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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059035 ID=TCONS_00059035|Name=TCONS_00059035|organism=Clytia hemisphaerica|type=transcript|length=5817bpRun BLAST on NCBI protein sequence of TCONS_00059035-protein >TCONS_00059035-protein ID=TCONS_00059035-protein|Name=TCONS_00059035-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1275bp MEVSKKHGGLLRHQKTVKFQIDSKYSIIETIGEGAYGVVCSAVDKSTNVTRun BLAST on NCBI transcript from alignment at scaffold_316:3612..23738+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059035 ID=TCONS_00059035|Name=TCONS_00059035|organism=Clytia hemisphaerica|type=transcript|length=20127bp|location=Sequence derived from alignment at scaffold_316:3612..23738+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_316:3612..23738+ >TCONS_00059035 ID=TCONS_00059035|Name=TCONS_00059035|organism=Clytia hemisphaerica|type=CDS|length=38280bp|location=Sequence derived from alignment at scaffold_316:3612..23738+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059035 vs. Swiss-Prot (Human)
Match: MK07 (Mitogen-activated protein kinase 7 OS=Homo sapiens GN=MAPK7 PE=1 SV=2) HSP 1 Score: 433.721 bits (1114), Expect = 4.589e-131 Identity = 216/390 (55.38%), Postives = 273/390 (70.00%), Query Frame = 1
Query: 1003 VSKKHGGLLRHQK-TVKFQIDSKYSIIETIGEGAYGVVCSAVDKSTNVTVAIKKICDVFDVPAITKRTLREIKILKHFKHDNIISIKEIVKPAT--NDFKDVYLVLDLMGSDLHHIIHSKQDLSVDHLRFFLYQLLCGLKYIHSANIIHRDLKPSNLLVKANCELKIGDFGMARSLSASPTEQKRVMTEYVATRWYRAPELMLSLHQFTKAIDVWSVGCIFAEMLGRAALFPGSNYLNQLQLILSVVGVPTLEFMSTITSERVRNYIGRLPHKEAVPLAELYPDKPKEAIDLLTKFLILDPKKRLTVVEALEHPFLAKYHNLDDEPSCRL---FEFDLESIPLERNILKEHILKEIVGYHMKRP--------KPILTPVLTSFRKPNTDV 2130
V+ K+ LL+ + V F + +Y IIETIG GAYGVV SA + T VAIKKI + FDV KRTLRE+KILKHFKHDNII+IK+I++P +FK VY+VLDLM SDLH IIHS Q L+++H+R+FLYQLL GLKY+HSA +IHRDLKPSNLLV NCELKIGDFGMAR L SP E + MTEYVATRWYRAPELMLSLH++T+AID+WSVGCIF EML R LFPG NY++QLQLI+ V+G P+ + + +ERVR YI LP ++ VP +YP ++A+ LL + L +P R++ AL HPFLAKYH+ DDEP C F FD E++ ER +KE I+ EI +H +R +P L PV + P+ ++
Sbjct: 32 VAAKNLALLKARSFDVTFDVGDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVLDLMESDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAKYHDPDDEPDCAPPFDFAFDREALTRER--IKEAIVAEIEDFHARREGIRQQIRFQPSLQPVASEPGCPDVEM 419 The following BLAST results are available for this feature:
BLAST of TCONS_00059035 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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