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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058994 ID=TCONS_00058994|Name=TCONS_00058994|organism=Clytia hemisphaerica|type=transcript|length=1628bp
AGTAACTATTCAAGCCATGCTGTGTACAATGTTACTGAGCCCCCCCTGAG
CCCTTTGGGGCTTTGGACATGCTGCCAAATTTGATTTACCGGCTCTGGAG
AAACAAGCCTAGAAACACAGATAAGAAGAAACGAAACAGTGCTTTGTTGT
TGTTCGTTGTATTATATTCGGTAGTTGGACGTGAAATATTTTGCAATGTG
AAGATGAGCGATGGTGGAAATGTAAAGATTGTCATCGTTGATCAACATCA
CGAAGTGATTCCTCATTGGTACCAAGCAATCAACGATGGTAAAATCTCAT
CCAACAAAAATACACTGATTCATTTCGATGCACATTCAGACATGGCTACA
CCAGAGAATTTTGAGATGTTAGAGGAAACATTACAACATCCAAACGAAAA
GCTTCACAAAAATGCGTCTCTCTTATTCCCACTCATGCAAGCAAACGACC
GTTTCATTACTTCCGCTGTTTTNCACGTCCCTCTTATTCCCACTCATGCA
AGCAAATGACCGTTTCATTACTTCCGCTATTTTAACCGGTCTTGTTGACC
GTGTCATATGGGTGCAACCGGATTGGCTCAGTCAGGATTTGGCGGAGATA
CAAGTTGGATATGTAGGGTACACTATCAATAAACATGACCcgaaagaaac
aaaaacttcTTGTATGTGTAACAAGGATTATcgaaaatcagataaaaatt
tcAGTAAATGGCTTTGTTTTTACTTAGCAGCAGCTGTTGAAAATCAAACA
GTTTTTGTGAGTCAAGAGAATTGTCTTAAGGTCCAACCAATGAGATTTTT
TATGTTCAGCGAAACTGTTTTCAAACGCGTGTTTCAGGTCGATTCCCTGA
AAGCTGGTCATGTGATCATCGATATTGATGAAGATTATTTCGGGGTGGAG
GGCGGCGTCCAAAAAATGATTGATGGCGGGATTCCAAAGGAAGTAATAAC
AAATATTGATAATCTAATGCCTGACTTGTTTTGtgtcaattccataatgg
cggaacaGCGATTGAACAAAGCGGTTCAAACCATGTTTTACGAACTGTAT
ATTTCTTCTGAGAAACCCACTTTGAAACATTTAAAAGAAAGGGTGATGAA
ACATACTCAAAAGTATTTCTGCGGACGAAACGATGCACTTACTCTCAAAA
GGTTCACAAATTATCTTCAAAAACATacgaataaagaaatattaaaagCG
CTTGCTTCAACAAAATATTGCTTATTCGAAAGCTTGCAACTACAGATAGA
CAAAAGACTGGACGCTGGCCATGAATTTGCATTATGCCATGGAACAATTT
ATCCTGAAAACACTTTAAATGATTTATTCACTGACTCCAAAACTGGAATT
GAGACCCGTCGTGATAATTTGTCTAAAATGTTGGACTTTATTTACGCGAG
TACGCGACCACGTTTAATCACGATTGCACGTTCTTTACGTGACGGTTACG
TGCCCCGTGAGCAACAAAGATTCATTGAACGTAACGTACGTAAAGCAGTT
GACCTAACTTTGAGGAAATTGAAAATGACTTCtcaaactatttttgatga
gaatctagtttttggtgaaaaaggCTGGGTGTAAAGTTTTAACGTTTTCG
ATTGTTTTACacctatttttatatttta Run BLAST on NCBI protein sequence of TCONS_00058994-protein >TCONS_00058994-protein ID=TCONS_00058994-protein|Name=TCONS_00058994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
MRLSYSHSCKQTTVSLLPLFXTSLLFPLMQANDRFITSAILTGLVDRVIW
VQPDWLSQDLAEIQVGYVGYTINKHDPKETKTSCMCNKDYRKSDKNFSKW
LCFYLAAAVENQTVFVSQENCLKVQPMRFFMFSETVFKRVFQVDSLKAGH
VIIDIDEDYFGVEGGVQKMIDGGIPKEVITNIDNLMPDLFCVNSIMAEQR
LNKAVQTMFYELYISSEKPTLKHLKERVMKHTQKYFCGRNDALTLKRFTN
YLQKHTNKEILKALASTKYCLFESLQLQIDKRLDAGHEFALCHGTIYPEN
TLNDLFTDSKTGIETRRDNLSKMLDFIYASTRPRLITIARSLRDGYVPRE
