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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059044 ID=TCONS_00059044|Name=TCONS_00059044|organism=Clytia hemisphaerica|type=transcript|length=2342bp
CCGCTCAAATCAATATCGAGTATTCACATAGCCATTCGACAAAATCATTA
CAAAGTTTGAGCTTCAAAGATATTCCTGACCACGTTTCAAAGACGATACA
TGAACTTTTTCAGAAAGGATATACCCCTGGATTAGCATATCAACGCATCT
CTTCTTTTCAACAAAGCAACCCTGACAACCTCGTAAAATTACAACATTTC
AATGCAGAGGAAAATGTCCCTTTGATATTATGTATCATCACTCCATTAAT
GCAACGGGTTCATGAAAAGGTTCCTACAGCGGCTGAGTTGGTCTTTATTG
ATTCGACATCAAATACAGAAGAGTTCAATCTCAGAGTTTTTCTCCTGGTG
ACTCATACGCCAATTGGTGTCTTACCGCTTGGAATTTTGTTTACAAGTGA
TGAGACAACGGATACCTTGATCCAAGCACTTGAATTGTACTTGGCTCTGT
TACCTGATTTGGCTTTCTATAAACGTGGAAAGCGCCGGGGACCATCCGTT
TTCATGACTGACAACTGTTCCGAATTGCGTGATGCATTGAAGAACACTTG
GCCAGAATCAACCCTTTTACTATGTATATTTCATATTCTCCAACAAGTTT
GGCGCTGGTTATTTgacaaaaacaatggaattgcaGCTGGCGACAGACCG
GGTATAATGACACAATTCAAGAGAGTGTTGTATCAATATATCCTAAACTC
TCATCTTACTTAAATGGCTTGTATGATTATAAAACCAGTTGGGCACTTTG
CTTCCGAAGAAAATTGATGTTAAGGGGTAATAATACAAATAATGCAGTCG
AGGCTCAATTCTTAGTCCTTAAGGACAACATCCTAAATAGAACTAAAGAA
ATTAATATAAAtggtttgtttgataaaatgacaaatgaGCTCAATGAGCA
TTACAAAGTTAAACTTTTAAATGTAGCCTCTGGAAGTTTCGACGGTGTTT
ATGCTCAACGATTCAAACGGAAAGAGAAGAAGAACAAAAGTGGTGGAAAG
GTATTTCGGTTACCTGATTTAGTCAGTCAAGCGTCGTTTGCCTCTCAAAT
CATACAAGTTGGTCCGTCAGTTTATAATTGTCCAAGTTTTACAAATGCCG
ATTCTACTTATACCATTGACATGGATATTGGTGTTTGTACATGTGAAGTG
GGTTTAGATGGTTCAGTCTGTAAGCACCAATACGTTGTGTGGAGTCATAA
GCTTGGCAAAGGCCGAAATTTTTTACCCTATCTAAACGCAGAAGAGAGAA
AAGGATACGCATACATCGCTATCGGAAAATCATTACCCGATTCGTATTAT
GAAGGTATTCATTCGGATAACACCCAGCAAGCAAACAACCAAGCTGACAG
TTATACCACAAATGACGCAGTTGCAATTGAAAAGATTATTATTCAAGACC
AATctgaatttcaaagaaacagaATCGAGCAAACATCAGCCGAAGAATGC
AGATCTAATCTGCGCAAAGCAACAAAATATTTGATAACCAAAATCGACGT
ACGAGAGAATGATCAATCACTTCTCAATGGAATAATGACATTCTGTGATC
GTGTTCAAAAGTATCCTACCTCCCGATTGACAAGCCTATTTCATTCATTT
GGAAGCACTATGACAACCAGCCGTAAAATTACCGCAAACTCTATTCTAAA
GAAAGCCAAACGTGGTAAGATTTTTGTGCAACCAGGAGCTGTTCAAAGGC
GCGCATCTCTATCAGGCTCTAGAAATGCAAGAGTTAAAGGTATACAAGTG
AAAAATAATCCCTTTGTTGGAAAGATTCCATCCAGAAAGAGACCACATGC
CTTTTCGGACAACGTTAGAAATAATGTAGCAGCACCTCACAAAGCGGGAA
AAACTATGAGTACCAAAACGAAACACCTTTCAAAATGTAAATCTAAATCA
GTTGGTAAGACCAATGAAGAATAACACTTGAGCATATTCTTTTTTATCta
agtttgttttattttcattgaaagaatAGCATTCGTTACGAAAATATTTA
CATTAAAGTATGaactcaaaaatgttttttgttatGCCTGACCATGTTGC
CCTTGCTACCAAACCTTTTTCCACAAGCATCGCATTCGAAAGTCTTTTCG
TGACTTTTTACATGTGTTAAAAACGTTTGCTTTATACCAAATTTTTTGTT
GCATATTTTACAAGTATAATTCTCCTCATGGGTTTTCATGTGCTTCTTCA
TAAGATCctttgttttgaatgttttccCACAACCTTCGCTGTAACAAAAT
