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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058990 ID=TCONS_00058990|Name=TCONS_00058990|organism=Clytia hemisphaerica|type=transcript|length=2338bp
CGCAGTTTTTGAGTAAGCACAGCAAAAGACTTaaagaaaggaaaatgaaa
tGGCTGGAGCATCGTTTGAatcttgaaatgaaaatgatcTTTTGGAAAGC
TGACTTTTAGATAATTTTAGAGCATGGTTGCAAAAGTGCTGCTTAAGTCT
TGGAGAGCAAGAAGAAAGAAAGTTATATCTGCTTCATCTCGGTGTAACCA
AGGGAGTTCTTCATCGAGCGATTTTGATCCAGAACCGGAAGGAACTGCTG
ACAATGCTGCTAATCATATATCACCAGAAAACGAGGGTCATACAAGTTCT
GAAGAAGTTGAAGTTGGGTCACCTAGTGTTTTTGAAGACATAGATCATGT
TGATGAGGCTGTTGTTGCTTCTgctgaaaattttttgcctGGCGACATTG
TTATTTCTAATGATGAAAACGATTCTTCACCAGCTGAATCTCCTGATTCG
TTTTCATCACAATCTGATACTGACTGTTTGAAAGATGAAATTGACCATGT
TCTTTGTGATAAATTGAAAACTTGGGCGCTAGATAACCATTGCACAAGAA
CATCAATCAACCAAATATTGACCATTATTCGTGACTTGGGTTGTAATTTA
CCAAAAGATTCAAGAACGTTACTCAATACTCAAAGAAGTGTTGAACTGAG
GCAAATGGGACTAGGATATTATATCTATATTGGCGTGGAGAATCGAATCA
GAAAACTTCTTGCTCTGAACGACAATTTGAATACCATTGTTTTAATGATA
AATATAGATGGTCTGCCCCTATTCAAGTCAAGTCCCATCAACCTTTGGCC
CATATTGATTCAATTCCACCGTTTTAAACCAATATCTGTTGCTTACTTTT
GTGGAACATCAAAGCCCCCATTTGAAGAATTTCTTAAAGACTTTGtcatt
gaaatgaattttctgCTTCATAATGGTATAAATTTTAATCATGTTCATCA
TCCAGTTACAATATTTTGTTTTACTTGTGATTCGCCTGCACGCTCAGGAC
TAAAAGGAGTTGTCCAACATACAGGCTATTATGCCTGCGAACGCTGTGAT
TTGAAAGGGAAATATGTGAGACATAGAATTGTGTATGACCAGGATGCTCC
CAAAGGTGTTGCACGTACTGATCAAGTTTTCCGAACAGATGGCTATGGTG
AACCAGATGAAGAAGGAAAACGTCATCAACTAGAAGAGTCGGGACTTACT
CCACTGCTTATTGATCTGATTAAAGATGTTGCAATTGATCCCATGCACCT
GGTTTATCTGGGTGTGACCAGACGTCTTCTCTATTACATGAAAggatttt
ataagaatatcagaaATGGGAAATTATCATCTGCTTACTTAAATGCTATT
ACAATTGAGTTGAGTACTCTAAAATTACCAGCAGAATTTGCCAGACAGCC
TAGAGGTCTTTCAGAATTGGATCGCTGGAAGGCTACAGAATTTAAATCAT
TTCTCTTGTACACTGGCATTACCATCTTGCGAAGGTATTTATCCCCAGCT
GTTTGGACACATTTCATGAGCTTTTCTATTGCTATTAGACTGTTGAGTGA
AGAGAATGACACTATAAGAAACTCAAATCTATTAGTTGCAGAAAACCTGT
TAAAAGACTTCATCACAAGTTCTCACAATTTCTATGGAGAAACATTTTGT
GTATATAATGTTCACAACCTAATACACCTAGTTGAAGATGTTGCCTATTT
CCAGCTTCCACTTATTAGATATTCCTGCTTCCAGTTTGAGAATCACCTAC
AGAAAATCAAGAGTCTGGTCAGGGGTAGGAACAATCCTCTGGCTCAAATT
