TCONS_00059007 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059007
Unique NameTCONS_00059007
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059007 ID=TCONS_00059007|Name=TCONS_00059007|organism=Clytia hemisphaerica|type=transcript|length=430bp
ACTTTCTGCTGACGAAAAAGAATTGGATAATCAATAAAAATCATCACttg
ACCCCAAGTTTTCCTCCCAATCTTCACGAACTTGCAAACGAATGAAAGCA
TTGAACAACATCTGCTCAGCATGTCGATTTGACGTCCTCTTTCTAACCTC
CTTGAAGAAATGGAATGCACGCTCTTCGGCCTCCGCTTTACAGGACGACA
AGTTGATGATACGGAACTGCTGGGATGCGTGGCTAATCAAGGCGTGGTAA
TACTGTCCGAAAAGCTTTCTCTCTGTCATACCCCTTGGAATCTTGATCAA
CGGTACAACATCTAGAGCATGCAGGAACGTTAAATTGTGGAATCGGAGGA
TAGTTTTCGATGTTCTATCCTTTTCCTCGGCATACATAATCTCTTGGATT
TCACACAATTGTCGAAGAATTTTGAGGTAT
Run BLAST on NCBI

transcript from alignment at scaffold_315:257819..266957-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059007 ID=TCONS_00059007|Name=TCONS_00059007|organism=Clytia hemisphaerica|type=transcript|length=9139bp|location=Sequence derived from alignment at scaffold_315:257819..266957- (Clytia hemisphaerica)
ACTTTCTGCTGACGAAAAAGAATTGGATAATCAATAAAAATCATCACTTG
GTCAGATGACGGGAACACAAGTTATTTTTGTGATTTTGTCCTTTATTATT
CCAGGTGTACCCAATCGATGAAATTGATACGGGAAATCAATCGATATTAA
TCGATTTTAATCGATAATAATCGATTTTAAAAATCGATAATAATCGATAG
TGAGCGATAACTAATCGATAAACAATCGATAGCCAATCCATACTAAGACT
TTACGTTCTTATCGATTGGATTTGATTGCTATCTATTAATCGCTAATTGC
TTTCGATTGTTATTGATTAATATCGATTTCTTTATATTCCCTAAAAATGC
AGCCCTACTGTGGTTTTTCTAATTTAACGCGAGGCAATAAATAATTATTT
TTGACGCTACGCGTGAAAAACTAGAGAACAATTAATTACGATATTCAAGT
GTTTTAAGTACGCGTTAAAGGCTTGTGTAATACATATAGATCGTATAATG
TATTAACAAGCATTAGCTGATTTGGAGGAGCCAGAGGAGGATGACGAAGA
TCCCTTTAATTTGTGTTTTTGAAAGAAAGAAGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGATTTTTCGCC
AAAAACAGGGTACGCGTTAAATTAGACTACGCGTTAAATTAGAAAAACCA
CGGTACATGGTATTTGGCCATTCCTATTCCCCTGTGCATTAATCTGATTA
ATACAGTGATTTGTTTGTGTGATTCTACCCAAGCCCTGGTCGCCTTACTC
TAGCCTTTATTTTAGCCTTACTCTAGCCTTTATTTCAGCCTTAATTCACA
TTATCAGGGGCTTTCATCGAGTTTCAAGCCCGAAGGGCTAGAGTAAAGGC
GAATCTTTAACCCATCTCAGGCAACATAAATTGAACCACTTATTATTTCC
CATCCAAAACTCATCATTAAGATGGATTATATCTAGTGGTTCCTTTGTTT
TAGAGGACTACGCTTGTTGAAATCTAGCGATAGATTTTAGTTTTAATCTG
GCGTTTGTATGAAAACCACGCGCGGGCGTTTTGGATGGGAAATAAGTGGT
TTCATTTCCCATCCAAGATTCTTGACTCTCCCTTTGGGCTAGAACTCAAT
GAATACCCAGCCTTCTAATTTTTTAAAAAAATTGGTACCCCTTTTATACA
TTTGTATACCTCTTCGGGTAGCTTATTCTCACATTCTGATATTCACTGAG
