TCONS_00058968 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058968
Unique NameTCONS_00058968
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058968 ID=TCONS_00058968|Name=TCONS_00058968|organism=Clytia hemisphaerica|type=transcript|length=1316bp
attatttttaaagacagcATATTTTGCAATACACCTTAAATACGATTTAT
TGAAatcttctttttgttccttttaGACGTAAAATATTTGCACACGGGAC
TTCGAAATCGATTAAAAGAGAATATCACAAAAGCTTCACCTTCACTCGGA
CGTGATGCATCTTATACAAAATCTTCTTTAATAGATCGGCTACCAGCTTA
CTTGACTGTCCAATTCGTCCGAttttattataaagaaaaagaaaacgtcA
ATGCCAAAGTATTAAAGGATGTCAAATTCCCAATGACTTTGGATGTGTTC
GATCTATGTTCATCAGATCTGCAAAATAAACTTCAACCCATGCGAGATCG
TTTCAAGGCAGAAGACGAAAAGAACGTCCTCAAAAAAGTGGAAGCAGCGA
AAGCAGGAGGCAAGCCAATGGAGGTGGacgagaagaaaaaagaaatcccT
TATTCCTTCACTGAAGACGTTGGTAGCAACAACAGTGGATATTACGAATT
AAAAGCAGTACTCACACATAAAGGTCGTTCATCCACATCTGGTCATTACG
TCGGATGGGTCCGCATCGGTGGAGATAAATGGGTGAAGTGCGACGATGAC
ACAGTATCACCAATACTTGAGGCTGACGTCCTTAAACTTTCTGGTGGAGG
TGATTGGCATTGTGCTTATGTTCTGCTTTACGGACCAAAGGTGTTGAAAG
TTGACGAAGAATAAATTGGATTTGAGGATGATTCTCAAGAACCCAACACG
CAAAGGGaagttagaattttttttgatgttttttttagttttttgtttgt
tttgtgtaTGAATTTgctaaaatatgaaatttcactTTACGATAGTTCAA
TTACCTGATTCAAGTTTTTTTTCCTGGGTGGGAGTGACAAAATTTAGAAG
AAGTGGTCATTTTCCTAATAGATCATCTCATACTgcatcttatcggagtt
ttttgatttttctactCCGATAAGGTATATTATTTCCTTGGTTCTGAGTA
ATTATATTTCctgatttaattttgaaaaactttcaaatttgttACCGTTA
AATAATTAGCTCTTCCATATCATGCTGAACAGAAATTGATTACTGGAAGG
GTTGTTCTaaattattcttcatttttgtttatCGAAGAAAAGCATACTTT
AGTTTtgtaaacagaaaagaaaacaCTCTTCAGTTCATCGTTATTTTCAC
ATCAGGCAAACTACTTTAATATTTCCTTCTTTGAATTTCACTGCTTGTTT
ACATTCGGAAGAGAGCGGACCTCTTAGTGCAATatgttaacttttttttg
atattGAGGGATATAT
Run BLAST on NCBI

transcript from alignment at scaffold_315:336061..341926+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058968 ID=TCONS_00058968|Name=TCONS_00058968|organism=Clytia hemisphaerica|type=transcript|length=5866bp|location=Sequence derived from alignment at scaffold_315:336061..341926+ (Clytia hemisphaerica)
attatttttaaagacagcATATTTTGCAATACACCTTAAATACGATTTAT
TGAAatcttctttttgttccttttaGACGTAAAATATTTGCACACGGGAC
TTCGAAATGTAAGTAAAGTTATTATGTTAAATGTTACCCGCCTAGATTAA
CgaagtttttttattgttttcaagaTATTTGCCTTGATGACCAAAAGGCT
GCAAATtgcaaaataatgttttctctATTATTATTCCAGCGATTAAAAGA
GAATATCACAAAAGCTTCACCTTCACTCGGACGTGATGCATCTTATACAA
AATCTGTAAGTCTTTAAATATTCTTCTTTTCTTTGCCACCAGCCCAAGGA
CTCACCTCTAGATTTTTAAGTTGTCTAAGCTTTAATTATGATATGATTTT
GCTATAATTGTAGTAGTGCTGTTGTTATAGAACATGTCAACATGTCAACT
CGAtactctctgaaattaattcttttgtAAACTACAATGCCTTATACCGG
GCGAACCCATGTCATGTGTGATAAGGGGTGTGGAACCTCAAGAAACCTGT
CTGTAACTGTACACTGTTCGGGGACGTGCCCTACCCAGATGCCATAAAAC
TTTTGCATAATGATGAGATAAATAATATCTAGACCGCTCAATACAGTATG
TGTTTTTGTTCAGTCTTTAATAGATCGGCTACCAGCTTACTTGACTGTCC
AATTCGTCCGAttttattataaagaaaaagaaaacgtcAATGCCAAAGTA
TTAAAGGTATGTACTGAAgctatatttttgaaaaattttttttccatgta
ATTCAAGTTGAATTTGATAGAATCATGTTTCATAAAAATGTTACTGTTAT
GGAAAGCTTATTATCTAAACATTTGTATAATCTTTCAGGATGTCAAATTC
CCAATGACTTTGGATGTGTTCGATCTATGTTCATCAGATCTGCAAAATAA
ACTTCAACCCATGCGAGATCGTTTCAAGGCAGAAGACGAAAAGAACGTCC