QQRFIERNVRKAVDLTLRKLKMTSQTIFDENLVFGEKGWV Run BLAST on NCBI transcript from alignment at scaffold_315:112185..115509- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058994 ID=TCONS_00058994|Name=TCONS_00058994|organism=Clytia hemisphaerica|type=transcript|length=3325bp|location=Sequence derived from alignment at scaffold_315:112185..115509- (Clytia hemisphaerica)
AGTAACTATTCAAGCCATGCTGTGTACAATGTTACTGAGCCCCCCCTGAG
CCCTTTGGGGCTTTGGACATGCTGCCAAATTTGATTTACCGGCTCTGGAG
AAACAAGCCTAGAAACACAGATAAGAAGAAACGAAACAGGTACTTCTTTG
AGAAACTTATTTTCAGGCTTCCTTATATATAAATTATATAATTTCGCAAT
TGCAATTTACTTCCTCCTTAGAAATGTGAACTCTAAATGGTTTCGCTTAC
AGATATTATATTTCTATTCCCGTGGAAGTGTGTCCAGTTTTAAAGTCGAC
CACACTCTTTTTTTATAAAAATGATATCTTTCCAATTCATCATGAGTATT
CTTAACTTTTTGGGAAACATCATTCTGAAATATTCTTATGGTATTCTTCG
GTTTGTATCCAAACCCAGCCAATATCTAACTTGTAACACATACACGCTTT
TTTTAATAAAATTAGTGTACTTTGGCTGAGGGTGAGCATTATTCTTATTT
TTCTATTGTTCTAAACAATAGGCCTATTGTTTTAACTCTAAAATCTCACC
CTGATATTCTTATAAAAAAGAAAGCGTGTACCTCAAGCATAGATCTCACA
ATTTTGTGGAATTACAGGTGAATAATTGAAATTACATTATTAGATTCAGT
TGCCAAATTCCATGATGCCGGTATTCTTATCATTATTCTTAATTTTTTGG
TCAATTTTCAAAATAAAATTTCTTATAAAGTTTATTCTTATAAAAAAATA
GTGTAGCCCTGCTGTTTTGTTCTCTAAGTTACTTTAGAGATCTTCGAAGT
TTCGAAATTCAAAATAGTAATGGTGGACTATTCAGCTTTAAAACTGAATC
TGCTTCTTTTTATATGAGAAGCCCAATCCAGCCGAGTAGTTAAAGATCAG
TTGTTCACTAAGCGCAAACGCCCAGTTCGATACTCATTAAAGGCGGAAGA
AAGGGCGTCTTCCGCAGTAATTAGGGTCCACACTCCGGGCATTACAAAGT
GATTTCATTTCATCATTATTAATAAGAAGAGGTGGTGAAAGAGCTTCCTT
CTACTATATCACTGTAGCAAATTTATCCTTATATTATAAAGTGTATCAAA
AAATCCATTATAGTATTATTTGCTTGCTCAACATCAAGATGGGAATCAAC
GTATCTTTGAAAATGAGACGATGGGCAGGGCATCGTCATCTATGTAGAAA
CATTTTTCTCTTCTCTGCTTTTAGTGCTTTGTTGTTGTTCGTTGTATTAT
ATTCGGTAGTTGGACGTGAAATATTTTGCAATGTGAAGATGAGCGATGGT
GGAAATGTAAAGATTGTCATCGTTGATCAACATCACGAAGGTATTTTGTC
AGTTTCGTCAATTTTCGAGATCGCTGACTTACGAAAATTAAATCTACGTG
AAATTTTGGAAATGAGAATTTGTAATTGATTCAGGGCTATCTATAACAAC
TTTTTGTCTGATTCGCGCAATTTATCAAAATGCTGAATCACGAAAATAAA
TTCGCAGAAAATAATTTTGGCACGTAAAATTAAATTTCGCAAAAATTAAT
TGGATGAAAAGTAGTGTTGTTCTCAGCGTTATCCTGATCAAATAATTCGA
TCTCACAATTTTAATTTTCCTTTTCAGTGATTCCTCATTGGTACCAAGCA
ATCAACGATGGTAAAATCTCATCCAACAAAAATACACTGGTAAATATTTT
ATTATGTAGAATTTAAGATTTCTTGCTTTCTCGGGATACAGGGGTATTGA
AACCAAAGATTTTTTAAAAGGAAACCCCATATAGGACATTAAAACTCACA
ATAACAATTGCTATCTACCTTGAGTGACTGAAACGATTTGGAACAACTCG
CAAAGTTCAGGACGGTAGAAACGCATATTAGTCCTCAGTTAGTCAGGATT
CATAAACATCATAACTAACCGTCTCCGTCATAGGAAAGACGATATAAATA
TAAACTTGTGTATAAAGGAAAGATAAAGAGTAATTGTGAAAAACATTTCG
TTCTTTTCCTGTAGATTCATTTCGATGCACATTCAGACATGGCTACACCA