GAAACAAGACGCTAATTATAACCTCGAATAAGTACAAAACGATGATTTTT
GGCACTGCAAGAGATCATATATAGCCTGTACACAAACCCGATTTCTATGG
ATAATTTCAAAATTCATTGTCGTACTATATACTTATATATCTACTAAGGG
AAGAAATTTTAAAAAATCACCCGAAAATTGGTATTTTTAGGGCAAAATAG
GCCATATTATGAACAGAAAATTCTCTCAACCGCGAAATTAAATTCCCGCG
AAACTTCAGAATTTTAAATTCTGCGAAAATTTCTTCCCGCAAAAATTTCT
TCCCTTAATAAAGTACGCTACGATATTATCGTGAGATACACTCTGGTACA
CAGAGTAGCGATCATACATACAGAAAATTAGCACAATCGATCGCAATCGA
TCTTAATCGATAACAATCGAATTCAATCGATGGCTAATCGATAATAATCA
AATTTAATTGATGAAATTTTACGTTCCTATCGATTGGCCATCGATTAGTA
ATCGATCGATCATCGATTACGAACGACTTTTATCGATTGACATTATAATT
AAATCGACAATCGATGTTATCGATTGGGTACGCCTGGATTATTCTAATAA
ACATTGATCGATATATCGATATATATATATCGAGTATTCTAATAAACATT
GATCGATATATCGATATATCGAGTGGGAGAACCTGGTTTTAAGAAGGGCA
GTACCCGGTTTGTCTGATAACCAGGTGCTTAAAAGGCACAACAAATGGTC
TGCAATTGCTGTTTCATGATTAATATCTAAAAGTCAGAAATTGCAGCATA
TCTTTGTTTGCATTCTTTTCTAGCCAGCAATACACTGATACACAGCAAAA
CGTTTAGTTTGATTATATTGGTCATCTGGTTGATGGCATAGTTTGTTCAA
TAGCTTCAAAAAGGGAAACGAGTTGATTATAAACATATCATAAAATCAAA
ACAAACACAAAAAGCAATCATTGGCGTGCTACAAAAATGTTTAAAAATAT
GTATGCTTACACACAGGATAAGATGTATGGCCATTTGCGATTTGGAACCC
AAGTGGATGGCTCTTTCATTATTTAAAATGTATACTCCATGACGAATGAA
ACATTTTGTTTTGAATAAATTCCTAATCAATTGGCAGTTCTCCACCATTT
CCACTGAGTTCATAATAGATCAAATCAAATATCGGTAACTTCTTCATCTA
ACGCTCCTATTACATTAAGGAGATAATACTCTTATACAATATTCCTATCA
TTTTGCTCATTCCCGTATTCCCTTTATTCCCATATTCCCTCATCCCCCTT
ATTCCCATATTCCCATAATTCACCATATTCCCATTATTCCCTTATTCCCC
ATATTCCCTTATTCCCCATATTCCCTTATTCCCATATTCCCTTATTCCCC
TTATTCCCCATATTCCCATATTCCCCATATTCCCATATTCCTCATATTCC
CTTATTCCCTTATTCCCATATTCCCTTTATTCCCATATTCCCTTATTCCC
CATATTCCCATATTTCNCCATATTCCCATATTCCCATATCCCCATATTCC
CATATTCCCTTATTCCCTTTATTCCCATATTCCCATATTCCCATATTCCC
ATATTCCCTTTATTCCCGTATTCCCTTATTCCCTTTATTCCCATATTCCC
ATATTCCCTTTGGCTTTATTCCCATATTCCCTTATTCCCTTATTCCCATA
TTCCCATATTCCCATATCCCCATATTCCCATATTCTCTTATTCCCTTTAT
TCCCATATTCCCTTATTTCTTCTTTTATTCCCATATTCCCTTATTCCCTT
AATTCCCTTATTCCCTTTATTCCCATATTCCCATATCCCCATATTCCCAT
ATTCCCTTATTCCCTTAATTCCCTTATTCCCTTTATTCCCATATTCCCAT
ATTCCCTTATTCCCTTTATTCCCTTATTCCCTATTCCCATATTCCCATAT
CCCCATATTCCCATATTCCCTTATTCCCTTTTCCTTATTCCCTTATTCCC
TTTTCCCATATTTCCCATATTCCCATATTCCCATATTCCCTTTATCCCCA
TATTCTCCTTATTCCCATATTCCCTTTATTCCCGTATTCCCTTATTCCCT
TTATTCCCATATTCCCTTATTCCCTTAATTCCCATATTCCCATATTCCCA
TATTCCCTTATTCACTTTATTCCCATATTCCCTTATTCCCTTTATTCCCA