TCAAAGTATGCGAGACTGAAAAGCATTCTTTTTAAGGACTAGCTCTATTA
CATcattgtgtcacagacccggtggaaaaatatGCTTCATTCTAATCCGG
ACTTAGAAAGTCACTATATTTTAGCTGCAAACAATAGCATTCAAATCATC
TTCCATTAGAAATATGCGATTTCCTCTCCATAAATTTTTGTATAAGTTTT
TTGTGTGCTCACAACAATACCATACCTTGCTTTGGCCAAGTAGGgcattt
gaaaataattttttgtcaaaaatttcttACTTGTATATTATCTTACTTGT
CTTACTTAGTATCGCCATGTAAATAATAGAGTAAATTATTGTTAACTctt
ttcatcattttgattCGAATGCTATTTATTGTTTTTCTTCTCTCAGAAAG
TGGAAGCAGCGAAAGCAGGAGGCAAGCCAATGGAGGTGGacgagaagaaa
aaagaaatcccTTATTCCTTCACTGAAGGTTTGTTCGGATCTTCCTTTTC
GGACaaacctcggaggtcctttaaattaacctttgttcttTGTTCGTCTT
TTatcagcttttctcaggattggtcCATTAGTTTTTAGTGACGCAAAATG
ACAGTACCCAAGAGtccgatattatatttatatcATGATTGGAAAGAGCT
ATGAACTTGTTATACTGTTTTAGTCTCGTTTCTTACTATTGTCGCCATTC
TTTcctattttctttttacatcaatcttcaggtaggtaaATTCAGCAAGT
AGCTGAAGTTAACAATGTTAATTCTACCTTTTTCATTTTACAGTATATAA
ctttataaatttctttcttttgtgcATTTCGAGGGTGAAtcttattgttt
tgttttcaattatcaGACGTTGGTAGCAACAACAGTGGATATTACGAATT
AAAAGCAGTACTCACACATNATCCGGACTTAGAAAGTCACTATATTTTAG
CTGCAAACAATAGCATTCAAATCATCTTCCATTAGAAATATGCGATTTCC
TCTCCATAAATTCTCAGCGGGTCATTGAGACAGTTGTTCTTCTGTATAAG
TTTTTTGTGTGCTCACAACAACACCATACCTTGTTTTGGCCAAGTAGGgc
atttgaaaataattttttgtcaaatatctCTTACTTGTATATTATCTTAC
TTGTCTTACTTAGTATCGCCATGTAAATAATAGAGTAAATTATTGTTAAC
TcttttcatcattttgattCGAATGCTATTTATTGTTTTTCTTCTCTCAG
AAAGTGGAAGCAGCGAAAGCAGGAGGCAAGCCAATGGAGGTGGacgagaa
gaaaaaagaaatcccTTATTCCTTCACTGAAGGTTTGTTCGGATCTTCCT
TTTCGGACaaacctcggaggtcctttaaattaacctttgttcttTGTTCG
TCTTTTatcagcttttctcaggattggtcCATTAGTTTTTAGTGACGCAA
AATGACAGTACCCAAGAGtccgatattatatttatatcATGATTGGAAAG
AGCTATGAACTTGTTATACTGTTTTAGTCTCGTTTCTTACTATTGTCGCC
ATTCTTTcctattttctttttacatcaatcttcaggtaggtaaATTCAGC
AAGTAGCTGAAGTTAACAATGTTAATTCTACCTTTTTCATTTTACAGTAT
ATAActttataaatttctttcttttgtgcATTTCGAGGGTGAAtcttatt
gttttgttttcaattatcaGACGTTGGTAGCAACAACAGTGGATATTACG
AATTAAAAGCAGTACTCACACATAAAGGTCGTTCATCCACATCTGGTCAT
TACGTCGGATGGGTCCGCATCGGTGGAGGTGAGGGTTTCCTTTAATGACC
TTATCATTCGTAAAAGGCTTTTGCTATACCCtatctaagttttttaaatt
aaaaaagttgTTGAAAATTTCGTAAGAGCCCTTATATAACTATGGTTTCA
TGTGACTTTGCACCAATTACAAATTAAGTAGAAAACTAAAATAAGGGCTT
CTTCTAAActctttgaaaaaactttcgtcATAGATAAATGGGTGAAGTGC
GACGATGACACAGTATCACCAATACTTGAGGCTGACGTCCTTAAACTTTC
TGGTGGAGGTAATGCCATCTTCTTTTNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagcggttttttgagattt
tctcgagattttctcattagttttttgcgattttttgcacatagatgcac
attagtactgccgaaaaggtgtcgaaaaccgaaAATCTGtgatgaaataa
tgaaaactgaaaactaaatgttttttttactttagttttaattttctctg
aatgattgattaaagtgtcgatattatttttctttcgccgttaaacatcg
atgcgtttcttaattgctttctccgttccaatagatatataaatagaaat
ttaaaattatacattacttccattaaattctaattattcgttttataaat
aggtaggtccattaaagtattacttgtctttttcttttttcttaattGGC
ATGCGGTGAAAACATTTTATACTTATTTACACGTTGATTTTGTAAGGCAT
ACCACAGCTTTGGCTCCGAATTCGTTTTCACTCGTTTCAAGTCGACATTT
CATAGTCGATATATTATTTTGATAGCACAGTCAAAACGGCCTGGCATAAA
CATCTTTCATATTTCAAATTAGTAAGCTACTCAGTGTCGAATTTACGATA
CGATACGATATGATATGTGATCTAgtgttaaatttcttttttttgttgat
cGCTTATCCCACTTCATTTTGACGCTATGACCTCGTTTCAAATCAGAATT
