TCONS_00059042 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059042
Unique NameTCONS_00059042
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2013

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059042 ID=TCONS_00059042|Name=TCONS_00059042|organism=Clytia hemisphaerica|type=transcript|length=2013bp
CAGAAAGTTGAGATCTCTCGTGTAGATACAagatagaaaaatttttaagg
cgattttgagaaatattttgaattgaaaaaaaatcaaaactcattGACTG
ACTCAGTGACAAACGATATAGCTgttatcaaacaaaaaaaatatgaacaa
aTTAATTTTGCTTTGACTAGAGTGTCGAGTAATATAGCAAAGAACTATTT
TTTTATGTAAGAGCTTACGTCTGAGTAAAGCGCTTACAACAATTTCATGG
AGATACGAGCTACACAGTTAGATTGATAAACATTGTCGTATAAAAATACA
TCGGGGTTCAATTTATATTACTTTTAATTGATTTTACTCGTTGGACTTGT
CGCACAAATTTTGTTGTAATTTTTGTGTGTTTATCTGGAAGAATTTCGTT
TCAAATCCCAAGATGAGTACTAAGGAGTTTATTGACTATACAAAGgaTGC
TGGTATTTATGTTGGGTTTGCGAACCTTCCAAATCAAGTCCATCGGAAAT
CAGTTAAGCGTGGTTTTGAGTTTACCCTTATGGTTGTCGGAGAATCTGGC
CTtgGTAAATCGACACTGGTAGACAGTTTATTCTTAACATCATTATATTC
TGAGCGTGAAACACTAACGGCCGTCAATCGAATCAAAAGAACCGTCTCCG
TCTCACAATCANAACACTAACGGCCGTCAATCGAATCAAAAGAACAGTCT
CCGTGTCACAATCCACCGTCGAAATCGAAGAAAAAGGCGTCAAACTGAAG
CTGACGGTAGTTGATACTCCTGGATTTGGTGACTCGATCGATAATAGCGA
CAGTTGGTCTCCGATAGTCAGTTATATCGATGAACAATACGAAGCATATT
TACGAGACGAATCGGGTTTAAATCGACGAAACATCATCGATAATCGAGTA
CATTGTTGTCTATATTTCATCAATCCATGCGGTCAtggCCTCAAACCACA
AGATGTGGCCGTTATGAAATGTTTACATGATAAAGTCAACATCGTTCCCG
TCATTGCCAAAGCTGATACATTAACCAAGAAAGAAGTCAAAGAACTTAAA
CAGAGGATTCTTagagaaatttatgaaaatcaaattcaaatttatcAATT
CCCTGAGGcggatgaagaagaagatgatgaAGAATTTATAGCCGTTAATA
AAGAATTAAAAaaTAGCGTACCATTCGCTGTAGTTGGTAGCAATACAGTT
TACGAAGTGAATGGTAAAAAAGTCCGTGGAAGAATCTATCCATGGGGCGT
TGTTGATATCGAAAATCCAGCACATTGTGACTTCACCATGTTGAGGAATA
TGTTAATCAGGACGCACATGCAAGATTTGAAAGACGTCACACAAGACACA
CATTACGAAAATTACAGAGCGAAGAAATTGGCTTCAGGAGAACCACTCGA
AGTATCAGAAAAtGGTGGTGGTGGTCGCGCCAGTCAAGAACTCGACAGTC
GAGATGCACTTCTCATGGAAAAAGAGGCTGAAttgaGACGTATGCAAGAA
ATGATCGCCAAAATGCAAGCTTCTATGCTACAACAGCAACAAAACGTTTC
CTAGACTAGTGGCTAATCAGCTATACAATAAAGCTCAATAAAATCACGGT
ATCGTATCATATTGGAGTACGTACTTGGACTATGGCAAAATTTGAAGGGT
TAATACGGAAGATACCAATATCATACGTCGAAGTTTTTTACAGGGAAAAA
CTGGTAATACATCATTGGGATATGTAATTTTAGAAATGACTTTCAAAAAT
CAGTAATTATTATCTCACAGCTTGCATTCAGCGCTGTTCCAACGTCTATG
TAACGTTTTACTGACTTTAATATAACGCTCAAAACATTCTTCTCAGATGT
TAGGAATGAGAGGTAAAACCTAGAGTTGGCTTGAATGTAATGACGATTTC
ATTAGGGATAGCAgactattttcatttttctgtctgattaagaacatgtt
cagacgttacggttccgtatcgTTCCGAAAAGAAACagaagtgtgaacgt
caaaattcgaaac
Run BLAST on NCBI

transcript from alignment at scaffold_316:50052..57965+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059042 ID=TCONS_00059042|Name=TCONS_00059042|organism=Clytia hemisphaerica|type=transcript|length=7914bp|location=Sequence derived from alignment at scaffold_316:50052..57965+ (Clytia hemisphaerica)