AATTCGTCCCCACATTGTTTTTCATGGAAccgctttctttttttttgctt
aaagaattTGCCACACAAGCCACATTCGTAACCAGGCGTTTT Run BLAST on NCBI transcript from alignment at scaffold_316:64535..67554+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059044 ID=TCONS_00059044|Name=TCONS_00059044|organism=Clytia hemisphaerica|type=transcript|length=3020bp|location=Sequence derived from alignment at scaffold_316:64535..67554+ (Clytia hemisphaerica)
CCGCTCAAATCAATATCGAGTATTCACATAGCCATTCGACAAAATCATTA
CAAAGTTTGAGCTTCAAAGATATTCCTGACCACGTTTCAAAGACGATACA
TGAACTTTTTCAGAAAGGATATACCCCTGGATTAGCATATCGTGAGATGA
TGCAAGACCTCAAGTCAAAGAGTACAGATGACCTAGATTTACACCTGAAA
CTGGCAGACCGCTCACAAATGCCACGGAGGAGAGATTTCAATAATTTATA
TACAGATTATCATAGAAGATTGTTCGGAACCGCCAATATCaaagaaatgt
ttaaaaatcttgaaggTATGGAAATATAATCCAAAATGTTATGAGTTATA
CCTATACATTTTTAACCTTTTAACCAATTTAGGGCATGATTGTTGTTTAA
TGAATGATCCTGAAAATTGTGTCTTGATTATAGACTCGGAGTCATTCTGA
CAGAAGTTTCCTAAAGGATGTACAATTGAATCTCTTAAATTCCTATCTCT
GTCTCGAGTCCAACAAGAAGCTCGATCCTCGGGTATTCTAGACAAAATTT
GTTTctttatcttgaaatttctccatctcgaacaaatttttcaatctttt
aagAGAGAGATAGCGAGATTCCACTGTATAAAATAATAGAGTACTTTCAA
GGATTTTGAATAGATATTTGCATCTTCTTTAGAACGCATCTCTTCTTTTC
AACAAAGCAACCCTGACAACCTCGTAAAATTACAACATTTCAATGCAGAG
GAAAATGTCCCTTTGATATTATGTATCATCACTCCATTAATGCAACGGGT
TCATGAAAAGGCACAGTTTTACTTCTTAAAATACTTATTATTTATATTGT
AATTCAATAAAAATGGCAATAATGATAAACACATTTATAGCATTCTTTGA
TTGCATCAAGTGACTGTCTTTATGGACTTTTTCATAACTCTTTTTAGGTT
CCTACAGCGGCTGAGTTGGTCTTTATTGATTCGACATCAAATACAGAAGA
GTTCAATCTCAGAGTTTTTCTCCTGGTGACTCATACGCCAATTGGTGTCT
TACCGCTTGGAATTTTGTTTACAAGTGATGAGACAACGGATACCTTGATC
CAAGCACTTGAATTGTACTTGGCTCTGTTACCTGATTTGGCTTTCTATAA
ACGTGGAAAGCGCCGGGGACCATCCGTTTTCATGACTGACAACTGTTCCG
AATTGCGTGATGCATTGAAGAACACTTGGCCAGAATCAACCCTTTTACTA
TGTATATTTCATATTCTCCAACAAGTTTGGCGCTGGTTATTTgacaaaaa
caatggaattgcaGCTGGCGACAGACCGGGTATAATGACACAATTCAAGA
GAGTGTTGTATCAATATATCCTAAACTCTCATCTTACTTAAATGGCTTGT
ATGATTATAAAACCAGTTGGGCACTTTGCTTCCGAAGAAAATTGATGTTA
AGGGGTAATAATACAAATAATGCAGTCGAGGCTCAATTCTTAGTCCTTAA
GGACAACATCCTAAATAGAACTAAAGAAATTAATATAAAtggtttgtttg
ataaaatgacaaatgaGCTCAATGAGCATTACAAAGTTAAACTTTTAAAT
GTAGCCTCTGGAAGTTTCGACGGTGTTTATGCTCAACGATTCAAACGGAA
AGAGAAGAAGAACAAAAGTGGTGGAAAGGTATTTCGGTTACCTGATTTAG
TCAGTCAAGCGTCGTTTGCCTCTCAAATCATACAAGTTGGTCCGTCAGTT
TATAATTGTCCAAGTTTTACAAATGCCGATTCTACTTATACCATTGACAT
GGATATTGGTGTTTGTACATGTGAAGTGGGTTTAGATGGTTCAGTCTGTA
AGCACCAATACGTTGTGTGGAGTCATAAGCTTGGCAAAGGCCGAAATTTT
TTACCCTATCTAAACGCAGAAGAGAGAAAAGGATACGCATACATCGCTAT
CGGAAAATCATTACCCGATTCGTATTATGAAGGTATTCATTCGGATAACA
CCCAGCAAGCAAACAACCAAGCTGACAGTTATACCACAAATGACGCAGTT
GCAATTGAAAAGATTATTATTCAAGACCAATctgaatttcaaagaaacag
