TCONS_00059024 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059024
Unique NameTCONS_00059024
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length608

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059024 ID=TCONS_00059024|Name=TCONS_00059024|organism=Clytia hemisphaerica|type=transcript|length=608bp
ACTAGAAATACTGCTAATTAATTTATAAAGATTCAAATATATCTACTGCT
AGGAATTGATTGCTCTAgtataaatttcatttcaatacgANACGATTTTA
AACACGATCTAGCAGTGGTGTTAAGTTGGAGTAAATCAGATCTTGAAAGA
TCACATAGCTCTAAGCCATATAGCAGTTTCGGAATAATGATTGAATAGAA
TATCGTGACAATTGCGTTGGGGTGGCAGTGTCGTATACCAGCAGAGATCA
GGATGTGGAAGTGGACTAGAGTTCAGATAGGCGTTGGTCCCTGTGAGCAT
TGAGGCTGAGTTTGTCAGGTTCCAGCAGAAACCAAGGTGGGTAAGCTCTC
GCTTGGGGAGAATTGGTAGGTTGTTCAAGGTAAGCGATGGGTTTGGGAGG
TTCGATGTACCCGAGATGATAAACTGAGTTTTCGTTTTCGACTTAGAGTG
GCAGAACTTGATACCGTTCTTCTGACCAAATGTTTCACAGTGGGAGAGCA
TCATCTGAAGTTTACTAAGACACGGACTGAGCAGGATGATGTCATCAGCA
TATACAATAATTGCTGAATGGAAGTCATTTGGAAGAAATGTGCCAACTTT
CAATCGCT
Run BLAST on NCBI

protein sequence of TCONS_00059024-protein

>TCONS_00059024-protein ID=TCONS_00059024-protein|Name=TCONS_00059024-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
RLKVGTFLPNDFHSAIIVYADDIILLSPCLSKLQMMLSHCETFGQKNGIK
FCHSKSKTKTQFIISGTSNLPNPSLTLNNLPILPKRELTHLGFCWNLTNS
ASMLTGTNAYLNSSPLPHPDLCWYTTLPPQRNCHDILFNHYSETAIWLRA
M
Run BLAST on NCBI

transcript from alignment at scaffold_315:246582..247189

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059024 ID=TCONS_00059024|Name=TCONS_00059024|organism=Clytia hemisphaerica|type=transcript|length=608bp|location=Sequence derived from alignment at scaffold_315:246582..247189 (Clytia hemisphaerica)
AGCGATTGAAAGTTGGCACATTTCTTCCAAATGACTTCCATTCAGCAATT
ATTGTATATGCTGATGACATCATCCTGCTCAGTCCGTGTCTTAGTAAACT
TCAGATGATGCTCTCCCACTGTGAAACATTTGGTCAGAAGAACGGTATCA
AGTTCTGCCACTCTAAGTCGAAAACGAAAACTCAGTTTATCATCTCGGGT
ACATCGAACCTCCCAAACCCATCGCTTACCTTGAACAACCTACCAATTCT
CCCCAAGCGAGAGCTTACCCACCTTGGTTTCTGCTGGAACCTGACAAACT
CAGCCTCAATGCTCACAGGGACCAACGCCTATCTGAACTCTAGTCCACTT
CCACATCCTGATCTCTGCTGGTATACGACACTGCCACCCCAACGCAATTG
TCACGATATTCTATTCAATCATTATTCCGAAACTGCTATATGGCTTAGAG
CTATGTGATCTTTCAAGATCTGATTTACTCCAACTTAACACCACTGCTAG
ATCGTGTTTAAAATCGTNTcgtattgaaatgaaatttatacTAGAGCAAT
CAATTCCTAGCAGTAGATATATTTGAATCTTTATAAATTAATTAGCAGTA
TTTCTAGT

Coding sequence (CDS) from alignment at scaffold_315:246582..247189

>TCONS_00059024 ID=TCONS_00059024|Name=TCONS_00059024|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_315:246582..247189 (Clytia hemisphaerica)
CGATTGAAAGTTGGCACATTTCTTCCAAATGACTTCCATTCAGCAATTAT
TGTATATGCTGATGACATCATCCTGCTCAGTCCGTGTCTTAGTAAACTTC
AGATGATGCTCTCCCACTGTGAAACATTTGGTCAGAAGAACGGTATCAAG
TTCTGCCACTCTAAGTCGAAAACGAAAACTCAGTTTATCATCTCGGGTAC
ATCGAACCTCCCAAACCCATCGCTTACCTTGAACAACCTACCAATTCTCC
CCAAGCGAGAGCTTACCCACCTTGGTTTCTGCTGGAACCTGACAAACTCA
GCCTCAATGCTCACAGGGACCAACGCCTATCTGAACTCTAGTCCACTTCC
ACATCCTGATCTCTGCTGGTATACGACACTGCCACCCCAACGCAATTGTC
ACGATATTCTATTCAATCATTATTCCGAAACTGCTATATGGCTTAGAGCT
ATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037175XLOC_037175Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059024-proteinTCONS_00059024-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059024-exon-scaffold_315-1491911889:246582..247189TCONS_00059024-exon-scaffold_315-1491911889:246582..247189Clytia hemisphaericaexon
TCONS_00059024-exon-scaffold_315-1510915933:246582..247189TCONS_00059024-exon-scaffold_315-1510915933:246582..247189Clytia hemisphaericaexon
TCONS_00059024-exon-scaffold_315-1575043694:246582..247189TCONS_00059024-exon-scaffold_315-1575043694:246582..247189Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_315supercontigscaffold_315:246582..247189 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.127551	0	0	0.279451	0	0.223984	0.114316	0	0	0	0	0.442486	0.172288	0	0.329497	0.83726	0	0.374504	0.232006	0.122507	0.238509	0	0.16699	0	0	0.26092	0	0.34493	0.42062	0.292041
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059024 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top