TATTCCCTTATTCCCTTTATTCCCTTATTCCCATATTCCCATATCCCCAT
ATTCCCTTATTCCGCATATTCCCATATTCCGCATATTCCCGTATTCCCTT
ATTCCCCATATTCCCATAATTCCCCATATTCCCATTATTCCCATATTCCC
CATATTCCCTTATTCCCTTATTCCCATATTCCCTTTATTCCCATATTCCC
TTATTCCCCATATTCCCATATTCCCTTTATTCCCGTATTCCCATATTCCC
TTTATTCCCATATTCCCTTATTCCCCATATTCCCCATATTCCCATATTCC
CTTTATTCCCGTATTCCCTTATTCCCCATATTCCCATATTCCCCATATTC
CCTCATCCCACTTATTCCCATATTCCCATAATTCCCCATATTCCCATTTT
CCATATTCCCTTATTCCCTTTATTCCCATATTCCCTTATTCCCTTTATTC
CCTTATTCCCATATTCCCATATTCCCATATTCCCATATCCCCATATTCCC
ATATTCCCTTATTCCCTTTATTCCCATATTCCCTTATTCCCTTTATTCCC
TTATTCCCATATTCCCATATTCCCATATTCCCATATCCCCATATTCCCAT
ATTCCCTTATTCCCTTTATTCCCATATTCCCTTATTCCCCATTTCCCATA
TTCCCATATTCCCATATTCCCTTTATCCCCATATTCTCCTTATTCCCATA
TTCCCTTTATTCCCGTATTCCCTTATTCCCTTTATTCCCATATTCCCTTA
TTCCCTTAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCCATATTCCCATATTCCCATATCCCCATAT
TCCCATATTCCCTTATTCCCTTTATTCCCATATTCCCATATTCCCATATT
CCCATATTCCCATATTCCCTTTATTCCCGTATTCCCTTATTCCCTTTATT
CCCATATTCCCATATTCCCTTTATTCCCATATTCCCTTATTCCCTTATTC
CCATATTCCCATATTCCCATATCCCCATATTCCCATATTCCCTTATTCCC
TTTATTCCCATATTCCCTTATTTCTTTTATTCCCATATTCCCTTATTCCC
TTTATTCCCTTATTCCCATATTCCCATATTCCCATATTCCCATATCCCCA
TATCCCCATATTCCCTTATTCCCGTCTTCCCCATATTCCCTTATTCCCTT
TATTCCCATATTCCCTTATTCCCTTTATTCCCATATTCCCTTATTCCCTT
TATTCCTATATTCCCTTATTCCCTTTATTCCCTTATTCCCATATCCCCAT
ATTCCCATATTCCCTTATTCCCTTTATTCCCATATTCCCTTATTCCCCAT
TTCCCATATTCCCATATTCCCTTATTCCCTTTATTCCCTTATTCCCATAT
CCCCATATTCCCATATTCCCTTATTCCCTTTATTCCCATATTCCCTTATT
CCCCATTTCCCATATTCCCATATTCCCATATTCCTTTTATCCCCATATTC
TCCTTATTCCCTTATTCCCTTTATTCCCTTATTCCCATATTCCCATATCC
CCTTATTCCCTTTATTCCCATATTCCCTTATTCCCTTTATTCCCATATTC
CCTTATTCCCTTATTCCCTATTCCCATATTCCCATATCCCCATATTCCCA
TATTCCCTTATTCCCTTTATTCCCATATTCCCTTATTCCCTTTATTCCCA
TATTCCCTTATTCCCATATTCCCATATTCCCATATTCCCATATCCCCATA
TTCCCATATTCCCTTATTCCCTTTATTCCCATCTTCCCTTATTCCCTTTA
TTCCCATATTCCCTTATTCCCTTTATTCCCTTCTCTCTCCCGCCCCATTT
TCCATATTCCCTTTCTTCCCATATTCCCTCTCTCCCCATATTCCCATATT
CCCTCTCTTCCCATTTTCCCTCTCTCCCCATATTCCCATATTCCCTCTCA
CCCCATATAATTCCCATATTCCTTTTCTCCCCATATTCCCATATTCCCCA
CATTCCCGCTCTCCCCATAGTCCCGTTCTTCCCATATTCCTTCTCTCCCC
ATATTTCCCTCTCTTCCCATATTCCCTCTCTTCCCATATTCCCTCTCTCC
CCATATTCCCATATTCCCCATATTCCCTCTCTCACCATATTCCCTTTCTT
CCCATATTTCCGTATTCCCTTTCTCCCCATATTCCCAAATTCCCTTTCTC
CCAGTGTTCCCTCTCTCCCGCATATTCCCTTCCTCCCCATGTATTCTCGT
