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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058966 ID=TCONS_00058966|Name=TCONS_00058966|organism=Clytia hemisphaerica|type=transcript|length=2870bpRun BLAST on NCBI protein sequence of TCONS_00058966-protein >TCONS_00058966-protein ID=TCONS_00058966-protein|Name=TCONS_00058966-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp MYALSGVPPERQKIMAKGKALKPNTWDGFALKNGMMLLMMGSADALPEAPRun BLAST on NCBI transcript from alignment at scaffold_315:332444..347234+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058966 ID=TCONS_00058966|Name=TCONS_00058966|organism=Clytia hemisphaerica|type=transcript|length=14791bp|location=Sequence derived from alignment at scaffold_315:332444..347234+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_315:332444..347234+ >TCONS_00058966 ID=TCONS_00058966|Name=TCONS_00058966|organism=Clytia hemisphaerica|type=CDS|length=3096bp|location=Sequence derived from alignment at scaffold_315:332444..347234+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058966 vs. Swiss-Prot (Human)
Match: UBP14 (Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14 PE=1 SV=3) HSP 1 Score: 256.529 bits (654), Expect = 1.098e-74 Identity = 123/212 (58.02%), Postives = 162/212 (76.42%), Query Frame = 1
Query: 2140 DVKYLHTGLRNRLKENITKASPSLGRDASYTKSSLIDRLPAYLTVQFVRFYYKEKENVNAKVLKDVKFPMTLDVFDLCSSDLQNKLQPMRDRFKAEDEKNVLKKVEAAKAGGKPMEVDEKKKEIPYSFTEDVGSNNSGYYELKAVLTHKGRSSTSGHYVGWVRIGGDKWVKCDDDTVSPILEADVLKLSGGGDWHCAYVLLYGPKVLKVDEE 2775
+VKYL TGL+ RL+E ITK SP+L R+A Y KSS I RLPAYLT+Q VRF+YKEKE+VNAKVLKDVKFP+ LD+++LC+ +LQ K+ R +FK ++K V ++ + P + E K E P+SF +D+GSNN GYY+L+AVLTH+GRSS+SGHYV WV+ D+W+K DDD VS + D+L+LSGGGDWH AYVLLYGP+ +++ EE
Sbjct: 282 EVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQK--EVKYE-PFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRVEIMEE 490 HSP 2 Score: 180.259 bits (456), Expect = 3.656e-48 Identity = 96/176 (54.55%), Postives = 121/176 (68.75%), Query Frame = 2
Query: 80 VNVKWGKQKFEGVELNTDEAPEVFHAQMYALSGVPPERQKIMAKGKALKPNTWDGFALKNGMMLLMMGSADALPEAPKTKTQFIEDMSDAQVAKAXXXXXXXXXXXXXCYMNATIQCLKTVPELVDGLKSYSGQISIGGVLSDTASAITTXXXXXXXXXXXXNTDSLPPIMFLQVF 607
V VKWGK+KFEGVELNTDE P VF AQ++AL+GV P RQK+M KG LK + W +KNGM LLMMGSADALPE P KT F+EDM++ Q+A A LP GL NLGNTCYMNAT+QC+++VPEL D LK Y+G + G ++ ++ T+ + S+PPI+ LQ
Sbjct: 6 VTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDDDWGNIKIKNGMTLLMMGSADALPEEPSAKTVFVEDMTEEQLASAMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMA--SAQYITAALRDLFDSMDKTSSSIPPIILLQFL 179 The following BLAST results are available for this feature:
BLAST of TCONS_00058966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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