GAGAATTTTGAGATGTTAGAGGAAACATTACAACATCCAAACGAAAAGCT
TCACAAAAATGCGTCTCTCTTATTCCCACTCATGCAAGCAAACGACCGTT
TCATTACTTCCGCTGTTTTNCACGTCCCTCTTATTCCCACTCATGCAAGC
AAATGACCGTTTCATTACTTCCGCTATTTTAACCGGTCTTGTTGACCGTG
TCATATGGGTGCAACCGGATTGGCTCAGTCAGGATTTGGCGGAGATACAA
GTTGGATATGTAGGGTACACTATCAATAAACATGACCCGAAAGAAACAAA
AACTTCTTGTATGTGTAACAAGGATTATCGAAAATCAGATAAAAATTTCA
GTAAATGGCTTTGTTTTTACTTAGCAGCAGCTGTTGAAAATCAAACAGTT
TTTGTGAGTCAAGAGAATTGTCTTAAGGTCCAACCAATGAGATTTTTTAT
GTTCAGCGAAACTGTTTTCAAACGCGTGTTTCAGGTCGATTCCCTGAAAG
CTGGTCATGTGATCATCGATATTGATGAAGATTATTTCGGGGTGGAGGGC
GGCGTCCAAAAAATGATTGATGGCGGGATTCCAAAGGAAGTAATAACAAA
TATTGATAATCTAATGCCTGACTTGTTTTGTGTCAATTCCATAATGGCGG
AACAGCGATTGAACAAAGCGGTTCAAACCATGTTTTACGAACTGTATATT
TCTTCTGAGAAACCCACTTTGAAACATTTAAAAGAAAGGGTGATGAAACA
TACTCAAAAGTATTTCTGCGGACGAAACGATGCACTTACTCTCAAAAGGT
TCACAAATTATCTTCAAAAACATACGAATAAAGAAATATTAAAAGCGCTT
GCTTCAACAAAATATTGCTTATTCGAAAGCTTGCAACTACAGATAGACAA
AAGACTGGACGCTGGCCATGAATTTGCATTATGCCATGGAACAATTTATC
CTGAAAACACTTTAAATGATTTATTCACTGACTCCAAAACTGGAATTGAG
ACCCGTCGTGATAATTTGTCTAAAATGTTGGACTTTATTTACGCGAGTAC
GCGACCACGTTTAATCACGATTGCACGTTCTTTACGTGACGGTTACGTGC
CCCGTGAGCAACAAAGATTCATTGAACGTAACGTACGTAAAGCAGTTGAC
CTAACTTTGAGGAAATTGAAAATGACTTCTCAAACTATTTTTGATGAGAA
TCTAGTTTTTGGTGAAAAAGGCTGGGTGTAAAGTTTTAACGTTTTCGATT
GTTTTACACCTATTTTTATATTTTA Coding sequence (CDS) from alignment at scaffold_315:112185..115509- >TCONS_00058994 ID=TCONS_00058994|Name=TCONS_00058994|organism=Clytia hemisphaerica|type=CDS|length=1173bp|location=Sequence derived from alignment at scaffold_315:112185..115509- (Clytia hemisphaerica)
ATGCGTCTCTCTTATTCCCACTCATGCAAGCAAACGACCGTTTCATTACT
TCCGCTGTTTTNCACGTCCCTCTTATTCCCACTCATGCAAGCAAATGACC
GTTTCATTACTTCCGCTATTTTAACCGGTCTTGTTGACCGTGTCATATGG
GTGCAACCGGATTGGCTCAGTCAGGATTTGGCGGAGATACAAGTTGGATA
TGTAGGGTACACTATCAATAAACATGACCCGAAAGAAACAAAAACTTCTT
GTATGTGTAACAAGGATTATCGAAAATCAGATAAAAATTTCAGTAAATGG
CTTTGTTTTTACTTAGCAGCAGCTGTTGAAAATCAAACAGTTTTTGTGAG
TCAAGAGAATTGTCTTAAGGTCCAACCAATGAGATTTTTTATGTTCAGCG
AAACTGTTTTCAAACGCGTGTTTCAGGTCGATTCCCTGAAAGCTGGTCAT
GTGATCATCGATATTGATGAAGATTATTTCGGGGTGGAGGGCGGCGTCCA
AAAAATGATTGATGGCGGGATTCCAAAGGAAGTAATAACAAATATTGATA
ATCTAATGCCTGACTTGTTTTGTGTCAATTCCATAATGGCGGAACAGCGA
TTGAACAAAGCGGTTCAAACCATGTTTTACGAACTGTATATTTCTTCTGA
GAAACCCACTTTGAAACATTTAAAAGAAAGGGTGATGAAACATACTCAAA
AGTATTTCTGCGGACGAAACGATGCACTTACTCTCAAAAGGTTCACAAAT
TATCTTCAAAAACATACGAATAAAGAAATATTAAAAGCGCTTGCTTCAAC
AAAATATTGCTTATTCGAAAGCTTGCAACTACAGATAGACAAAAGACTGG