GTGAAAAGAACAGACGAATTGGATGGTAGCTATTATTTAAACGTTCCACT
GACTGTAAAAGTCAAATCTGATCAAAAGAATTCATTTTTTCTTAACAGTA
CATATCTCTTCATCATTCGAAAGTTGGAAAATGATGGCTCTGTTTTATGT
GATACTTTTCCTGTAAACACTTTGCAgtctttttttaatgtttccaatgT
TGACTCAAAAGTTTTGGGCATTTATGTTTTAAAACGCACATTTCAAGCAA
CACTTGGTAAGTTCTTGAAAGAAGATTTATCCAAAAAATGTGTTTGTTTA
CCATGTGGAAACGATTTTATTATTATTCCTTTATTGTGATTTTTAATCTG
AAGATTCCTATACTAATAATTAAAATACAATACACTTTTTCCAAATGATT
CTTTTTGTACTTATTAATAAGGATACGCAACgatcttttggaaaaatttg
agaaaataaatatgaaagattttttttgattgaatcGAGATGCCAAATCT
AATGCTCTTCCAAATTATATATTGGTAATTGTTAACCG Run BLAST on NCBI transcript from alignment at scaffold_315:59241..65220- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058990 ID=TCONS_00058990|Name=TCONS_00058990|organism=Clytia hemisphaerica|type=transcript|length=5980bp|location=Sequence derived from alignment at scaffold_315:59241..65220- (Clytia hemisphaerica)
CGCAGTTTTTGAGTAAGCACAGCAAAAGACTTAAAGAAAGGAAAATGAAA
TGGCTGGAGCATCGTTTGAATCTTGAAATGAAAATGATCTTTTGGAAAGC
TGACTTTTAGATAATTTTAGAGCATGGTTGCAAAAGTGTAAGTTTATTAT
TAATCATGTTGATGTTTTCCCAGTCAGCAGTGTTCAGCTAACAAGAAATG
AAATCTGCTGTTTGCCATAACTTTCAAGGTTAGCCAGATTTTTTTCTGTA
TAAGAATACCAGGTAGAGGAAGCATGGATGCAGGCCAAGTTTTCTATTCA
CTAAATTGAGATGTCAAAACATCAAGAGTGTTAAAGAATCCTCTAATAAG
AATCATCTAGCTAATGTTATTATCCCTGTTTTAATTTCCTCATTTTACAT
TGTGCATTCATCTTAAACATTGCTTGGTTGAATTGATTTAGTTCAATGAC
TGTTTTTTGTTCGATGAAGTTTGATTGGTTTGATTGCCGACTGACAGGGT
GTGTTTTTCTGTGAAAAAAGTGATCATACTGTCATATGAATGGGGCTAAA
AATACCTAAATTTTTTCAAAACTTTATAATTTGTCCACATATTTTTCCCA
ACATTTCCAAAAAAGGAGAGATTGATTTTTCTAATTTACCAGGCGATGTC
AAACGAACGTTATCGAGCTGATTTTCGTATTTGAACCATCAAACTTAATC
AAACAGAATCAAACGATAGGTGTTTGACTACCCCAGACGGTCGTAATCGA
TAAAATCGACCATCGATTGCAATCGATAGATAATGGATATTAATCGATCA
ATTAGTTATCGATTAAAATCGATAATCGATAGCTAATCGATTACTAATCG
ATCGCATTGATTAGTTCGATAGCTAAGGGGTCAGTCACAAATCGATTCTA
GGTTAGAAGAACGTCAATTGACGTTTTAAAAGCTGACCCACCCACCCACA
CCCAAAAACGTCAAACACCTTGATATCCCCGAAAATCGATAAAAACTGCC
TTCATTGCCGTTTCGTCAGCCATCTTGATTTTCACTACGGCTCCCATAGT
TTATATTTGAAAAAAAAAAGAAACGGAGATAATTTCTAAACTTGTTCACA
