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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058978 ID=TCONS_00058978|Name=TCONS_00058978|organism=Clytia hemisphaerica|type=transcript|length=1270bp
CTTTAAACAAAACTTCTAAAGACGTGAGTGTCACATTGAAACTCCAGCGT
TTTCAGCAAGGTCAGTGtctgtagatttcaaaaatatgtgGTATatgttt
caaagaatatatGGTTGAGTATATGACACTTAGCGGTTTGTAAGATGATT
AGACATTTTTTCCGAGCTTTAACCAAATTTCACGGAAAATTAGATTTCAA
GGAAAATTGGTTTTTTCCTCCTTAGATGCGTCTCATTGTTTTCTCTTTAC
AGTGTGTTTTCACTGATACAGTGGTTGAGTATATGACACATTACGGTTTG
TAAGATGATTAGACATTTTTTCCGAGCTTTAACCAAATTTCACGGAAAAT
TAGATTTCAAGGAAAATTGGTTTTTTCCTCCTTAGATGCGTCTCATCGTT
TTCTCTTTACAGTGTGTTTTCACTAATACAGTGGTTGAGTATATGACACT
TAACGGTTTGTAAGATAATTAGACATTTTGCCGAGCTtaaccaaattttg
aaaattaaatttcaaggaaaattggTTTTTTCCTCCTTGGATGCGTTTCA
TCGAACTCACTATGTATAAGACTGGCTTTGTAGCGGTTGAAAGGATTATT
CGGGAATGGACTTTGTTATGGAAAGAACAGCCACAACATATCCGTGATGA
AATTGGACAAATCCAATTTGAAACTTttttgtcaaAAATGATGACTTTAG
TTGGTTCGAAAGCCACTGAGAACGTTAGCGAGGTATCGAAACTCATTAAA
CATGCTTTGTTAGCCAGGTTACCAAAGCGACGTTACGTCACAGGTATTGA
ATGTAATATTTCTATTGTCTTATCTCACCTTCCAACCATAATCCTTGATT
GGATGTTCATGGCAAATATGCCCATTCTTCGACCAATGATATTATCGAAA
AAGGAACAGTAAAATATGAGTTGAATGTATATATCTGTTTATAGTTTAGG
TTCAATCAAGTAAACGAACATTGTTATGGAGATTGCTCGATACGTTTGCA
GaaccaaatatcaaaatttacttttcttcaaaacttaAACCCCGCTACAG
TCTATTTCACGCTTAATATGCGTAACTGACCTAACGTATCCAACGATCTC
GTAAGCGTGAAACACAGGCTGtagtatgttttaatttttggcaaaaataa
attttgatacatttttcaaaaatgataagattttcTCACTTTATgtagaa
aacaaatttttatcaattttttggaCTGTAGACTTTAGAATATAAGATTT
GAATGAACAGTACTAACGAG Run BLAST on NCBI protein sequence of TCONS_00058978-protein >TCONS_00058978-protein ID=TCONS_00058978-protein|Name=TCONS_00058978-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MRFIELTMYKTGFVAVERIIREWTLLWKEQPQHIRDEIGQIQFETFLSKM
MTLVGSKATENVSEVSKLIKHALLARLPKRRYVTGIECNISIVLSHLPTI
ILDWMFMANMPILRPMILSKKEQ Run BLAST on NCBI transcript from alignment at scaffold_315:384054..385741+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058978 ID=TCONS_00058978|Name=TCONS_00058978|organism=Clytia hemisphaerica|type=transcript|length=1688bp|location=Sequence derived from alignment at scaffold_315:384054..385741+ (Clytia hemisphaerica)
CTTTAAACAAAACTTCTAAAGACGTGAGTGTCACATTGAAACTCCAGCGT
TTTCAGCAAGGTCAGTGtctgtagatttcaaaaatatgtgGTATatgttt
caaagaatatatGGTTGAGTATATGACACTTAGCGGTTTGTAAGATGATT
AGACATTTTTTCCGAGCTTTAACCAAATTTCACGGAAAATTAGATTTCAA
GGAAAATTGGTTTTTTCCTCCTTAGATGCGTCTCATTGTTTTCTCTTTAC
AGTGTGTTTTCACTGATACAGTGGTTGAGTATATGACACATTACGGTTTG
TAAGATGATTAGACATTTTTTCCGAGCTTTAACCAAATTTCACGGAAAAT
TAGATTTCAAGGAAAATTGGTTTTTTCCTCCTTAGATGCGTCTCATCGTT
TTCTCTTTACAGTGTGTTTTCACTAATACAGTGGTTGAGTATATGACACT
TAACGGTTTGTAAGATAATTAGACATTTTGCCGAGCTtaaccaaattttg
aaaattaaatttcaaggaaaattggTTTTTTCCTCCTTGGATGCGTTTCA
TCGAACTCACTATGTATAAGACTGGCTTTGTAGCGGTTGAAAGGATTATT
CGGGAATGGACTTTGTTATGGAAAGAACAGCCACAACATATCCGTGATGA
AATTGGACAAATCCAATTTGAAACTTGTGAGTTTTACTTctgattttaag
tttttagtTAGAATAGCGAAGCCCTCCACATCAAAAAAGCCCAGAGATCT
TGACTCGTTTCAGAGTCGGCTATAACTGGCGGCCATCGAATTTTTTACAG
TTAAAACTATGATAgacaagatttttgaaacttttcaggGACTTTAAGTA