ACGCTGGCCATGAATTTGCATTATGCCATGGAACAATTTATCCTGAAAAC
ACTTTAAATGATTTATTCACTGACTCCAAAACTGGAATTGAGACCCGTCG
TGATAATTTGTCTAAAATGTTGGACTTTATTTACGCGAGTACGCGACCAC
GTTTAATCACGATTGCACGTTCTTTACGTGACGGTTACGTGCCCCGTGAG
CAACAAAGATTCATTGAACGTAACGTACGTAAAGCAGTTGACCTAACTTT
GAGGAAATTGAAAATGACTTCTCAAACTATTTTTGATGAGAATCTAGTTT
TTGGTGAAAAAGGCTGGGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058994-exon-scaffold_315-1575043694:115371..115509 | TCONS_00058994-exon-scaffold_315-1575043694:115371..115509 | Clytia hemisphaerica | exon |
| TCONS_00058994-exon-scaffold_315-1575043694:114170..114285 | TCONS_00058994-exon-scaffold_315-1575043694:114170..114285 | Clytia hemisphaerica | exon |
| TCONS_00058994-exon-scaffold_315-1575043694:113821..113882 | TCONS_00058994-exon-scaffold_315-1575043694:113821..113882 | Clytia hemisphaerica | exon |
| TCONS_00058994-exon-scaffold_315-1575043694:112185..113495 | TCONS_00058994-exon-scaffold_315-1575043694:112185..113495 | Clytia hemisphaerica | exon |
| TCONS_00058994-exon-scaffold_315-1510915933:115371..115509 | TCONS_00058994-exon-scaffold_315-1510915933:115371..115509 | Clytia hemisphaerica | exon |
| TCONS_00058994-exon-scaffold_315-1510915933:114170..114285 | TCONS_00058994-exon-scaffold_315-1510915933:114170..114285 | Clytia hemisphaerica | exon |
| TCONS_00058994-exon-scaffold_315-1510915933:113821..113882 | TCONS_00058994-exon-scaffold_315-1510915933:113821..113882 | Clytia hemisphaerica | exon |
| TCONS_00058994-exon-scaffold_315-1510915933:112185..113495 | TCONS_00058994-exon-scaffold_315-1510915933:112185..113495 | Clytia hemisphaerica | exon |
| TCONS_00058994-exon-scaffold_315-1491911889:115371..115509 | TCONS_00058994-exon-scaffold_315-1491911889:115371..115509 | Clytia hemisphaerica | exon |
| TCONS_00058994-exon-scaffold_315-1491911889:114170..114285 | TCONS_00058994-exon-scaffold_315-1491911889:114170..114285 | Clytia hemisphaerica | exon |
| TCONS_00058994-exon-scaffold_315-1491911889:113821..113882 | TCONS_00058994-exon-scaffold_315-1491911889:113821..113882 | Clytia hemisphaerica | exon |
| TCONS_00058994-exon-scaffold_315-1491911889:112185..113495 | TCONS_00058994-exon-scaffold_315-1491911889:112185..113495 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_315 | supercontig | scaffold_315:112185..115509 - |
Blast
The following BLAST results are available for this feature:
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