ATTCCCTTTCTCCCAATATTCCCTCCTCCGGCGCTAAAAAGGCCGGGTCA
GATATGTTTTCTATTCCTATAGTTCCGTAATTGTTCCGGTTACTAAAAAT
ATAGCGGTTACCCCCGCTTTACTTGACGGCCTCAAGCTCACAACTGTGTT
CCGGTTGCGGTCTGCACTTTGTATTTTCTTTGAAAGTTTCAAACAGAGAA
AATGGCGGAAAATGCAGTTGATTTTTTAAATTAACTAAAGTTCTTCATCC
ACCATAATCAAGTGAATATTTGATGGATTTAGTGGAAGTCTCCAATCACT
GTTACGATGGAGATGTTTTGCAATNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GTCTGGTTTGAGTAGGTCTGCATGTTTGCTGATAAGATTTCTTCTCTCTA
TCCTCACAGACCCCAAGTTTTCCTCCCAATCTTCACGAACTTGCAAACGA
ATGAAAGCATTGAACAACATCTGCTCAGCATGTCGATTTGACGTCCTCTT
TCTAACCTCCTTGAAGAAATGGAATGCACGCTCTTCGGCCTCCGCTTTAC
AGGACGACAAGTTGATGATACGGAACTGCTGGGATGCGTGGCTAATCAAG
GCGTGGTAATACTGTCCGAAAAGCTTTCTCTCTGTCATACCCCTTGGAAT
CTTGATCAACGGTACAACATCTAGAGCATGCAGGAACGTTAAATTGTGGA
ATCGGAGGATAGTTTTCGATGTTCTATCCTTTTCCTCGGCATACATAATC
TCTTGGATTTCACACAATTGTCGAAGAATTTTGAGGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037159XLOC_037159Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059007-exon-scaffold_315-1575043694:266908..266957TCONS_00059007-exon-scaffold_315-1575043694:266908..266957Clytia hemisphaericaexon
TCONS_00059007-exon-scaffold_315-1575043694:257819..258198TCONS_00059007-exon-scaffold_315-1575043694:257819..258198Clytia hemisphaericaexon
TCONS_00059007-exon-scaffold_315-1510915933:266908..266957TCONS_00059007-exon-scaffold_315-1510915933:266908..266957Clytia hemisphaericaexon
TCONS_00059007-exon-scaffold_315-1510915933:257819..258198TCONS_00059007-exon-scaffold_315-1510915933:257819..258198Clytia hemisphaericaexon
TCONS_00059007-exon-scaffold_315-1491911889:266908..266957TCONS_00059007-exon-scaffold_315-1491911889:266908..266957Clytia hemisphaericaexon
TCONS_00059007-exon-scaffold_315-1491911889:257819..258198TCONS_00059007-exon-scaffold_315-1491911889:257819..258198Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_315supercontigscaffold_315:257819..266957 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.70597e-06	6.72475e-06	0	5.11248e-06	0.00151785	0.000584488	0.000766246	0.000216808	14.9185	0.000512861	0.00057376	0.000172483	13.9056	9.05658e-06	1.88743e-05	0	11.1135	9.85363	0.000125673	4.44968e-05	3.99569e-05	0	0	0	0.000164084	0.000166646	0	5.12407e-05	2.5101e-05	0.000128156
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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