TCONS_00058962 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058962
Unique NameTCONS_00058962
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1792

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058962 ID=TCONS_00058962|Name=TCONS_00058962|organism=Clytia hemisphaerica|type=transcript|length=1792bp
tttgttatGTCTGGGTGAACTTTTATTCCGAACCTCAGAGTAGTTTGACT
AACTGACACTACCCAAAAAATCATATGAAAAAAGAATTGCAGGGGCTTCT
TCTCTAGAACTTGCTGTCTTTAAGGTACTTCCAGCTCTcttcctggaaaa
atataatatctaatcttttttttttttaatcttaaggttattttgaaaaa
gtaactcaatttctttattttctagtTTGGAGAAAAGAATTCATGATGTC
TTACATAAAGCATTCTGGGATGTATTAGAAGAAGAAGTTAAAAGCGAACC
GCCTGAATTTAAAAATGCATTCAATCTTTTAATGGAAATGAAAATGCTTA
TTTTGGAAATAATTCCGAAAAGTAAGGCTGCAAGTGCAATGCGTACAGAG
ATAGAAGAAACCCTTGACGAGGAACTTATAAAACAACAGATTGATCACAA
TGCATTTGATATTGTATCTTGTGCCTCATTCATACTTTCCACACTTTCGA
AAATTTGTGCTCCAGTTCGGGATGCAAGAATTAAAGCACTTAAAGCAAAG
ACAGACCTTGTACCTCTACTAAGagGGACATTTGAATTAATCAACCTGAT
GAAAATCGACATCGCGAATTATGAAATCAAATCTATAAAACCCATCCTTA
TGAAACAAGCAGTAAAATATGAAGACGAAAAGTTCAATGAATTCCTAAAA
GAAAACAAAGatggtttaaatttgacaaaaatttggctgaaaaatgcATT
GGATATTATTAACTCAATCAGGAGTCCATCTTCCCAAAACAAAGTTACCC
CAGGGGTTGTCATAACAAACGCTTACTTGTCATTGTTATTTCCAACCTCT
GAACTCTGCCCTGAGACTTTATTTATGGATGAACTTCGTTTGAAACAAAT
TTCTGGACAGTTTGAAGTCTTGATCAATACAGTGTCTTCGTTGACgtatt
gtttacattttttgccgCCACACCTCTCCACTGATGAAGACTTCATTATT
CATTTAAAGAAGACTATTTTTATACTCATTCAAGGATCTAAATgGGATGA
AACTTTGGTTGAAAGTATTTTCTTGCAAATACAGACAGAGACAGAAAAAG
AATGTAGCAAGCGTGAGATTGAATTGAAGACGCCAGCCCAGTGGGATATT
TTGAGGAACCAACTGAAAGGTTTACTAACAAACGACAAACAAGAACCTAA
TCAACTCAAAACTCTCATCAAGTCAAGAATACGGGACTATGTTCtacttt
cgatgacgtcacagACGCTTCAAACGCCGATGTTTACAGTTTTAGCGCCC
ATTCAAAACGAACTTAAAGAATTGAGCACTCGTTTCGTCCGAGTTGTCAA
TCATAACAAACAAGTGCATTGTGCGAGATATATGGACATTGTTGAGGAAC
TTCTCGGAATTAAATCGGACGATGATTCCGATTCAGAATCCGAAaaggaa
atcggggaaaattCGACTGATAAAACGGAATAACCTGTAAATTGAGCTTT
GAAAAGCTCTCTgcataaattttgaatttttattacaGTTTTTTAgatta
taaaaatctttttttagagAGCCTACTTAGTTAGTAgtgatatattttat
ttatatcGGAATATTTTATTGTCAAGTATTCGTTGTTGTTTTATATAATG
TGTCATGTTTATTGTAGTTTTAAtggatttatttttgtgtttttttgtat
TGATTGTAAATAATACCTTGTAATTCTATTGAAGTATATTTCGAAAGATA
TACCCCGTAAAAATGAACAGCgctataattaccattttcaca
Run BLAST on NCBI

