TCONS_00059005 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059005
Unique NameTCONS_00059005
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059005 ID=TCONS_00059005|Name=TCONS_00059005|organism=Clytia hemisphaerica|type=transcript|length=1404bp
cgcTGTCCtgatgaaatatgtgtctgatatgaaacgggaacacttattta
aaattaaaacctttaaCACCAGAGATTGGAGAAATACGATATCTGAATTT
CATGTTTAATTACGAGACATATATTTCTTTATGTTTCAAATTTAATTACA
ACGTGGTCAAAATAATAACAAGCTTTGATAAACATGAcaagaaaacattt
aaaatttgcCCCTACCCTCActccaacctcgttccctgcgtattatcaga
tTTTTGATGCATACTGATAGCGCCAGAtaatatacaccttttcgaccgta
gccaccaattgccgcgcgggcattttttgtccactttatccaactaaaac
cgtcccagtcttttttgacacatttttatattgtctataggtgcgaaaaa
aggactgggacggttttagtgggataaagcggaaaaaaatgcccgcacag
caattggcggctacggtcgaaaagatgtattCTCTAGTGTCCATAAGTAA
GGtgaataaagcctgggatacacaggGACGAGGTTGTCTTTTACTCATAT
AAATGCATTCGTTGATTTCTTCACTAGTTTTTTAGTCACAGACAAGCATT
TGGATAATATATTGTATCCAATAACATCCAATGTTCTCCATACAGATTTC
ATCTTCCATCGGGAAATCTGCATAAGGACAAGATTCGCCATCTCTTCGAC
GAAGCCCATCGATACAACTTTGGGTTGTTTGTATCCAGCAACTAGTGACA
TTACTATTTGGTGGAGATACCGCACGCCGATTTCTTCCCAATCTTGAAAT
TCTCGAAATCTTGTCTTTGGAAACGTCACGTCGCAATCTTTCTAATTTGT
GGTATCCTTTTGCCGAAAGACTTTCGCTTCTTTTGGTATTCGTTGATAAC
ACTTTGGAGATCTGGTAtacattttgtttttgattcatCGAAGGTTCTGA
TGTCGTCGTTATTTTAGCAAATCGATCTATTTCATTTCCCAATTTTGCTA
TCTTTTCATATAGCAAAGGCTCTGATGTTGTCGTTTTCACATTGGAATCT
GTTTCTGGTTCCAATTTTCCAGTTTTCTCGATTGGTTCTTCGATGCCACT
ATGTGTTTTTGATTCACCACCAAAAGATTCAATCCCAACAGAAGTTGGTT
CTTCATTATCAACACAATGCTGTATAGCTTGCTCTCGACAGAATTGTCGG
GTTTCCTCTGGTATTTCTTCGTAAGCTGAAACCCCATGGCTCACAAAAAT
ACAGAGAGCAGTCAGCAGAATAGTGTGGTATGACTTCATAGCTGAGCCTT
TGTAAATTAAAATCTTGCTGCCActcttcttgaaagaatgtctCGAAAGA
TAGTAAATAAGCGAGTAAATCTTCCCTCAATTTATGTGTTTTCATTCTAA
TGGG
Run BLAST on NCBI

transcript from alignment at scaffold_315:230944..232347-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059005 ID=TCONS_00059005|Name=TCONS_00059005|organism=Clytia hemisphaerica|type=transcript|length=1404bp|location=Sequence derived from alignment at scaffold_315:230944..232347- (Clytia hemisphaerica)
CGCTGTCCTGATGAAATATGTGTCTGATATGAAACGGGAACACTTATTTA
AAATTAAAACCTTTAACACCAGAGATTGGAGAAATACGATATCTGAATTT
CATGTTTAATTACGAGACATATATTTCTTTATGTTTCAAATTTAATTACA
ACGTGGTCAAAATAATAACAAGCTTTGATAAACATGACAAGAAAACATTT
AAAATTTGCCCCTACCCTCACTCCAACCTCGTTCCCTGCGTATTATCAGA
TTTTTGATGCATACTGATAGCGCCAGATAATATACACCTTTTCGACCGTA
GCCACCAATTGCCGCGCGGGCATTTTTTGTCCACTTTATCCAACTAAAAC
CGTCCCAGTCTTTTTTGACACATTTTTATATTGTCTATAGGTGCGAAAAA
AGGACTGGGACGGTTTTAGTGGGATAAAGCGGAAAAAAATGCCCGCACAG
CAATTGGCGGCTACGGTCGAAAAGATGTATTCTCTAGTGTCCATAAGTAA
GGTGAATAAAGCCTGGGATACACAGGGACGAGGTTGTCTTTTACTCATAT
AAATGCATTCGTTGATTTCTTCACTAGTTTTTTAGTCACAGACAAGCATT
TGGATAATATATTGTATCCAATAACATCCAATGTTCTCCATACAGATTTC
ATCTTCCATCGGGAAATCTGCATAAGGACAAGATTCGCCATCTCTTCGAC
GAAGCCCATCGATACAACTTTGGGTTGTTTGTATCCAGCAACTAGTGACA
TTACTATTTGGTGGAGATACCGCACGCCGATTTCTTCCCAATCTTGAAAT
TCTCGAAATCTTGTCTTTGGAAACGTCACGTCGCAATCTTTCTAATTTGT
GGTATCCTTTTGCCGAAAGACTTTCGCTTCTTTTGGTATTCGTTGATAAC
ACTTTGGAGATCTGGTATACATTTTGTTTTTGATTCATCGAAGGTTCTGA
TGTCGTCGTTATTTTAGCAAATCGATCTATTTCATTTCCCAATTTTGCTA
TCTTTTCATATAGCAAAGGCTCTGATGTTGTCGTTTTCACATTGGAATCT
GTTTCTGGTTCCAATTTTCCAGTTTTCTCGATTGGTTCTTCGATGCCACT
ATGTGTTTTTGATTCACCACCAAAAGATTCAATCCCAACAGAAGTTGGTT
CTTCATTATCAACACAATGCTGTATAGCTTGCTCTCGACAGAATTGTCGG
GTTTCCTCTGGTATTTCTTCGTAAGCTGAAACCCCATGGCTCACAAAAAT
ACAGAGAGCAGTCAGCAGAATAGTGTGGTATGACTTCATAGCTGAGCCTT
TGTAAATTAAAATCTTGCTGCCACTCTTCTTGAAAGAATGTCTCGAAAGA
TAGTAAATAAGCGAGTAAATCTTCCCTCAATTTATGTGTTTTCATTCTAA
TGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037157XLOC_037157Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059005-exon-scaffold_315-1575043694:230944..232347TCONS_00059005-exon-scaffold_315-1575043694:230944..232347Clytia hemisphaericaexon
TCONS_00059005-exon-scaffold_315-1510915933:230944..232347TCONS_00059005-exon-scaffold_315-1510915933:230944..232347Clytia hemisphaericaexon
TCONS_00059005-exon-scaffold_315-1491911889:230944..232347TCONS_00059005-exon-scaffold_315-1491911889:230944..232347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_315supercontigscaffold_315:230944..232347 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.79338	1.72813	0.0193336	3.60845	0.045128	0.116722	20.4471	19.5656	39.1085	36.1874	19.4542	29.5122	0.504415	0	0	8.96859e-09	0.838355	0.450238	0.534829	1.14038	0.032419	0.0030655	2.44468	2.57101	0.164325	0	21.0477	27.1408	1.32544	1.22764
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059005 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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