|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059033 ID=TCONS_00059033|Name=TCONS_00059033|organism=Clytia hemisphaerica|type=transcript|length=976bp
NTATGGTCTATGCTTGATGCGGCCAAGAATTACACAAACGAAGATgaaca
acgaccacccctacaACACCAACAACAACCACCCCTACAACACCAACAAC
AACCACACCTACAACACCAACAACAACCACACCTACAACACCCACCTCTA
CAACACCAACAAAAACCATACATACAACAATGCGTTCGTCAAAAAGCGGG
CAAATGTAATAACCCAGCATCGGCAAATTCGAAAGGAATGTGCGAGCTTT
GTTATGTACAATTTCAAGCAGCAATAGCAAACTTAAAGaaacatgtaaaa
aatcaaccaGGTATGGACGATTATTACCGTATTGGGCTATGCTTCCAATG
TAACCAAAGGCCCTCCAATGCCTCGTATGATATGTGTCGAAAATGTTTCG
AAGATAAAATTCGTAATACGAAGGCAGAAGATGATGACGTGTTCGCCAAT
AAACCAAATGATAATGCTTATGAATCGTTGGAAGATTACCGGAAACAAAA
TATCCCACCGAACGTTTCACCTAATCTCACACCGAACGTCCCACCGAACG
GTCCACCCAAAGCAGGGAGCTGTAACCAGTGCGGAAAACAGTATTTTCGT
GAAAATGCTTTCGGTTTATGTGAAGAATGTTTTGAGACCATCAAAAAGCA
ACAAGAAGAAGCCGAAGAGAAACATAAAATGTGTTGgtattgtaataaaa
atttcgcCGATGATAACGCTCTTGGCACGTGTACAGTATGCGTGACGACG
CAAGGTAATCTTATCAAAGAAGCACAAcaagaaaaacaaggaaacgGAAA
GAATCTTAACGTTGGGCGTGGAGCAGCTAACTTTAACGAACAAGCACTTC
CCCACAGCAGCCACCAGCGGCCAATGTTGATCTTTTCAGTTTACCGGACG
TTCCCCGTTTGAAAGAGATGTGCCGTTATTACGTTCTAGTCTGATGTTTT
CCCGTAAAAGAACAACTATCCGTGAg Run BLAST on NCBI protein sequence of TCONS_00059033-protein >TCONS_00059033-protein ID=TCONS_00059033-protein|Name=TCONS_00059033-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
XWSMLDAAKNYTNEDEQRPPLQHQQQPPLQHQQQPHLQHQQQPHLQHPPL
QHQQKPYIQQCVRQKAGKCNNPASANSKGMCELCYVQFQAAIANLKKHVK
NQPGMDDYYRIGLCFQCNQRPSNASYDMCRKCFEDKIRNTKAEDDDVFAN
KPNDNAYESLEDYRKQNIPPNVSPNLTPNVPPNGPPKAGSCNQCGKQYFR
ENAFGLCEECFETIKKQQEEAEEKHKMCWYCNKNFADDNALGTCTVCVTT
QGNLIKEAQQEKQGNGKNLNVGRGAANFNEQALPHSSHQRPMLIFSVYRT
FPV Run BLAST on NCBI transcript from alignment at scaffold_315:396813..397788 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059033 ID=TCONS_00059033|Name=TCONS_00059033|organism=Clytia hemisphaerica|type=transcript|length=976bp|location=Sequence derived from alignment at scaffold_315:396813..397788 (Clytia hemisphaerica)
cTCACGGATAGTTGTTCTTTTACGGGAAAACATCAGACTAGAACGTAATA
ACGGCACATCTCTTTCAAACGGGGAACGTCCGGTAAACTGAAAAGATCAA
CATTGGCCGCTGGTGGCTGCTGTGGGGAAGTGCTTGTTCGTTAAAGTTAG
CTGCTCCACGCCCAACGTTAAGATTCTTTCcgtttccttgtttttcttgT
TGTGCTTCTTTGATAAGATTACCTTGCGTCGTCACGCATACTGTACACGT
GCCAAGAGCGTTATCATCGgcgaaatttttattacaatacCAACACATTT
TATGTTTCTCTTCGGCTTCTTCTTGTTGCTTTTTGATGGTCTCAAAACAT
TCTTCACATAAACCGAAAGCATTTTCACGAAAATACTGTTTTCCGCACTG
