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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059045 ID=TCONS_00059045|Name=TCONS_00059045|organism=Clytia hemisphaerica|type=transcript|length=1174bp
CCTGAAAAAAGTTTCGAATGCTTGAGTTGAGTTGAAGGGCATGACTATAA
AGAGAGGAGAAAGGGTTTTAAGAATCATTCAATTCTGAAGATCACCAAAA
GAGAGATATCAAAAAGAAGATTTATTACTGCGTAAATCAAGACAGTGAAA
GATGAAACTTCTTTGTTTGGCAATACTTTGCTTTTTCATATCAACTGCAA
AAGCTAACCAAAATGCAAACGAAATATCGCATGACGGTGAGTCCAGATTG
AGATTCGAAAATGTCGAAGATCCCATTACAAACGTGGACAAAGAAGATCA
Agaagaagatttgaaaaatgatgataaagaaaatgaagatgaagaaaata
atgatgataatgatgatAGTGATgagaatgaagaagaaaatgaagacgac
GCAGATAAGGATGACGATGGCGATGACAAAATAAATGATCACGAGGTTCA
GCTTGCCGATCCGGATAATTCCCTTAAAGTTCAAAAAGACCCCGCCGTTG
GAAGATTGCTTGTACATGGGGCAAGAACTGCCTTGAAATTTCGCCGTGCT
ACTGGTTTCCGAGTACGTCGAACCTTCCGTCGAGTTCGACGTGCATTTAG
AAGGTCTCGACGTGGAGGACGTCGATCCAGACGTAACAGAAGAGGTGGAC
GCCGTGGAGGTAGAAGAGGACGCCGTGGTGGAAGACGGGGACGCAGAGGT
CGACGTGGACGTGGACGGGGAAGACGTGGAAGACGATGGGGATAATTTTg
agacttgaagaaaaatttgctGCAACTGAATATAATTATTCATTATTCTT
AGAAGggttatatatttttaattttctatgttAATCTGTTTTTTTGTTCA
TACTAACCAATATTGATGGTATGATATATGAAAACTTTTACCAAACTTTT
TTTTGCActaaattttgaagaaatataTACTTacggtgaaaaagaaattt
ggagAAAACTAAATGAAACTAcaccagagatttgggaaatgGGAGATATG
AAACGTGtctttttatcttttgtttATAAGGGATCGACTCTATTGTTTCT
TTTGAAATCTTATATCAACTaatgtttttttcataagaataaactatata
agaacgtaaggcttcgatagccaaaatattaagagtaagtttagaatatt
ttaaggctttatggattCTAAAAC Run BLAST on NCBI transcript from alignment at scaffold_316:119652..122712+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059045 ID=TCONS_00059045|Name=TCONS_00059045|organism=Clytia hemisphaerica|type=transcript|length=3061bp|location=Sequence derived from alignment at scaffold_316:119652..122712+ (Clytia hemisphaerica)
CCTGAAAAAAGTTTCGAATGCTTGAGTTGAGTTGAAGGGCATGACTATAA
AGAGAGGAGAAAGGGTTTTAAGAATCATTCAATTCTGAAGATCACCAAAA
GAGAGATATCAAAAAGAAGATTTATTACTGCGTAAATCAAGACAGTGAAA
GATGAAACTTCTTTGTTTGGCAATACTTTGCTTTTTCATATCAACTGCAA
AAGGTATTCCTTACTTCAATTGTTCTCTCCTATAGACGATACCAATGtta
ttagttgttttacggaccCGACCTAccctcccggggggggggcactgggt
ttgtggactgacggtatgtgcgggccaaaaattggcttttaaaattgcac
ccttacagtgcagcaaaaatcagtgaaattcNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccaaattttcgatc
cctttcgtgcaaaaaatggtcaaaattctagcatttttggtcaaaatatc
tagatttttcaagaattttctgaaatttctacccttgcagtgcatctcta
gtttttccgacccttacagtgcatttgaggtgccttgaaaaagacaccct
tagtgcccgcacatacccgtcggtacttttgcccagctgccccccccggg
cctaccctgaaattccaaaagtcGAAATAAATCTTTATTTATATTTTNtt
gcccagctgccccccccgggcctaccctgaaattccaaaagtcgaaataa
atctttatttatattttagtAGTACTTTTAAGGTTTCATTGCTTTACATA
CCCCCAATTTTTCGtagttttttcaaggttttgagaattttatgtcaATT
TTTCATCATATTCTTGAACTAgacctttttgtgtcttttcgttttttatt
tcgacatttttgtcgcagtttttgctgcctttttaggagattttataggt
gaatttctactttttgttttattttttcgccgatcGACCAACCCTATTTT
TTGGGAAGCTTAGcacgtaaaacaacaaattaaattggcctcacCTAACC
AACAATAAACTAGGATTTGCAGTTTAATCTGTCTTTTACGTTGGTTTCAA
AAACATTTACGACTGTTAATCAAATACGTCAAATTGTAATTCAAGGAATC
CGGGAGATTAGGTCTGCTGCTCCCATCTGCACTTtcagaaaaattatatt
tcaaaaccaTGATTTGTTTACCTTAGCTAACCAAAATGCAAACGAAATAT
CGCATGACGGTGAGTCCAGATTGAGATTCGAAAATGTCGAAGATCCCATT
ACAAACGTGGACAAAGAAGATCAAgaagaagatttgaaaaatgatgataa
agaaaatgaagatgaagaaaataatgatgataatgatgatAGTGATgaga
atgaagaagaaaatgaagacgacGCAGATAAGGATGACGATGGCGATGAC
AAAATAAATGATCACGAGGTTCAGCTTGCCGATCCGGATAATTCCCTTAA
AGGTAAGAAATAAAAAGCTTTCGAGGGAATGTTATTGTCAAATAGGTGCG
ATTTTCATGGATCTACAATGGTTATTTcatcgtttttcaaaatttgcagT
TCTAGCGATAAAGTCACTTTTGGACTTTGCTAAATGTAATCATATGTAAT