TAGTACAAAAATGCTTTAGAAGATAATCAAGTTCCTAGAGATGATCTAAT
ACTTTCAGCGTTGTGAatctaaatatcaaaatatatctATTGTAGAAGGA
GAGTACCTAAGGATTAAAAAACTTACCATTCTGCTGAAATTCTGGGAAAA
AAAGCTGCAAAAGTCCTAATTTTTTGCACTTACTTTCTGGTTTCGTTTCT
TTAATCCTTGCTTTCTCTTACTTTTTCCTACTTTTGATATCTCGCAGGCT
TGATTTTAAGTAGCAGAATATATTTTGCAACAAATTATTTCCTTTTAAGG
TGATTGGCATTGTGCTTATGTTCTGCTTTACGGACCAAAGGTGTTGAAAG
TTGACGAAGAATAAATTGGATTTGAGGATGATTCTCAAGAACCCAACACG
CAAAGGGaagttagaattttttttgatgttttttttagttttttgtttgt
tttgtgtaTGAATTTgctaaaatatgaaatttcactTTACGATAGTTCAA
TTACCTGATTCAAGTTTTTTTTCCTGGGTGGGAGTGACAAAATTTAGAAG
AAGTGGTCATTTTCCTAATAGATCATCTCATACTgcatcttatcggagtt
ttttgatttttctactCCGATAAGGTATATTATTTCCTTGGTTCTGAGTA
ATTATATTTCctgatttaattttgaaaaactttcaaatttgttACCGTTA
AATAATTAGCTCTTCCATATCATGCTGAACAGAAATTGATTACTGGAAGG
GTTGTTCTaaattattcttcatttttgtttatCGAAGAAAAGCATACTTT
AGTTTtgtaaacagaaaagaaaacaCTCTTCAGTTCATCGTTATTTTCAC
ATCAGGCAAACTACTTTAATATTTCCTTCTTTGAATTTCACTGCTTGTTT
ACATTCGGAAGAGAGCGGACCTCTTAGTGCAATatgttaacttttttttg
atattGAGGGATATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037143XLOC_037143Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058968-exon-scaffold_315-1491911889:336061..336168TCONS_00058968-exon-scaffold_315-1491911889:336061..336168Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1510915933:336061..336168TCONS_00058968-exon-scaffold_315-1510915933:336061..336168Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1575043694:336061..336168TCONS_00058968-exon-scaffold_315-1575043694:336061..336168Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1491911889:336300..336365TCONS_00058968-exon-scaffold_315-1491911889:336300..336365Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1510915933:336300..336365TCONS_00058968-exon-scaffold_315-1510915933:336300..336365Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1575043694:336300..336365TCONS_00058968-exon-scaffold_315-1575043694:336300..336365Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1491911889:336724..336816TCONS_00058968-exon-scaffold_315-1491911889:336724..336816Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1510915933:336724..336816TCONS_00058968-exon-scaffold_315-1510915933:336724..336816Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1575043694:336724..336816TCONS_00058968-exon-scaffold_315-1575043694:336724..336816Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1491911889:336949..337065TCONS_00058968-exon-scaffold_315-1491911889:336949..337065Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1510915933:336949..337065TCONS_00058968-exon-scaffold_315-1510915933:336949..337065Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1575043694:336949..337065TCONS_00058968-exon-scaffold_315-1575043694:336949..337065Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1491911889:337457..337538TCONS_00058968-exon-scaffold_315-1491911889:337457..337538Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1510915933:337457..337538TCONS_00058968-exon-scaffold_315-1510915933