|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059046 ID=TCONS_00059046|Name=TCONS_00059046|organism=Clytia hemisphaerica|type=transcript|length=1841bp
aaaaaattcagattaaGATAAATCATTTTATCATCGCTCCGTCATTCCGA
TATCAAACAGATTTTGGAAGGAAGGCTAAGCTCTTGAAGAAAAATGTTTA
TAAGTTGGTAAAAATTACGAGATTGTAGAGTTATGAAGTCTTATCTTTTG
CTAGTAGCCTCGATTCTTACTGCATCAATCTACTCTCAACAAATACTAAG
GCTGCCACAATGTGATAAATTTGGAGCTACATTCAAAGTCTCTAAACGCA
AGATCATAGGTTTAGACACGGAAGGTTTGATAATAGAACATTCTGGCGTT
TATCAAAAGGAAAGATGCAGCTCATTATGTATTGAGGAAGAAACATGCGA
GTCGGCATTTTATCACATTGAGCTACAGAAGTGTAAACTTTATTCGAAAA
CCTTTGATGAAGAAAGTGAGCTTGTGGAAACAGACGGGGTGCTGTATATG
ACAAGTGATGATTCGTTGGGCGATGATCTGCACGGACACGCATGCGTGAA
CAATAAGTGCAACATTACCGGTACCGATTTTTGTGAGGAAACATGTGACC
AACCAGATGGGTATTATTGTCATTGCAGATACGATCATGATGGTACTTTT
TGTGATGAAAGATTGATATGTGCTTTTCAGTCATGGGAACTGGATACTGA
AAAATGGAATCAATTTAATAGTGTGACAGCCACAAGCCTTACTATAGACG
AATGCCAAGAAAGATGCTTCGAAGAATATAAGAATGGACTGGTCACGCAT
ATTTTCTACAAGAACGAAACTCATGCTCTTACAACGTTCCCGACGCGATG
TCTTTGCTATAATGGGGTTGTTTCTGGAGGGAGTACCCGAGAGGGTCATT
TTGGTTGTGAAATGactcttctttgaaaaaaaactagTACAGACCCGATA
CAATATTTTCAGCCAGTCGTGGTAAAAATAACGAACTTAAACGAATTTCA
TTAGTTTCAAGTTTGGAAATTTAGTGGGGGTTAAAAGAAATAGCACAGta
atttgcagtgaggatttgtttatttcttcatttttaacaaaaattggagt
acaattttcGACTGGGGACGATAATTTGGCTTATTGGCCCAGCGATAGCA
tatgggcctttcattagcccTTTGCTGTTACGCTAGGGTCTCCCCTGTGT
TCGCGCATCACACGGGTTTTATGGTTTACAGGCTAAAAGCTTCCATATAT
TCAACATGAACCCGACTGGATGTATTCGTGTTTAAATGAATTATATAATA
TGTTATATTATACTACGGTGTTTGCAAATTGTATATTATACTACTGCATT
ATACATTATGTTGTTCTATTATTATTCTGTTATTATGTAATGTTAGATAT
AATACAGTCAGGAGTACATTCAACATGAACCCGACTGGATGTATTTGACC
GGAAAGGATAACCCAAGACAGGAATTCCAATTTACTTCCAAGGAAGTTAA
TCAAAAGGGAAAACGTAAGATACAAACCTCCGAAATGTGATCCTTATCTC
TGATCccgtctttctcttttctgactgtctgagtttctgagtttctcatt
tctgactgagttttcatacctgtcaatcatttgaccattaatttcgacca
gtctaattttcggaccgagtgggattcgaaccaccaccaaagaaagacct
tcggattcggaagccagcgctatatcccttgagccatcgccgcacagcaa
aatcacgcaattcataacattttataccaaactggcaaaatacgggggta
atattattataatatgggtaaaagtaccccttttttaaacctgactgaaa
ttcgagccgttactagcaaccctgcggggcccaaggcgccg Run BLAST on NCBI protein sequence of TCONS_00059046-protein >TCONS_00059046-protein ID=TCONS_00059046-protein|Name=TCONS_00059046-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
MKSYLLLVASILTASIYSQQILRLPQCDKFGATFKVSKRKIIGLDTEGLI
IEHSGVYQKERCSSLCIEEETCESAFYHIELQKCKLYSKTFDEESELVET
DGVLYMTSDDSLGDDLHGHACVNNKCNITGTDFCEETCDQPDGYYCHCRY
DHDGTFCDERLICAFQSWELDTEKWNQFNSVTATSLTIDECQERCFEEYK
