGTCGGGAAT
CGTTGTGCAACACGTTAGAGTTCCGTAGTGATTGCTATGAGAGATTCAAT
GCAACTGACCCGTATGATacaacgacaacaacaacaacgacaactACAAC
GACTACAACCACGACAACTTCGACGACCACGACAACTACAGATCCATCAA
CTACAACAACGAGTACTACCACAACAACAAACGCTCCGTCCACAACAACA
CCTAGCAAAAGCTCTGTCTTGATGTCATCTTGTTTTTTGGTCATGATGCC
ACTTATTTTGGGTGTTTTTACTGTGTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059047-exon-scaffold_316-1491911889:142593..142800 | TCONS_00059047-exon-scaffold_316-1491911889:142593..142800 | Clytia hemisphaerica | exon |
| TCONS_00059047-exon-scaffold_316-1510915933:142593..142800 | TCONS_00059047-exon-scaffold_316-1510915933:142593..142800 | Clytia hemisphaerica | exon |
| TCONS_00059047-exon-scaffold_316-1575043694:142593..142800 | TCONS_00059047-exon-scaffold_316-1575043694:142593..142800 | Clytia hemisphaerica | exon |
| TCONS_00059047-exon-scaffold_316-1491911889:143547..143825 | TCONS_00059047-exon-scaffold_316-1491911889:143547..143825 | Clytia hemisphaerica | exon |
| TCONS_00059047-exon-scaffold_316-1510915933:143547..143825 | TCONS_00059047-exon-scaffold_316-1510915933:143547..143825 | Clytia hemisphaerica | exon |
| TCONS_00059047-exon-scaffold_316-1575043694:143547..143825 | TCONS_00059047-exon-scaffold_316-1575043694:143547..143825 | Clytia hemisphaerica | exon |
| TCONS_00059047-exon-scaffold_316-1491911889:144189..145371 | TCONS_00059047-exon-scaffold_316-1491911889:144189..145371 | Clytia hemisphaerica | exon |
| TCONS_00059047-exon-scaffold_316-1510915933:144189..145371 | TCONS_00059047-exon-scaffold_316-1510915933:144189..145371 | Clytia hemisphaerica | exon |
| TCONS_00059047-exon-scaffold_316-1575043694:144189..145371 | TCONS_00059047-exon-scaffold_316-1575043694:144189..145371 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_316 | supercontig | scaffold_316:142593..145371 + |
Blast
The following BLAST results are available for this feature:
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