:337457..337538Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1575043694:337457..337538TCONS_00058968-exon-scaffold_315-1575043694:337457..337538Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1491911889:338781..338888TCONS_00058968-exon-scaffold_315-1491911889:338781..338888Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1510915933:338781..338888TCONS_00058968-exon-scaffold_315-1510915933:338781..338888Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1575043694:338781..338888TCONS_00058968-exon-scaffold_315-1575043694:338781..338888Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1491911889:339094..339168TCONS_00058968-exon-scaffold_315-1491911889:339094..339168Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1510915933:339094..339168TCONS_00058968-exon-scaffold_315-1510915933:339094..339168Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1575043694:339094..339168TCONS_00058968-exon-scaffold_315-1575043694:339094..339168Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1491911889:341260..341926TCONS_00058968-exon-scaffold_315-1491911889:341260..341926Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1510915933:341260..341926TCONS_00058968-exon-scaffold_315-1510915933:341260..341926Clytia hemisphaericaexon
TCONS_00058968-exon-scaffold_315-1575043694:341260..341926TCONS_00058968-exon-scaffold_315-1575043694:341260..341926Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_315supercontigscaffold_315:336061..341926 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.44988	0.761775	0.993968	2.17799	0.0918358	0.112673	0.313637	0.27465	0.270785	0.519981	0.302683	0.436423	0.301954	0.350017	0.226896	0.29548	0.200825	0.231893	0.0390481	0.0785904	0.659518	0.450291	0.976462	0.787778	0.318744	0.00849568	1.20983	0.328798	1.08918	0.555901
Blast
[Close]
BLAST of TCONS_00058968 vs. Swiss-Prot (Human)
Match: UBP14 (Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14 PE=1 SV=3)

HSP 1 Score: 256.914 bits (655), Expect = 4.375e-79
Identity = 123/212 (58.02%), Postives = 162/212 (76.42%), Query Frame = 1 
Query:   76 DVKYLHTGLRNRLKENITKASPSLGRDASYTKSSLIDRLPAYLTVQFVRFYYKEKENVNAKVLKDVKFPMTLDVFDLCSSDLQNKLQPMRDRFKAEDEKNVLKKVEAAKAGGKPMEVDEKKKEIPYSFTEDVGSNNSGYYELKAVLTHKGRSSTSGHYVGWVRIGGDKWVKCDDDTVSPILEADVLKLSGGGDWHCAYVLLYGPKVLKVDEE 711
            +VKYL TGL+ RL+E ITK SP+L R+A Y KSS I RLPAYLT+Q VRF+YKEKE+VNAKVLKDVKFP+ LD+++LC+ +LQ K+   R +FK  ++K V ++   +     P +  E K E P+SF +D+GSNN GYY+L+AVLTH+GRSS+SGHYV WV+   D+W+K DDD VS +   D+L+LSGGGDWH AYVLLYGP+ +++ EE
Sbjct:  282 EVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQK--EVKYE-PFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRVEIMEE 490
The following BLAST results are available for this feature:
BLAST of TCONS_00058968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBP144.375e-7958.02Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo s... [more]
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