AAATTCCCGTAATGAATTATCTCCGTAGTATGTAGCGACAGAAAGAACGG
CCATCTGCAAAAATTCAAGGGCCGTTCGGGCCGTCAAACAAAGAAAAGAC
CGGGCCGTTTGTTTTGGTTTTCAAAACGAAGCGATCAAACAGAAACATGG
CGAGAAGTAATATTTGGCATGGAATGAAAAATCGATGTTTCTGAAAAACG
TCAACAACCTTTAACCCACCCACCCATATACGTCAATTGACGTTCTTCTA
ACTTAAAATCGATTTGTGACTGACCCCTAATTGACGCTCAAAAAATTGTG
AATATCGATTAATAATCGATAACCAATTGATCGATTAATATCGATTGTAA
TCGATCGATTTTATTAATTACAACCGTCTTAACTATCGTGCCAAACCCAA
TCAACGAATCAAACATCTATCAAACATTATGAAAATTTCTTGATTAGTTA
GATTCGATGACCTTCGATAACCTTCGATAGAGTTTGACAGGAACAAACGT
CATTTTGAGCGGCCGTCTGCCAATACGCCCAGGCGTAATCTATCGAATTT
TGCGATTATCGAATTAAGCGAAGCCATTATATTTCGATTAATCAAAATAA
TCAAAGCCTAATCGAATTAATTGAGATAAAAAAATCTTGGAAAATTCGAT
CAATTCGATAAGTTTGATTGGGCTTCGATTTGCCTTGATAGCTTCGATTA
GTTTCAATTTTCCAATTTTCTTTATTGCATTTCTTGTTCAATGGATATTG
GTGTGAAGGAACTTTCACGAAGTCTTAAGTGACGGCTTAAAATTCATTGT
CGAGCTAATCGCACCACACTTTTTCAATAAAATGACGTTAACTGAACTTC
AAAAAAGTCTAACTGTTGTCCAACTTCTCAGCGAATCACGTGCACTTTTT
TCAATGACTTTTTCTGGCCTGTTTCTTTGTTTTTATTCTCATAACAGATC
ATGCACATTAATCGAAGGTATAGAACACTTATCAAAGCTTATCAAAGATT
ATCAAATCTTAATCGAAACTTATCGAACATTAATCGAACTAATTGAGAAA
AACCTGGGAAAATTCGATTATAGCTCGATAGTTTAGATTAATCAAAGCCT
AATGGAAGTATTAATTTTGATTAGTTTCGATAAATTCAATTAAAAATCGA
ATTCAATTTTGTTCGATAGATTACGCCTGGATACACCCAAACGATCTCAA
TCAAACAGAATCGTCGAATAACCAAATCGAATGCAATCGACCGATTGAAA
TTCAATTGTCAAACACAATCGAATCTCGACATCAAAATTCTGGGTAATAC
ACGTTTTTTATAAGCATAATGCTTATAAGCATATCCAGAGAGACAATTCA
ATTTTGCAATGTTAGAGCATTTTTACTAAAATAATGGTAATATATCAGGG
GTCGGAAAAAATAAACCAACAGGGTAAAAGACTTACGTCATTACATAAGC
ATAGCATAAGCATATTTGAGGCTCAAAAATAGAATTTTGCTAAGCATAAT
GAGGCGGAGAAAAAAAACCCCTATGCCTATAAAAAAAACGTGTATTCAAT
TGGTTCGATTGTTGCTCAACTGCATTCCATTGTCGTTCGACTGCATTCGG
TATGTTTGGAAGAAAATTTTTACATCAGTTGTTGCTAAATAAGGCAAGTC
CAATTAAACATTTACAAACCCAATCGAACGCATTCAAACACAATCCAAAT
GCAGTCAAATCCTAATTTATTGGAATATAAATAAGAAAATCTATAAATTG
AACTAATCAAACCCAAATCGAACTTGATCAATCTCATTCGAACTGATCGA
ACTTAATCGGCATTTGGTCGTTAAGGGGGTGGGGTCCAGCTACATGCCGA
TAAAAAAACAAGTATTAGACAAAAATCTGTTTAGGCAATTTCTTCCCGAT
TCCGTCCACAAACTCCACTGAAAGTGAAAGCATACAATTTTGCTTGCTTT
CACCTTTGCACACTGCTGCATGTTTTATGTTATGCATGTTTTTTATGTTT