CAGAAAGTTGAGATCTCTCGTGTAGATACAagatagaaaaatttttaagg
cgattttgagaaatattttgaattgaaaaaaaatcaaaactcattGACTG
ACTCAGTGACAAACGATATAGCTgttatcaaacaaaaaaaatatgaacaa
aTTAATTTTGCTTTGACTAGAGTGTCGAGTAATATAGCAAAGAACTATTT
TTTTATGTAAGAGCTTACGTCTGAGTAAAGCGCTTACAACAATTTCATGG
AGATACGAGCTACACAGTTAGATTGATAAACATTGTCGTATAAAAATACA
TCGGGGTTCAATTTATATTACTTTTAATTGATTTTACTCGTTGGACTTGT
CGCACAAATTTTGTTGTAATTTTTGTGTGTTTATCTGGAAGAATTTCGTT
TCAAATCCCAAGATGAGTACTAAGGAGTTTATTGACTATACAAAGGTTAG
GTCAAATTTGAATTATGGTCACTGCTATAAACTTACTTTATATGGGACTT
TGAATTTTAAAcagttttgaagaaaatagtgATTTAGTCagctttctcta
attcgaatcgcTGTTATCCCATTCGTTCTgttattcgaactaaaatatct
GAACTTTCAGTTGGAAAGTTTTATAAAATACTCCTCCTTGTAATTCGAag
gttttttaaaaactttgtttATTGAAACTGAGCTTTAAGCATCTTGGTCG
AATCATCTAATAATGCAACGTTTAGTTAAATTTCCGTATCGTCGAAGAAA
CGTTTTCTGTCATATAGTATACGAAGGACGCgtggttttatattttttat
acctAGCTTTTGATTTATGACATGTACCTTATTAGTAACAGATAAAGTTT
GAATCCCTTCGCTAATTATTTAGGGCGTTGTACATGTAAGTCTGACATCG
TCCATAGGAATTCGGTTAAAATTGTGTAATTAGTGAACCGTCACTAACTT
GAACTTGTataattcaattcttttttttaattcccGTATTAAGGGATGGT
AATTATAGGGGtaataattcgaatctctctgtaactCAGACTTTAATGTA
TTTGTAAACTAAgatcatgttcagacgttacggttccgttccgaaacgaa
acgaaactGCTTTGCTATTATTGTtacttattattattattaaaaataat
tacagtccaggcacacgagggcctctaaaccgatcttatacaaaaaatct
ttttaaagtaCAGTTTGTCATACTTTTTACAGTTTGCTATACTTTTTTCA
TTGTAGCGGAACTGTtctgttttcttgctccgaaacgtccATAAACTAGT
ATGAACACACtagatccgtaacgaaaatcataccggagcgaagCGTGTAT
GTAACGTGTTAACATGGTCTaaattaaacatttatttttctcaacttcag
gaTGCTGGTATTTATGTTGGGTTTGCGAACCTTCCAAATCAAGTCCATCG
GAAATCAGTTAAGCGTGGTTTTGAGTTTACCCTTATGGTTGTCGGAGAAT
CTGGCCTtggtaagaaatttttttgctactgCAACCTTTCGGTTCTATTT
CGCCCAGTGAGACAAGATTAAGAGGGTTGTGACCGGGATAGTACTTCCCT
TTTTGTTGTCTGTCAAATTCCTGAAGTTCTGTGGGTGAATTTTTAGTGAA
ACAATCActgtaaaaattcttttggACCAGCAATTTAGAAAACTTCTTAA
ATTTGCCAACCCAACCCCTCCTGAtaactgacctttatatatatatccct
ggacaaagctatatccgccatctttgatcggagttttttgaaagtggtaa
cCGCAAAGAAGCCATGGTAGTGTTAAAAATCTAACGtttaacggcgctac
atcattgcAGGTATTTCATGTAAAAGTAAGTCTAGCGCTCTCGAAgcatt
ttcaccgctattgagtagtgctaccattagagtaccactttcaaaataac
tttaatcaaagattttgtttggGCAGGATCGAGAAACTTTGTTCTGGGAT
AAATAATGGTCAGTGCTCTCGATCCCCTAGGCTGAAACATACAAAGCTAG
TCGAGGACTGTAATAATCATAATTTGCATTTAACTTATTCAGGTAAATCG
ACACTGGTAGACAGTTTATTCTTAACATCATTATATTCTGAGCGTGAAAC
ACTAACGGCCGTCAATCGAATCAAAAGAACCGTCTCCGTCTCACAATCAN
AACACTAACGGCCGTCAATCGAATCAAAAGAACAGTCTCCGTGTCACAAT
CCACCGTCGAAATCGAAGAAAAAGGCGTCAAACTGAAGCTGACGGTAGTT
GATACTCCTGGATTTGGTGACTCGATCGATAATAGCGACAGGTTGGTTTT
GTCGTCATTTTATGTCGGTTTTGAttccaaaaataactttttgaaaatga
ggaTATCGGTTTCAGTATCCCAGTAGAAATTATCTTTTCCCAATATGTCt
cttttcaaatcaatttgaGAAAGGTGGAGTTACCATAGCTCGGGTTTTTT
TCAATAACTCAACCAAATTGCTGGCATGGTGAAATGTTTCTAAGAAATCC
TTAATAACGAAAATTTGTATTCACCTCTTACAAACGATTTGAAATCCGTG