CGAGGCCTATATTCTGAGCCTCTTGAactatttatgaaatttttaatcAT
TATTCCTATGGCTAAGGTTAAAATTCATAGTTAAACTTTACCATTCTTAC
CTGACTTAGAATGCTTCTAAATCGTTTTTGGCTAAAAGATTTTGTgtcaa
tttcccttttttctcaagtaTTACGACTTTGATTGCAGTTTGAAGAAAGG
GCTCAATACATAATTCTTTATTTATaaactttttgaagcctttgggttat
tcttcaatttttgggttttaagtcTTGCTgagcaaatatttttttggaat
actCCTATATTCAGTAAAATCTAAGCAAATTGTTCGCtttagagtctgca
aaaccTCTGAAATGTTCCTAAAATATgttctgaaatctttttttccgCGA
GGCTTTTGTTCTTAGatactttttgctttaaaaacgGTAGCTTGAAAGTT
AAACTAAGATCATTGAACAGCAAAGTGTAAAACCAAAATGCAACAGTGAC
TACTACAACCAAATAACATATTACTAAAAAATTTATATCATCTCCTCTCC
TTAACAGTTCAAAAAGACCCCGCCGTTGGAAGATTGCTTGTACATGGGGC
AAGAACTGCCTTGAAATTTCGCCGTGCTACTGGTTTCCGAGTACGTCGAA
CCTTCCGTCGAGTTCGACGTGCATTTAGAAGGTCTCGACGTGGAGGACGT
CGATCCAGACGTAACAGAAGAGGTGGACGCCGTGGAGGTAGAAGAGGACG
CCGTGGTGGAAGACGGGGACGCAGAGGTCGACGTGGACGTGGACGGGGAA
GACGTGGAAGACGATGGGGGTAATNGGACGCAGAGGTCGACGTGGACGTG
GACGGGGAAGACGTGGAAGACGATGGGGATAATTTTgagacttgaagaaa
aatttgctGCAACTGAATATAATTATTCATTATTCTTAGAAGggttatat
atttttaattttctatgttAATCTGTTTTTTTGTTCATACTAACCAATAT
TGATGGTATGATATATGAAAACTTTTACCAAACTTTTTTTTGCActaaat
tttgaagaaatataTACTTacggtgaaaaagaaatttggagAAAACTAAA
TGAAACTAcaccagagatttgggaaatgGGAGATATGAAACGTGtctttt
tatcttttgtttATAAGGGATCGACTCTATTGTTTCTTTTGAAATCTTAT
ATCAACTaatgtttttttcataagaataaactatataagaacgtaaggct
tcgatagccaaaatattaagagtaagtttagaatattttaaggctttatg
gattCTAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059045-exon-scaffold_316-1491911889:119652..119854 | TCONS_00059045-exon-scaffold_316-1491911889:119652..119854 | Clytia hemisphaerica | exon |
| TCONS_00059045-exon-scaffold_316-1510915933:119652..119854 | TCONS_00059045-exon-scaffold_316-1510915933:119652..119854 | Clytia hemisphaerica | exon |
| TCONS_00059045-exon-scaffold_316-1575043694:119652..119854 | TCONS_00059045-exon-scaffold_316-1575043694:119652..119854 | Clytia hemisphaerica | exon |
| TCONS_00059045-exon-scaffold_316-1491911889:120978..121253 | TCONS_00059045-exon-scaffold_316-1491911889:120978..121253 | Clytia hemisphaerica | exon |
| TCONS_00059045-exon-scaffold_316-1510915933:120978..121253 | TCONS_00059045-exon-scaffold_316-1510915933:120978..121253 | Clytia hemisphaerica | exon |
| TCONS_00059045-exon-scaffold_316-1575043694:120978..121253 | TCONS_00059045-exon-scaffold_316-1575043694:120978..121253 | Clytia hemisphaerica | exon |
| TCONS_00059045-exon-scaffold_316-1491911889:121959..122177 | TCONS_00059045-exon-scaffold_316-1491911889:121959..122177 | Clytia hemisphaerica | exon |
| TCONS_00059045-exon-scaffold_316-1510915933:121959..122177 | TCONS_00059045-exon-scaffold_316-1510915933:121959..122177 | Clytia hemisphaerica | exon |
| TCONS_00059045-exon-scaffold_316-1575043694:121959..122177 | TCONS_00059045-exon-scaffold_316-1575043694:121959..122177 | Clytia hemisphaerica | exon |
| TCONS_00059045-exon-scaffold_316-1491911889:122237..122712 | TCONS_00059045-exon-scaffold_316-1491911889:122237..122712 | Clytia hemisphaerica | exon |
| TCONS_00059045-exon-scaffold_316-1510915933:122237..122712 | TCONS_00059045-exon-scaffold_316-1510915933:122237..122712 | Clytia hemisphaerica | exon |
| TCONS_00059045-exon-scaffold_316-1575043694:122237..122712 | TCONS_00059045-exon-scaffold_316-1575043694:122237..122712 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_316 | supercontig | scaffold_316:119652..122712 + |
Blast
The following BLAST results are available for this feature:
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