NGLVTHIFYKNETHALTTFPTRCLCYNGVVSGGSTREGHFGCEMTLL Run BLAST on NCBI transcript from alignment at scaffold_316:124387..128562+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059046 ID=TCONS_00059046|Name=TCONS_00059046|organism=Clytia hemisphaerica|type=transcript|length=4176bp|location=Sequence derived from alignment at scaffold_316:124387..128562+ (Clytia hemisphaerica)
aaaaaattcagattaaGATAAATCATTTTATCATCGCTCCGTCATTCCGA
TATCAAACAGATTTTGGAAGGAAGGCTAAGCTCTTGAAGAAAAATGTTTA
TAAGTTGGTAAAAATTACGAGATTGTAGAGTTATGAAGTCTTATCTTTTG
CTAGTAGCCTCGATTCTTACTGCATCAATCTACTCTCAACAAATACTAAG
GCTGCCACAATGTGATAAATTTGGAGCTACATTCAAAGTCTCTAAACGCA
AGATCATAGGTTTAGACACGGAAGGTTTGATAATAGAACATTCTGGCGTT
TATCAAAAGGAAAGATGCAGCTCATTATGTATTGAGGAAGAAACATGCGA
GTCGGCATTTTATCACATTGAGCTACAGAAGTGTAAACTTTATTCGAAAA
CCTTTGATGAAGAAAGTGAGCTTGTGGAAACAGACGGGGTGCTGTATATG
ACAAGTGATGATTCGTTGGGCGATGATCTGGTAACTTCTTTTATTTccat
tcaaaatttatcaatattGTTAAGTACGCGCTTTCCATTTAAGTAGTCGC
TTGGCACACCAGTCAGGCTGGAGCGGTATTACTTGGGAAAGGtaagcgta
ggagttaggtaagcgtatgaaatttttttgtcggcggcaagggctgaaag
ctgTTAATCAGCAGCTGTTAATCAGTGACAAGGGCTGAACactgttaatc
agcagcctctcaccaagtTTTGCTcattctcctacgcagctcctattcta
gcaaacgcccgctgCCTTAaagttcccgccctctgacatgattaattgac
agactagtttgctagtctaagTCACTTTTTGCTTTCGTTTTCAGACCAAA
GATAAAgcagttttgaattttaatcaGCTTTAATCAAGCACTTTAGATTC
AATTCGCGCCAACCCTTCAGAGCAGAACTTAGTGCTCTCTAAAGTGATAA
TCTATCAGTCTGAAAAAAGGTCCAAGGGTTggagaaaatctaaaatttaa
aatcaaacgaTTTTAAATGCTTTAACTTGCTTCTGGAGTgcagagtttta
actctgagttttataTATTTGACTTATAAGATTTAGGACTTTAGGATCtt
aggatctaaaagctcaaaaatattccaataaAGGTGGGAATATAGCTTGG
AAGCTACTTAATCcctccaaaattgaaatattcaacCAAATAAACTGGAA
GTGAAGAGATAGATTTTCTCGCCCGATCTTTAGATTTGTTTTTAACGATA
AAATATTCCAATGTCTTTACTAATGAGTCTTATTTAAGTCACTTATTCAA
GAGTCTTATTTTCTCCCGGGTAAACGATAAATTTTTCCGGCACAAGCCAC
AAAAACATTCATCATTAACCAGTACAAATATCTTATTCATTGACCGGGCT
ACTGGCATAATTAtccaagctggcacacaacgttgtttcaacgttctttc
aacgttcaactaacattatatggacgttgtgaacattagataaacgtcga
aacaacgttgtgtgccagctgggatataGTAGTCcattctttgccacgga
aagtcatgtgacatctttttcaaccaataagatttattaattaatttcga
gggtaaaacaaacactatggtttaactcactaaaatattatgtttattga
aaacacataattaatctttagtaagtgttctgttgcaccccagttctgac
gtcatgccgtggcGAAGAATACGCTGAAATTTCGTAAGTGTTCCCAAATT
TAGAGTCAGAAATTTCGCTGCAGCTCATTTTTCATCCACCAACTTAGCGA
AACTTCTGTATTAATTTCTTTCATAGCACGGACACGCATGCGTGAACAAT
AAGTGCAACATTACCGGTACCGATTTTTGTGAGGAAACATGTGACCAACC
AGATGGGTATTATTGTCATTGCAGATACGATCATGATGGTACTTTTTGTG
ATGAAAGTAAGTTTCTACTGTATGCTTTGTATTTACAATATCGATTTAAA
AAACTTTAGGGAAAGATTGTTGCTAATTTATAAAATCAATGACAAACTTC
TAACAATAACATAAGAGGGGTACAAAATTAGTGTAGGTGAGCATATTTTT
ATGACATGataattgtctttttttttattttacagatGTCTAATGTGGTC