AACATTCTAAAGACGTGAGTATCACATTCGAGGAGACATTCGAGCTATAG
GGGTTCAAGTTAATGAGGCGCTACTGCATTATTATACAACAACAACTGac
taaactttcaatttttattctggtctgtaaaatactagCCATGCATGTGG
CCGAATCAAAATTTGCAAATCATctataaaatttcgaaaattgaaaagcA
ATACAAAAGAAATCGTGTGTATCGTGTTAtgcttttttttttagttttgt
caaAAATGATGACTTTAGTTGGTTCGAAAGCCACTGAGAACGTTAGCGAG
GTATCGAAACTCATTAAACATGCTTTGTTAGCCAGGTTACCAAAGCGACG
TTACGTCACAGGTATTGAATGTAATATTTCTATTGTCTTATCTCACCTTC
CAACCATAATCCTTGATTGGATGTTCATGGCAAATATGCCCATTCTTCGA
CCAATGATATTATCGAAAAAGGAACAGTAAAATATGAGTTGAATGTATAT
ATCTGTTTATAGTTTAGGTTCAATCAAGTAAACGAACATTGTTATGGAGA
TTGCTCGATACGTTTGCAGaaccaaatatcaaaatttacttttcttcaaa
acttaAACCCCGCTACAGTCTATTTCACGCTTAATATGCGTAACTGACCT
AACGTATCCAACGATCTCGTAAGCGTGAAACACAGGCTGtagtatgtttt
aatttttggcaaaaataaattttgatacatttttcaaaaatgataagatt
ttcTCACTTTATgtagaaaacaaatttttatcaattttttggaCTGTAGA
CTTTAGAATATAAGATTTGAATGAACAGTACTAACGAG Coding sequence (CDS) from alignment at scaffold_315:384054..385741+ >TCONS_00058978 ID=TCONS_00058978|Name=TCONS_00058978|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_315:384054..385741+ (Clytia hemisphaerica)
ATGCGTTTCATCGAACTCACTATGTATAAGACTGGCTTTGTAGCGGTTGA
AAGGATTATTCGGGAATGGACTTTGTTATGGAAAGAACAGCCACAACATA
TCCGTGATGAAATTGGACAAATCCAATTTGAAACTTttttgtcaaAAATG
ATGACTTTAGTTGGTTCGAAAGCCACTGAGAACGTTAGCGAGGTATCGAA
ACTCATTAAACATGCTTTGTTAGCCAGGTTACCAAAGCGACGTTACGTCA
CAGGTATTGAATGTAATATTTCTATTGTCTTATCTCACCTTCCAACCATA
ATCCTTGATTGGATGTTCATGGCAAATATGCCCATTCTTCGACCAATGAT
ATTATCGAAAAAGGAACAGTAAATGCGTTTCATCGAACTCACTATGTATA
AGACTGGCTTTGTAGCGGTTGAAAGGATTATTCGGGAATGGACTTTGTTA
TGGAAAGAACAGCCACAACATATCCGTGATGAAATTGGACAAATCCAATT
TGAAACTTttttgtcaaAAATGATGACTTTAGTTGGTTCGAAAGCCACTG
AGAACGTTAGCGAGGTATCGAAACTCATTAAACATGCTTTGTTAGCCAGG
TTACCAAAGCGACGTTACGTCACAGGTATTGAATGTAATATTTCTATTGT
CTTATCTCACCTTCCAACCATAATCCTTGATTGGATGTTCATGGCAAATA
TGCCCATTCTTCGACCAATGATATTATCGAAAAAGGAACAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058978-exon-scaffold_315-1491911889:384054..384729 | TCONS_00058978-exon-scaffold_315-1491911889:384054..384729 | Clytia hemisphaerica | exon |
| TCONS_00058978-exon-scaffold_315-1510915933:384054..384729 | TCONS_00058978-exon-scaffold_315-1510915933:384054..384729 | Clytia hemisphaerica | exon |
| TCONS_00058978-exon-scaffold_315-1575043694:384054..384729 | TCONS_00058978-exon-scaffold_315-1575043694:384054..384729 | Clytia hemisphaerica | exon |
| TCONS_00058978-exon-scaffold_315-1491911889:385148..385741 | TCONS_00058978-exon-scaffold_315-1491911889:385148..385741 | Clytia hemisphaerica | exon |
| TCONS_00058978-exon-scaffold_315-1510915933:385148..385741 | TCONS_00058978-exon-scaffold_315-1510915933:385148..385741 | Clytia hemisphaerica | exon |
| TCONS_00058978-exon-scaffold_315-1575043694:385148..385741 | TCONS_00058978-exon-scaffold_315-1575043694:385148..385741 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_315 | supercontig | scaffold_315:384054..385741 + |
Blast
The following BLAST results are available for this feature:
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