TAAATCAACCTCATTCACTaagatggattttttttcaataagtcGAAATT
TTCCTTATAACGAAATCCTATAATCTTtatagtccttataaaaaagtcgT
ATTCaagatatgcaccattgcattacatcacggacctaacagctgattgg
ttataagtgacgtaaaaccCGTCAATACGCCACTTGCGACCAATCAGCTG
TTAGGGCCGTGATGCAATTATGCAATCATGAATTCACCTCGTACAAACTT
TAAAGTTCTTTTATGTTTGTCTAATAATTTAATCATTTTCTCATCCTTGT
AATTTCAGTTGGTCTCCGATAGTCAGTTATATCGATGAACAATACGAAGC
ATATTTACGAGACGAATCGGGTTTAAATCGACGAAACATCATCGATAATC
GAGTACATTGTTGTCTATATTTCATCAATCCATGCGGTCAtgggtaagtt
tttttttaaatttttaatattctttGAAGCATTGTATCGCTTTGAGAAAC
gttggccgagtggttaaggcgtcaGCGACTCAAACTAGGAattcgcggtt
cgaatcccactcttTCCAATGTTCCTTTCAGCTCATAGATAGCCGACCCG
ACTGTCCGTGGACTCTGTGAGGGCAATCGAAATACTATTTAAAAGTCCTA
GGTTATTGGGCTATCCGCGTATAATGTCGAATCTATCTATCAACCTTTCA
TCAATGTAAAGAGGGAAATTTGACCATAGGCAAGGCACAAAGTCGGTCGT
CTAAATTAGCCCTTAGTAAAGGATAAAAGACAAATTATGAACCTTTTCCT
GAGGCTGTCTTGGTTATACATGATGGTATTTTGTTAATATATACCAAGTT
AGCCGTAAGAGGGTCTCTGTTTTAAACTATTTGTTTATATGTGTTTTGAA
AGGTACAAGATCTTTAATTGACGGAAATAACGTCAGAATTTCTGCGTATA
TAATGAGTTTGAAGTTTTTTAATTAACTTTGGTTCGCATGTACTTTCATT
AGGCCTTAAATTAGATTTTCTGTATGACCTTAGCAGTTATGTCTCCTGAC
AATATAAGTTTTTAATAAACCGTATTATTTGCAaaagaaaattgtatttt
ttaccATAGCCTCAAACCACAAGATGTGGCCGTTATGAAATGTTTACATG
ATAAAGTCAACATCGTTCCCGTCATTGCCAAAGCTGATACATTAACCAAG
AAAGAAGTCAAAGAACTTAAACAGAGGATTCTTagagaaatttatgaaaa
tcaaattcaaatttatcAATTCCCTGAGGcggatgaagaagaagatgatg
aAGAATTTATAGCCGTTAATAAAGAATTAAAAGTAAGCCATCtctctgat
tggttgatattttgAATAACGCCTTTTGATTGGTCTGAAATGACGACAta
atttatttctcaactttccaAAATTATGATAAGTTCGGGTGATTTTGGGA
ATAAAAGCTCcttgttttcattgaaaaaaaattcaaatagcCCCCACTAC
ATTCacgctattttgaaatgttttcaatgaacctcgggacTATTAttccc
aaatcaccctccaaTCCATGTTATCTCTAGTGCTTATAGCCCAGGGGCAC
TCGATTCTATCGATGACTTAACCTTTTTGTTAAcgcttttttcttttaca
gaaTAGCGTACCATTCGCTGTAGTTGGTAGCAATACAGTTTACGAAGTGA
ATGGTAAAAAAGTCCGTGGAAGAATCTATCCATGGGGCGTTGTTGATAGT
AAGTCTTCTAGTTGTGTATCATCTTTTTTGATGAGATTTAGCATGGAACA
TTAAGcctttgaattctttttttcaagCACGACTCGATTTTTGAGCAAGA
TTTATACTGAATCTGACCATGTTTTTCAATTGTCAAATCCCAAGAAATTT
TGGTTTGACAATGAATGAATCCAGCTTGCACACAACATTGCTTACGCGCT
CATCTACTATTATTATGTATGTTATGGACAATAGATAGACGTTGAAATGA
CACCAAAAGCGCAAAAGTCGCAAAGGTTCGGATAGCGCTGCGGTACaact
actttttaaaaaaagacaaaacgaAACAGATACTTTTTTCACGAAAGACT
TCTCGCAGAGCCTCTTTTAGTCGTCCTGCTTGGCTCGTCACTCGAGTTTT
AGCGGAAATATTTTCGTTTGATTGTTAAGGGatcttttggattgttatag
gtaagtGCAGTACTCCTTCTTAAAAGAAAAGGCACCGCTTGGATTAAAAG
AACTTCTTTCTTCATTTTAGTCGAAAATCCAGCACATTGTGACTTCACCA
TGTTGAGGAATATGTTAATCAGGTAAATGAAGAACTTAATGAACAGACCT
ACCAATACGCTAAATAGCGCCAAAACGCTGGTGTATGTCCTATCGATTAG
CAGGGACTAGTGCgagcaaaatttttttatactgaaaatcaaatttttcg
caCTATTAAgtagtggagtctccataactcgaacacgcacggagaAAACA
AATTTGTCCGATATAATGAAgtttcgaattatggagattggtttttaagg
cattgttaactgaaatgaccagaaaacttgttcgagttaaggagacattc
gggttatggaggttcgagttgtagagactccactgtacttTGTTCACGAT