aATCGAGCAAACATCAGCCGAAGAATGCAGATCTAATCTGCGCAAAGCAA
CAAAATATTTGATAACCAAAATCGACGTACGAGAGAATGATCAATCACTT
CTCAATGGAATAATGACATTCTGTGATCGTGTTCAAAAGTATCCTACCTC
CCGATTGACAAGCCTATTTCATTCATTTGGAAGCACTATGACAACCAGCC
GTAAAATTACCGCAAACTCTATTCTAAAGAAAGCCAAACGTGGTAAGATT
TTTGTGCAACCAGGAGCTGTTCAAAGGCGCGCATCTCTATCAGGCTCTAG
AAATGCAAGAGTTAAAGGTATACAAGTGAAAAATAATCCCTTTGTTGGAA
AGATTCCATCCAGAAAGAGACCACATGCCTTTTCGGACAACGTTAGAAAT
AATGTAGCAGCACCTCACAAAGCGGGAAAAACTATGAGTACCAAAACGAA
ACACCTTTCAAAATGTAAATCTAAATCAGTTGGTAAGACCAATGAAGAAT
AACACTTGAGCATATTCTTTTTTATCtaagtttgttttattttcattgaa
agaatAGCATTCGTTACGAAAATATTTACATTAAAGTATGaactcaaaaa
tgttttttgttatGCCTGACCATGTTGCCCTTGCTACCAAACCTTTTTCC
ACAAGCATCGCATTCGAAAGTCTTTTCGTGACTTTTTACATGTGTTAAAA
ACGTTTGCTTTATACCAAATTTTTTGTTGCATATTTTACAAGTATAATTC
TCCTCATGGGTTTTCATGTGCTTCTTCATAAGATCctttgttttgaatgt
tttccCACAACCTTCGCTGTAACAAAATAATTCGTCCCCACATTGTTTTT
CATGGAAccgctttctttttttttgcttaaagaattTGCCACACAAGCCA
CATTCGTAACCAGGCGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059044-exon-scaffold_316-1491911889:64535..64675 | TCONS_00059044-exon-scaffold_316-1491911889:64535..64675 | Clytia hemisphaerica | exon |
| TCONS_00059044-exon-scaffold_316-1510915933:64535..64675 | TCONS_00059044-exon-scaffold_316-1510915933:64535..64675 | Clytia hemisphaerica | exon |
| TCONS_00059044-exon-scaffold_316-1575043694:64535..64675 | TCONS_00059044-exon-scaffold_316-1575043694:64535..64675 | Clytia hemisphaerica | exon |
| TCONS_00059044-exon-scaffold_316-1491911889:65217..65344 | TCONS_00059044-exon-scaffold_316-1491911889:65217..65344 | Clytia hemisphaerica | exon |
| TCONS_00059044-exon-scaffold_316-1510915933:65217..65344 | TCONS_00059044-exon-scaffold_316-1510915933:65217..65344 | Clytia hemisphaerica | exon |
| TCONS_00059044-exon-scaffold_316-1575043694:65217..65344 | TCONS_00059044-exon-scaffold_316-1575043694:65217..65344 | Clytia hemisphaerica | exon |
| TCONS_00059044-exon-scaffold_316-1491911889:65482..67554 | TCONS_00059044-exon-scaffold_316-1491911889:65482..67554 | Clytia hemisphaerica | exon |
| TCONS_00059044-exon-scaffold_316-1510915933:65482..67554 | TCONS_00059044-exon-scaffold_316-1510915933:65482..67554 | Clytia hemisphaerica | exon |
| TCONS_00059044-exon-scaffold_316-1575043694:65482..67554 | TCONS_00059044-exon-scaffold_316-1575043694:65482..67554 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_316 | supercontig | scaffold_316:64535..67554 + |
Blast
The following BLAST results are available for this feature:
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