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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058982 ID=TCONS_00058982|Name=TCONS_00058982|organism=Clytia hemisphaerica|type=transcript|length=1477bpRun BLAST on NCBI transcript from alignment at scaffold_315:2686..30712- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058982 ID=TCONS_00058982|Name=TCONS_00058982|organism=Clytia hemisphaerica|type=transcript|length=28027bp|location=Sequence derived from alignment at scaffold_315:2686..30712- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00058982 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 1.476e-27 Identity = 54/121 (44.63%), Postives = 68/121 (56.20%), Query Frame = 1
Query: 913 CPINGGFTDWTSWAGCNADCGPTNTGLTETRSRTCTNPAPDYFGNTCVGDLSESSACNADPCPVHGEWGQWSNWTECDKPCGVGFQNRSRVCDDPAPAHGGNDCVGTLTSQRQICNTNYCP 1275
CPI+G + W SW+ C+ CG G R+R C++P P Y G C G +S CN+DPCP HG W WS W C + C G R R CD+P P++GG C G SQ Q CNT+ CP
Sbjct: 4697 CPIHGKWATWASWSACSVSCG----GGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRAC-GGPDSQIQRCNTDMCP 4812 HSP 2 Score: 117.087 bits (292), Expect = 1.778e-27 Identity = 53/121 (43.80%), Postives = 71/121 (58.68%), Query Frame = 1
Query: 913 CPINGGFTDWTSWAGCNADCGPTNTGLTETRSRTCTNPAPDYFGNTCVGDLSESSACNADPCPVHGEWGQWSNWTECDKPCGVGFQNRSRVCDDPAPAHGGNDCVGTLTSQRQICNTNYCP 1275
CP++G +++W+ W C CG N +TR+RTC NP+ + G C G+ E CN PCPVHG W W W C + CG G Q R+R+C++P PA GG+ C G T Q Q+CN CP
Sbjct: 4583 CPVDGSWSEWSLWEECTRSCGRGN----QTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAET-QMQVCNERNCP 4698 HSP 3 Score: 109.383 bits (272), Expect = 6.488e-25 Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 1
Query: 913 CPINGGFTDWTSWAGCNADCGPTNTGLTETRSRTCTNPAPDYFGNTCVGDLSESSACNADPCPVHGEWGQWSNWTECDKPCGVGFQNRSRVCDDPAPAHGGNDCVGTLTSQRQICNTNYCP 1275
CP++G ++ W W C+ CG T+TR+R C NP P + G+ C G ++ CN CP+HG+W W++W+ C CG G + R+R C DP P +GG C G+ Q CN++ CP
Sbjct: 4640 CPVHGAWSAWQPWGTCSESCGKG----TQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGS-DVQSDFCNSDPCP 4755 HSP 4 Score: 103.99 bits (258), Expect = 3.874e-23 Identity = 50/121 (41.32%), Postives = 62/121 (51.24%), Query Frame = 1
Query: 913 CPINGGFTDWTSWAGCNADCGPTNTGLTETRSRTCTNPAPDYFGNTCVGDLSESSACNADPCPVHGEWGQWSNWTECDKPCGVGFQNRSRVCDDPAPAHGGNDCVGTLTSQRQICNTNYCP 1275
CP +G ++ W+ W C+ C G R RTC NP P G C G S+ CN D CPV G WG W +W++C CG G + R R+CD P P GG C G T+Q CN CP
Sbjct: 4754 CPTHGNWSPWSGWGTCSRTC----NGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGD-TTQVTRCNVQACP 4869 HSP 5 Score: 103.219 bits (256), Expect = 6.840e-23 Identity = 48/123 (39.02%), Postives = 65/123 (52.85%), Query Frame = 1
Query: 907 TLCPINGGFTDWTSWAGCNADCGPTNTGLTETRSRTCTNPAPDYFGNTCVGDLSESSACNADPCPVHGEWGQWSNWTECDKPCGVGFQNRSRVCDDPAPAHGGNDCVGTLTSQRQICNTNYCP 1275
+ ++GGF+ W++W C+ CG G+ + RSR C P P G C G E C PCPV G W +WS W EC + CG G Q R+R C++P+ HGG C G + +CN CP
Sbjct: 4524 VIVQVHGGFSQWSAWRACSVTCG---KGI-QKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAV-EIIMCNIRPCP 4641 The following BLAST results are available for this feature:
BLAST of TCONS_00058982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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