AgatttttctaatttctaaATTCCGTTATCGAGAAAGTTTTTTAGGTATC
ACTACTTTGTCACGGAAAACTCAAGTCTAGGCTCGGCGtctgaaactaat
tttctccaTGTTAAAATGTTCTCCTGATAAGGTATAATCAATTCGATTTT
GTTGTCTGGGCAAGAGAGATTTTTATTTCAGGGAATGTATTACTTAGCCT
ACTTGCTAAGCCCGTATTTACAAGGCTAGGGCACACGGTTAATGGTATAA
TATAGCGTTTTTgacgctttaaagattttttttatttacggattttaagt
ttgccttggaatactattagttacacggtcttctcgaggtgggatacggg
atatacagggtcagtaaaaaccgtattggtgaTGAGGTTTCATactcagt
cacaacttaccatcagatttatcctggtgactgaatcaaactagatttct
aggctatgtATTACTATGAATATCTCTTAAACTCACTTGAAAGCTCTTAT
ATGATGAAATGATATGTTATCTTTTCTCTTTAGGATTGATATGTGCTTTT
CAGTCATGGGAACTGGATACTGAAAAATGGAATCAATTTAATAGTGTGAC
AGGTATGAAGAATTAGCTGttctttgttttttgaaatttaaagtcttaaa
agttcttacgatgttcttaaaagAGGGTTTAAAATATGTTTAAGTCTGTT
AACATCAGAGCTTTTTAAGTAATTTCGAAATCTgtggctcagattgttct
taatttatgcttaagtctttgccaattttcaatttttaataacgtgttgt
tataaaattgttcttataaaaaagcgtgtatttgatTTACCTCgtgttat
atttttatttccagCCACAAGCCTTACTATAGACGAATGCCAAGAAAGAT
GCTTCGAAGAATATAAGAATGGACTGGTCACGCATATTTTCTACAAGAAC
GAAACTCATGCTCTTACAACGTTCCCGACGCGATGTCTTTGCTATAATGG
GGTTGTTTCTGGAGGGAGTACCCGAGAGGGTCATTTTGGTTGTGAAATGa
ctcttctttgaaaaaaaactagTACAGACCCGATACAATATTTTCAGCCA
GTCGTGGTAAAAATAACGAACTTAAACGAATTTCATTAGTTTCAAGTTTG
GAAATTTAGTGGGGGTTAAAAGAAATAGCACAGtaatttgcagtgaggat
ttgtttatttcttcatttttaacaaaaattggagtacaattttcGACTGG
GGACGATAATTTGGCTTATTGGCCCAGCGATAGCAtatgggcctttcatt
agcccTTTGCTGTTACGCTAGGGTCTCCCCTGTGTTCGCGCATCACACGG
GTTTTATGGTTTACAGGCTAAAAGCTTCCATATATTCAACATGAACCCGA
CTGGATGTATTCGTGTTTAAATGAATTATATAATATGTTATATTATACTA
CGGTGTTTGCAAATTGTATATTATACTACTGCATTATACATTATGTTGTT
CTATTATTATTCTGTTATTATGTAATGTTAGATATAATACAGTCAGGAGT
ACATTCAACATGAACCCGACTGGATGTATTTGACCGGAAAGGATAACCCA
AGACAGGAATTCCAATTTACTTCCAAGGAAGTTAATCAAAAGGGAAAACG
TAAGATACAAACCTCCGAAATGTGATCCTTATCTCTGATCccgtctttct
cttttctgactgtctgagtttctgagtttctcatttctgactgagttttc
atacctgtcaatcatttgaccattaatttcgaccagtctaattttcggac
cgagtgggattcgaaccaccaccaaagaaagaccttcggattcggaagcc
agcgctatatcccttgagccatcgccgcacagcaaaatcacgcaattcat
aacattttataccaaactggcaaaatacgggggtaatattattataatat
gggtaaaagtaccccttttttaaacctgactgaaattcgagccgttacta
gcaaccctgcggggcccaaggcgccg Coding sequence (CDS) from alignment at scaffold_316:124387..128562+ >TCONS_00059046 ID=TCONS_00059046|Name=TCONS_00059046|organism=Clytia hemisphaerica|type=CDS|length=2976bp|location=Sequence derived from alignment at scaffold_316:124387..128562+ (Clytia hemisphaerica)
ATGAAGTCTTATCTTTTGCTAGTAGCCTCGATTCTTACTGCATCAATCTA
CTCTCAACAAATACTAAGGCTGCCACAATGTGATAAATTTGGAGCTACAT
TCAAAGTCTCTAAACGCAAGATCATAGGTTTAGACACGGAAGGTTTGATA