ATTGCAGTTATAATATTGATGTGTTTATCTTTTTTCAAATTTAAATACCA
TATAGTTCATTGAAAATGGGACCTTTTTTTTTTTGGGATGGATAGAAAGA
AGAGAAAACAAAGGTAAGTTCTCTCTTCTTATTTTTATGAGTAAAAAATG
TCAATTGTAGTTCAGACAAACTGGATAGGGAATTTTGATTTGGTAGCAGC
CAAATTTGAAATTTTGCAACTTTTGACCCATTGAAATTTTTCATTTTTGT
GTATTTGTTTTTTGTCAAATTTGACTGAAAAACTCCAAATTAAAGTACCA
GCAAAAATCATTACCATTAGGTATATACAGGATTTACCTTAAGGGAACTT
ATTTTGGTGGGAACTAATTTTGGTGAAATTGGCAAGCAAACTCAAAATTC
ACCAAATTTAGTTCCCACCAACAAAATTGATTTTCTAGGTCATTCGCCCA
TATTAAATTTGTTGCTCACTCGCCAAAATAACTTCTCACCAAAATTATTT
TTTTGGTGTTTTGCCAGGTTTTGCTTTGAATTCAACAAAATTGCTCCAAA
TAAGGCAAAATAGAACATATTGAAGCTGTCATTCGCCAAAATTAGTACCC
ACCAAAATTAAAAAATTTCTGACGTTCATCAAAATTAGTTCTCACCAAGA
AAAGTTCCCTTAAGATACTTTCATTTTAGGCTGCTTAAGTCTTGGAGAGC
AAGAAGAAAGAAAGTTATATCTGCTTCATCTCGGTGTAACCAAGGGAGTT
CTTCATCGAGCGATTTTGATCCAGAACCGGAAGGAACTGCTGACAATGCT
GCTAATCATATATCACCAGAAAACGAGGGTCATACAAGTTCTGAAGAAGT
TGAAGTTGGGTCACCTAGTGTTTTTGAAGACATAGATCATGTTGATGAGG
CTGTTGTTGCTTCTGCTGAAAATTTTTTGCCTGGCGACATTGTTATTTCT
AATGATGAAAACGATTCTTCACCAGCTGAATCTCCTGATTCGTTTTCATC
ACAATCTGATACTGACTGTTTGAAAGATGAAATTGACCATGTTCTTTGTG
ATAAATTGAAAACTTGGGCGCTAGATAACCATTGCACAAGAACATCAATC
AACCAAATATTGACCATTATTCGTGACTTGGGTTGTAATTTACCAAAAGA
TTCAAGAACGTTACTCAATACTCAAAGAAGTGTTGAACTGAGGCAAATGG
GACTAGGATATTATATCTATATTGGCGTGGAGAATCGAATCAGAAAACTT
CTTGCTCTGAACGACAATTTGAATACCATTGTTTTAATGATAAATATAGA
TGGTCTGCCCCTATTCAAGTCAAGTCCCATCAACCTTTGGCCCATATTGA
TTCAATTCCACCGTTTTAAACCAATATCTGTTGCTTACTTTTGTGGAACA
TCAAAGCCCCCATTTGAAGAATTTCTTAAAGACTTTGTCATTGAAATGAA
TTTTCTGCTTCATAATGGTATAAATTTTAATCATGTTCATCATCCAGTTA
CAATATTTTGTTTTACTTGTGATTCGCCTGCACGCTCAGGACTAAAAGGA
GTTGTCCAACATACAGGCTATTATGCCTGCGAACGCTGTGATTTGAAAGG
GAAATATGTGAGACATAGAATTGTGTATGACCAGGATGCTCCCAAAGGTG
TTGCACGTACTGATCAAGTTTTCCGAACAGATGGCTATGGTGAACCAGAT
GAAGAAGGAAAACGTCATCAACTAGAAGAGTCGGGACTTACTCCACTGCT
TATTGATCTGATTAAAGATGTTGCAATTGATCCCATGCACCTGGTTTATC
TGGGTGTGACCAGACGTCTTCTCTATTACATGAAAGGATTTTATAAGAAT
ATCAGAAATGGGAAATTATCATCTGCTTACTTAAATGCTATTACAATTGA
GTTGAGTACTCTAAAATTACCAGCAGAATTTGCCAGACAGCCTAGAGGTC
TTTCAGAATTGGATCGCTGGAAGGCTACAGAATTTAAATCATTTCTCTTG