GTTACAGCTCCCTGCTTTGGGTGGACCGTTCGGTGGGACGTTCGGTGTGA
GATTAGGTGAAACGTTCGGTGGGATATTTTGTTTCCGGTAATCTTCCAAC
GATTCATAAGCATTATCATTTGGTTTATTGGCGAACACGTCATCATCTTC
TGCCTTCGTATTACGAATTTTATCTTCGAAACATTTTCGACACATATCAT
ACGAGGCATTGGAGGGCCTTTGGTTACATTGGAAGCATAGCCCAATACGG
TAATAATCGTCCATACCtggttgattttttacatgtttCTTTAAGTTTGC
TATTGCTGCTTGAAATTGTACATAACAAAGCTCGCACATTCCTTTCGAAT
TTGCCGATGCTGGGTTATTACATTTGCCCGCTTTTTGACGAACGCATTGT
TGTATGTATGGTTTTTGTTGGTGTTGTAGAGGTGGGTGTTGTAGGTGTGG
TTGTTGTTGGTGTTGTAGGTGTGGTTGTTGTTGGTGTTGTAGGGGTGGTT
GTTGTTGGTGTtgtaggggtggtcgttgttcATCTTCGTTTGTGTAATTC
TTGGCCGCATCAAGCATAGACCATAN Coding sequence (CDS) from alignment at scaffold_315:396813..397788 >TCONS_00059033 ID=TCONS_00059033|Name=TCONS_00059033|organism=Clytia hemisphaerica|type=CDS|length=912bp|location=Sequence derived from alignment at scaffold_315:396813..397788 (Clytia hemisphaerica)
TCAAACGGGGAACGTCCGGTAAACTGAAAAGATCAACATTGGCCGCTGGT
GGCTGCTGTGGGGAAGTGCTTGTTCGTTAAAGTTAGCTGCTCCACGCCCA
ACGTTAAGATTCTTTCcgtttccttgtttttcttgTTGTGCTTCTTTGAT
AAGATTACCTTGCGTCGTCACGCATACTGTACACGTGCCAAGAGCGTTAT
CATCGgcgaaatttttattacaatacCAACACATTTTATGTTTCTCTTCG
GCTTCTTCTTGTTGCTTTTTGATGGTCTCAAAACATTCTTCACATAAACC
GAAAGCATTTTCACGAAAATACTGTTTTCCGCACTGGTTACAGCTCCCTG
CTTTGGGTGGACCGTTCGGTGGGACGTTCGGTGTGAGATTAGGTGAAACG
TTCGGTGGGATATTTTGTTTCCGGTAATCTTCCAACGATTCATAAGCATT
ATCATTTGGTTTATTGGCGAACACGTCATCATCTTCTGCCTTCGTATTAC
GAATTTTATCTTCGAAACATTTTCGACACATATCATACGAGGCATTGGAG
GGCCTTTGGTTACATTGGAAGCATAGCCCAATACGGTAATAATCGTCCAT
ACCtggttgattttttacatgtttCTTTAAGTTTGCTATTGCTGCTTGAA
ATTGTACATAACAAAGCTCGCACATTCCTTTCGAATTTGCCGATGCTGGG
TTATTACATTTGCCCGCTTTTTGACGAACGCATTGTTGTATGTATGGTTT
TTGTTGGTGTTGTAGAGGTGGGTGTTGTAGGTGTGGTTGTTGTTGGTGTT
GTAGGTGTGGTTGTTGTTGGTGTTGTAGGGGTGGTTGTTGTTGGTGTtgt
aggggtggtcgttgttcATCTTCGTTTGTGTAATTCTTGGCCGCATCAAG
CATAGACCATAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059033-exon-scaffold_315-1491911889:396813..397788 | TCONS_00059033-exon-scaffold_315-1491911889:396813..397788 | Clytia hemisphaerica | exon |
| TCONS_00059033-exon-scaffold_315-1510915933:396813..397788 | TCONS_00059033-exon-scaffold_315-1510915933:396813..397788 | Clytia hemisphaerica | exon |
| TCONS_00059033-exon-scaffold_315-1575043694:396813..397788 | TCONS_00059033-exon-scaffold_315-1575043694:396813..397788 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_315 | supercontig | scaffold_315:396813..397788 . |
Blast
The following BLAST results are available for this feature:
|