ATCCTCTAAATATCTAATATCTATCGGAAATATACGAACGAAATCTTACA
CCCTGATTGCTTCTAAAAATCGCAAAACTGGGGTAAAACCTCCGATAAAG
AACATCACGTAAGCTTATGCGTCAAGCCTACAAAAATCAAAGAAGCTTTA
ACTCGAAATATTTATtagatttaaaattttgctAGGAAATCTTTGTCTCT
CCCTCTGTCTGAAATTGTTTGTCCATTGCTTGTAAAAGTAAAAGTGTTGT
AGTTTTCACTTTCTAACTTTTGATCACCCTCATTTTTTAGGACGCACATG
CAAGATTTGAAAGACGTCACACAAGACACACATTACGAAAATTACAGAGC
GAAGAAATTGGCTTCAGGAGAACCACTCGAAGTATCAGAAAAGTATGTCA
CCCTTATACactctttttattttataagaacgattttataagaacaatta
ggctcaaaattgccaaaaaaataagagcaatttaagaacaatgctgagcc
tgaaataaCTCCATTTGAAGCGATTGAGAGGTCAAAGAAGTAAAAATTAG
TCTAAAATACCtcaagaacaatttgaggctaaGAACAATTTGATGCTCAA
AGTGCCGAAAAAATAAGAACTCGAGTCAGAAAaaactggttcttataaaa
aaagggtgTACATAACTATGGTTACTACTGTAACCACAAATttgcttctt
cttttttttctttttctttttttttttttNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTGGTAGTACTGTACATAAAAGATTAAAccat
tatatatttttctttttctcagtGGTGGTGGTGGTCGCGCCAGTCAAGAA
CTCGACAGTCGAGATGCACTTCTCATGGAAAAAGAGGCTGAAGTAAGTac
catttttaaagcatttcaCACAAGTAAATGTGATCCATGTAATTCCTATa
gacaccctcttctcacagacccactgggaccccttcccacaggaaaaatt
ggccaaaatatcgtccccagtggaaaattatattataatcttgtccccgc
tgaaaataatcatatAAGCAAAtgctcactgcaaaatattgtgctatttc
tttccattcccactgaattttatAGCTCGAAAACAATGAAGTTCTAATCC
CCAGCcttaaaaaatatgggaatatcaatccccgttGCGTTTTGGTCCAC
TATTTTCAACCCCTCTGGCTAAAAAAATCCTAttgagtctgtgagaaggt
ggTGTCTATAGGATAGGCCTCAGTTATATTTATTTcgacatacacgcttt
tttatttataagaacagttttaTAACTTGGTTAGTTCTTATAAGAAACGT
CAGTGTGCGTTGAAGTGTGTATTTTCTTGATCttcgttttcttcattttc
ttcatttcttcatTGTTGtaatttttactttgtttttgataatgcattat
ttttattcaaaaaaaattattttaattttttagttgaGACGTATGCAAGA
AATGATCGCCAAAATGCAAGCTTCTATGCTACAACAGCAACAAAACGTTT
CCTAGACTAGTGGCTAATCAGCTATACAATAAAGCTCAATAAAATCACGG
TATCGTATCATATTGGAGTACGTACTTGGACTATGGCAAAATTTGAAGGG
TTAATACGGAAGATACCAATATCATACGTCGAAGTTTTTTACAGGGAAAA
ACTGGTAATACATCATTGGGATATGTAATTTTAGAAATGACTTTCAAAAA
TCAGTAATTATTATCTCACAGCTTGCATTCAGCGCTGTTCCAACGTCTAT
GTAACGTTTTACTGACTTTAATATAACGCTCAAAACATTCTTCTCAGATG
TTAGGAATGAGAGGTAAAACCTAGAGTTGGCTTGAATGTAATGACGATTT
CATTAGGGATAGCAgactattttcatttttctgtctgattaagaacatgt
tcagacgttacggttccgtatcgTTCCGAAAAGAAACagaagtgtgaacg
tcaaaattcgaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037187XLOC_037187Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059042-exon-scaffold_316-1491911889:50052..50496TCONS_00059042-exon-scaffold_316-1491911889:50052..50496Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1510915933:50052..50496TCONS_00059042-exon-scaffold_316-1510915933:50052..50496Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1575043694:50052..50496TCONS_00059042-exon-scaffold_316-1575043694:50052..50496Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1491911889:51452..51560TCONS_00059042-exon-scaffold_316-1491911889:51452..51560Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1510915933:51452..51560TCONS_00059042-exon-scaffold_316-1510915933:51452..51560Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1575043694:51452..51560TCONS_00059042-exon-scaffold_316-1575043694:51452..51560Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1491911889:52144..52392TCONS_00059042-exon-scaffold_316-1491911889:52144..52392Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1510915933:52144..52392TCONS_00059042-exon-scaffold_316-1510915933:52144..52392Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1575043694:52144..52392TCONS_00059042-exon-scaffold_316-1575043694:52144..52392Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1491911889:52960..53094TCONS_00059042-exon-scaffold_316-1491911889:52960..53094Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1510915933:52960..53094TCONS_00059042-exon-scaffold_316-1510915933:52960..53094Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1575043694:52960..53094TCONS_00059042-exon-scaffold_316-1575043694:52960..53094Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1491911889:53761..53983TCONS_00059042-exon-scaffold_316-1491911889:53761..53983Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1510915933:53761..53983TCONS_00059042-exon-scaffold_316-1510915933:53761..53983Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1575043694:53761..53983TCONS_00059042-exon-scaffold_316-1575043694:53761..53983Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1491911889:54303..54399TCONS_00059042-exon-scaffold_316-1491911889:54303..54399Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1510915933:54303..54399TCONS_00059042-exon-scaffold_316-1510915933:54303..54399Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1575043694:54303..54399TCONS_00059042-exon-scaffold_316-1575043694:54303..54399Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1491911889:54922..54973TCONS_00059042-exon-scaffold_316-1491911889:54922..54973Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1510915933:54922..54973TCONS_00059042-exon-scaffold_316-1510915933:54922..54973Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1575043694:54922..54973TCONS_00059042-exon-scaffold_316-1575043694:54922..54973Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1491911889:55592..55693TCONS_00059042-exon-scaffold_316-1491911889:55592..55693Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1510915933:55592..55693TCONS_00059042-exon-scaffold_316-1510915933:55592..55693Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1575043694:55592..55693TCONS_00059042-exon-scaffold_316-1575043694:55592..55693Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