ATAGAACATTCTGGCGTTTATCAAAAGGAAAGATGCAGCTCATTATGTAT
TGAGGAAGAAACATGCGAGTCGGCATTTTATCACATTGAGCTACAGAAGT
GTAAACTTTATTCGAAAACCTTTGATGAAGAAAGTGAGCTTGTGGAAACA
GACGGGGTGCTGTATATGACAAGTGATGATTCGTTGGGCGATGATCTGCA
CGGACACGCATGCGTGAACAATAAGTGCAACATTACCGGTACCGATTTTT
GTGAGGAAACATGTGACCAACCAGATGGGTATTATTGTCATTGCAGATAC
GATCATGATGGTACTTTTTGTGATGAAAGATTGATATGTGCTTTTCAGTC
ATGGGAACTGGATACTGAAAAATGGAATCAATTTAATAGTGTGACAGCCA
CAAGCCTTACTATAGACGAATGCCAAGAAAGATGCTTCGAAGAATATAAG
AATGGACTGGTCACGCATATTTTCTACAAGAACGAAACTCATGCTCTTAC
AACGTTCCCGACGCGATGTCTTTGCTATAATGGGGTTGTTTCTGGAGGGA
GTACCCGAGAGGGTCATTTTGGTTGTGAAATGactcttctttgaATGAAG
TCTTATCTTTTGCTAGTAGCCTCGATTCTTACTGCATCAATCTACTCTCA
ACAAATACTAAGGCTGCCACAATGTGATAAATTTGGAGCTACATTCAAAG
TCTCTAAACGCAAGATCATAGGTTTAGACACGGAAGGTTTGATAATAGAA
CATTCTGGCGTTTATCAAAAGGAAAGATGCAGCTCATTATGTATTGAGGA
AGAAACATGCGAGTCGGCATTTTATCACATTGAGCTACAGAAGTGTAAAC
TTTATTCGAAAACCTTTGATGAAGAAAGTGAGCTTGTGGAAACAGACGGG
GTGCTGTATATGACAAGTGATGATTCGTTGGGCGATGATCTGCACGGACA
CGCATGCGTGAACAATAAGTGCAACATTACCGGTACCGATTTTTGTGAGG
AAACATGTGACCAACCAGATGGGTATTATTGTCATTGCAGATACGATCAT
GATGGTACTTTTTGTGATGAAAGATTGATATGTGCTTTTCAGTCATGGGA
ACTGGATACTGAAAAATGGAATCAATTTAATAGTGTGACAGCCACAAGCC
TTACTATAGACGAATGCCAAGAAAGATGCTTCGAAGAATATAAGAATGGA
CTGGTCACGCATATTTTCTACAAGAACGAAACTCATGCTCTTACAACGTT
CCCGACGCGATGTCTTTGCTATAATGGGGTTGTTTCTGGAGGGAGTACCC
GAGAGGGTCATTTTGGTTGTGAAATGactcttctttgaATGAAGTCTTAT
CTTTTGCTAGTAGCCTCGATTCTTACTGCATCAATCTACTCTCAACAAAT
ACTAAGGCTGCCACAATGTGATAAATTTGGAGCTACATTCAAAGTCTCTA
AACGCAAGATCATAGGTTTAGACACGGAAGGTTTGATAATAGAACATTCT
GGCGTTTATCAAAAGGAAAGATGCAGCTCATTATGTATTGAGGAAGAAAC
ATGCGAGTCGGCATTTTATCACATTGAGCTACAGAAGTGTAAACTTTATT
CGAAAACCTTTGATGAAGAAAGTGAGCTTGTGGAAACAGACGGGGTGCTG
TATATGACAAGTGATGATTCGTTGGGCGATGATCTGCACGGACACGCATG
CGTGAACAATAAGTGCAACATTACCGGTACCGATTTTTGTGAGGAAACAT
GTGACCAACCAGATGGGTATTATTGTCATTGCAGATACGATCATGATGGT
ACTTTTTGTGATGAAAGATTGATATGTGCTTTTCAGTCATGGGAACTGGA
TACTGAAAAATGGAATCAATTTAATAGTGTGACAGCCACAAGCCTTACTA
TAGACGAATGCCAAGAAAGATGCTTCGAAGAATATAAGAATGGACTGGTC
ACGCATATTTTCTACAAGAACGAAACTCATGCTCTTACAACGTTCCCGAC
GCGATGTCTTTGCTATAATGGGGTTGTTTCTGGAGGGAGTACCCGAGAGG
GTCATTTTGGTTGTGAAATGactcttctttgaATGAAGTCTTATCTTTTG
CTAGTAGCCTCGATTCTTACTGCATCAATCTACTCTCAACAAATACTAAG
GCTGCCACAATGTGATAAATTTGGAGCTACATTCAAAGTCTCTAAACGCA
AGATCATAGGTTTAGACACGGAAGGTTTGATAATAGAACATTCTGGCGTT
TATCAAAAGGAAAGATGCAGCTCATTATGTATTGAGGAAGAAACATGCGA
GTCGGCATTTTATCACATTGAGCTACAGAAGTGTAAACTTTATTCGAAAA
CCTTTGATGAAGAAAGTGAGCTTGTGGAAACAGACGGGGTGCTGTATATG
ACAAGTGATGATTCGTTGGGCGATGATCTGCACGGACACGCATGCGTGAA