TACACTGGCATTACCATCTTGCGAAGGTATTTATCCCCAGCTGTTTGGAC
ACATTTCATGAGCTTTTCTATTGCTATTAGACTGTTGAGTGAAGAGAATG
ACACTATAAGAAACTCAAATCTATTAGTTGCAGAAAACCTGTTAAAAGAC
TTCATCACAAGTTCTCACAATTTCTATGGAGAAACATTTTGTGTATATAA
TGTTCACAACCTAATACACCTAGTTGAAGATGTTGCCTATTTCCAGCTTC
CACTTATTAGATATTCCTGCTTCCAGTTTGAGAATCACCTACAGAAAATC
AAGAGTCTGGTCAGGGGTAGGAACAATCCTCTGGCTCAAATTGTGAAAAG
AACAGACGAATTGGATGGTAGCTATTATTTAAACGTTCCACTGACTGTAA
AAGTCAAATCTGATCAAAAGAATTCATTTTTTCTTAACAGTACATATCTC
TTCATCATTCGAAAGTTGGAAAATGATGGCTCTGTTTTATGTGATACTTT
TCCTGTAAACACTTTGCAGTCTTTTTTTAATGTTTCCAATGTTGACTCAA
AAGTTTTGGGCATTTATGTTTTAAAACGCACATTTCAAGCAACACTTGGT
AAGTTCTTGAAAGAAGATTTATCCAAAAAATGTGTTTGTTTACCATGTGG
AAACGATTTTATTATTATTCCTTTATTGTGATTTTTAATCTGAAGATTCC
TATACTAATAATTAAAATACAATACACTTTTTCCAAATGATTCTTTTTGT
ACTTATTAATAAGGATACGCAACGATCTTTTGGAAAAATTTGAGAAAATA
AATATGAAAGATTTTTTTTGATTGAATCGAGATGCCAAATCTAATGCTCT
TCCAAATTATATATTGGTAATTGTTAACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058990-exon-scaffold_315-1575043694:65084..65220 | TCONS_00058990-exon-scaffold_315-1575043694:65084..65220 | Clytia hemisphaerica | exon |
| TCONS_00058990-exon-scaffold_315-1575043694:59241..61441 | TCONS_00058990-exon-scaffold_315-1575043694:59241..61441 | Clytia hemisphaerica | exon |
| TCONS_00058990-exon-scaffold_315-1510915933:65084..65220 | TCONS_00058990-exon-scaffold_315-1510915933:65084..65220 | Clytia hemisphaerica | exon |
| TCONS_00058990-exon-scaffold_315-1510915933:59241..61441 | TCONS_00058990-exon-scaffold_315-1510915933:59241..61441 | Clytia hemisphaerica | exon |
| TCONS_00058990-exon-scaffold_315-1491911889:65084..65220 | TCONS_00058990-exon-scaffold_315-1491911889:65084..65220 | Clytia hemisphaerica | exon |
| TCONS_00058990-exon-scaffold_315-1491911889:59241..61441 | TCONS_00058990-exon-scaffold_315-1491911889:59241..61441 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_315 | supercontig | scaffold_315:59241..65220 - |
Blast
The following BLAST results are available for this feature:
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