1491911889:56774..56843TCONS_00059042-exon-scaffold_316-1491911889:56774..56843Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1510915933:56774..56843TCONS_00059042-exon-scaffold_316-1510915933:56774..56843Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1575043694:56774..56843TCONS_00059042-exon-scaffold_316-1575043694:56774..56843Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1491911889:57435..57965TCONS_00059042-exon-scaffold_316-1491911889:57435..57965Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1510915933:57435..57965TCONS_00059042-exon-scaffold_316-1510915933:57435..57965Clytia hemisphaericaexon
TCONS_00059042-exon-scaffold_316-1575043694:57435..57965TCONS_00059042-exon-scaffold_316-1575043694:57435..57965Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_316supercontigscaffold_316:50052..57965 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.310549	0	0	0	18.0534	17.2467	15.7533	12.1885	11.9879	7.98659	6.20554	3.7268	0.676128	1.14283	47.8679	22.4275	4.45748	3.68564	82.0886	85.6776	15.3017	27.5486	12.1177	16.4864	4.17725	3.20446	1.0287	1.95144
Blast
[Close]
BLAST of TCONS_00059042 vs. Swiss-Prot (Human)
Match: SEPT2 (Septin-2 OS=Homo sapiens GN=SEPT2 PE=1 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 1.246e-111
Identity = 174/280 (62.14%), Postives = 215/280 (76.79%), Query Frame = 1 
Query:  673 AVNRIKRTVSVSQSTVEIEEKGVKLKLTVVDTPGFGDSIDNSDSWSPIVSYIDEQYEAYLRDESGLNRRNIIDNRVHCCLYFINPCGHGLKPQDVAVMKCLHDKVNIVPVIAKADTLTKKEVKELKQRILREIYENQIQIYQFPXXXXXXXXXXFIAVNKELKNSVPFAVVGSNTVYEVNGKKVRGRIYPWGVVDIENPAHCDFTMLRNMLIRTHMQDLKDVTQDTHYENYRAKKLASGEPLEVSENGGGGRASQELDSRDALLMEKEAELRRMQEMIAK 1512
            A  +I+RTV +  STVEIEE+GVKL+LTVVDTPG+GD+I+  D +  I+SYIDEQ+E YL DESGLNRR+IIDNRVHCC YFI+P GHGLKP DVA MK +H+KVNIVPVIAKADTLT KE + LK+RIL EI E+ I+IY  P   E ++DE+F    + LK S+PF+VVGSN + E  GKKVRGR+YPWGVV++ENP H DF  LR MLI THMQDL++VTQD HYEN+R+++L            GG +   E  ++D +L+EKEAELRRMQEMIA+
Sbjct:   71 AAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLP-DAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKR----------GGRKVENEDMNKDQILLEKEAELRRMQEMIAR 338

HSP 2 Score: 107.842 bits (268), Expect = 4.494e-25
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 2 
Query:  458 YVGFANLPNQVHRKSVKRGFEFTLMVVGESGLGKSTLVDSLFLTSLYSERETLTAVNRIKRTVSVSQS 661
            YVGFANLPNQVHRKSVK+GFEFTLMVVGESGLGKSTL++SLFLT LY ER    A  +I+RTV +  S
Sbjct:   17 YVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEAS 84
The following BLAST results are available for this feature:
BLAST of TCONS_00059042 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEPT21.246e-11162.14Septin-2 OS=Homo sapiens GN=SEPT2 PE=1 SV=1[more]
back to top