CAATAAGTGCAACATTACCGGTACCGATTTTTGTGAGGAAACATGTGACC
AACCAGATGGGTATTATTGTCATTGCAGATACGATCATGATGGTACTTTT
TGTGATGAAAGATTGATATGTGCTTTTCAGTCATGGGAACTGGATACTGA
AAAATGGAATCAATTTAATAGTGTGACAGCCACAAGCCTTACTATAGACG
AATGCCAAGAAAGATGCTTCGAAGAATATAAGAATGGACTGGTCACGCAT
ATTTTCTACAAGAACGAAACTCATGCTCTTACAACGTTCCCGACGCGATG
TCTTTGCTATAATGGGGTTGTTTCTGGAGGGAGTACCCGAGAGGGTCATT
TTGGTTGTGAAATGactcttctttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059046-exon-scaffold_316-1491911889:124387..124866 | TCONS_00059046-exon-scaffold_316-1491911889:124387..124866 | Clytia hemisphaerica | exon |
| TCONS_00059046-exon-scaffold_316-1510915933:124387..124866 | TCONS_00059046-exon-scaffold_316-1510915933:124387..124866 | Clytia hemisphaerica | exon |
| TCONS_00059046-exon-scaffold_316-1575043694:124387..124866 | TCONS_00059046-exon-scaffold_316-1575043694:124387..124866 | Clytia hemisphaerica | exon |
| TCONS_00059046-exon-scaffold_316-1491911889:126213..126342 | TCONS_00059046-exon-scaffold_316-1491911889:126213..126342 | Clytia hemisphaerica | exon |
| TCONS_00059046-exon-scaffold_316-1510915933:126213..126342 | TCONS_00059046-exon-scaffold_316-1510915933:126213..126342 | Clytia hemisphaerica | exon |
| TCONS_00059046-exon-scaffold_316-1575043694:126213..126342 | TCONS_00059046-exon-scaffold_316-1575043694:126213..126342 | Clytia hemisphaerica | exon |
| TCONS_00059046-exon-scaffold_316-1491911889:127070..127138 | TCONS_00059046-exon-scaffold_316-1491911889:127070..127138 | Clytia hemisphaerica | exon |
| TCONS_00059046-exon-scaffold_316-1510915933:127070..127138 | TCONS_00059046-exon-scaffold_316-1510915933:127070..127138 | Clytia hemisphaerica | exon |
| TCONS_00059046-exon-scaffold_316-1575043694:127070..127138 | TCONS_00059046-exon-scaffold_316-1575043694:127070..127138 | Clytia hemisphaerica | exon |
| TCONS_00059046-exon-scaffold_316-1491911889:127401..128562 | TCONS_00059046-exon-scaffold_316-1491911889:127401..128562 | Clytia hemisphaerica | exon |
| TCONS_00059046-exon-scaffold_316-1510915933:127401..128562 | TCONS_00059046-exon-scaffold_316-1510915933:127401..128562 | Clytia hemisphaerica | exon |
| TCONS_00059046-exon-scaffold_316-1575043694:127401..128562 | TCONS_00059046-exon-scaffold_316-1575043694:127401..128562 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_316 | supercontig | scaffold_316:124387..128562 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003609 | Pan_app |
Blast
The following BLAST results are available for this feature:
|