transcript from alignment at scaffold_315:218554..221932+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058962 ID=TCONS_00058962|Name=TCONS_00058962|organism=Clytia hemisphaerica|type=transcript|length=3379bp|location=Sequence derived from alignment at scaffold_315:218554..221932+ (Clytia hemisphaerica)
tttgttatGTCTGGGTGAACTTTTATTCCGAACCTCAGAGTAGTTTGACT
AACTGACACTACCCAAAAAATCATATGAAAAAAGAATTGCAGGGGCTTCT
TCTCTAGAACTTGCTGTCTTTAAGGTACTTCCAGCTCTcttcctggaaaa
atataatatctaatcttttttttttttaatcttaaggttattttgaaaaa
gtaactcaatttctttattttctagtTTGGAGAAAAGAATTCATGATGTC
TTACATAAAGCATTCTGGGATGTATTAGAAGAAGAAGTTAAAAGCGAACC
GCCTGAATTTAAAAATGCATTCAATCTTTTAATGGAAATGAAAATGGTAA
GTTAttcttaaaattaaattttaattttatttgtgACTCACTAGGAGTTG
AGCTATTTTTCACTTCTAGATTTCTATGTTAAAATTTGGAACTTGCAAGG
AAAAGTTATAGCCAAAATATCTATATTATTAGAACTAATCTTATATTATG
CTAGGtaaaaaatcagtgtttttcagaaaaaaccTGTTTAAAGGTGTGGT
CTGATCAGattcttttgaaaagatttaTTATTGAAAACTGTatagtataa
ttttaaattcctGAACTTTTTTAGGCTTTATTTCTGTTATCGATAAGCAA
ATTAtcagtataatttttttttagaaattactTCTGAAATTGTCTAGctt
gttttaaattctttttattatttcatcAGCTTATTTTGGAAATAATTCCG
AAAAGTAAGGCTGCAAGTGCAATGCGTACAGAGATAGAAGAAACCCTTGA
CGAGGAACTTATAAAACAACAGATTGATCACAATGCATTTGATATTGTAT
CTTGTGCCTCATTCATACTTTCCACACTTTCGAAAATTTGTGCTCCAGTT
CGGGATGCAAGAATTAAAGCACTTAAAGCAAAGACAGACCTTGTACCTCT
ACTAAGGTAGGCagttatataatatttttttaattcattatcaaatattt
taaattgtttgaagaattgaaaatttttgctcaaaatgttTGTCACTCCT
TTTCCTTTTCCTCTGAttcatttaactttttttagagGGACATTTGAATT
AATCAACCTGATGAAAATCGACATCGCGAATTATGAAATCAAATCTATAA
AACCCATCCTTATGAAACAAGCAGTAAAATATGAAGACGAAAAGTTCAAT
GAATTCCTAAAAGAAAACAAAGGTTAGTTAGATGAGATTTCTTTTATGGA
GGGTAttcagcatcaaaataattttctgttttCATTTACTCGCCTTCTAG
AGTTCTTATTGctaaattgtttttactttttttctttttagatggtttaa
atttgacaaaaatttggctgaaaaatgcATTGGATATTATTAACTCAATC
AGGAGTCCATCTTCCCAAAACAAAGTTACCCCAGGGGTTGTCATAACAAA
CGCTTACTTGTCATTGTTATTTCCAACCTCTGAACTCTGCCCTGAGGTTA
GTTTCATGAATATATCTTTCTATTTTTTGCTATAATCaatttaaataata
aattgattaaaaatataatcaattaaaaaaattcagacgTTATTGTCTaa
agtttgtttatatttaaaaaaattgtttatgacATGAAGTTAATGAAtgc
tttaaatttttattttcgattCAGACTTTATTTATGGATGAACTTCGTTT
GAAACAAATTTCTGGACAGTTTGAAGTCTTGATCAATACAGTGTCTTCGT
TGACgtattgtttacattttttgccgCCACACCTCTCCACTGATGAAGAC
TTCATTATTCATTTAAAGAAGACTATTTTTATACTCATTCAAGGATCTAA
ATggtaaatatacaaaatattcATTATTGAATGttacattcaaaatattt
tgaatccTTTCTATAGAAATAGTAATGAATAGGCTAAAATATTCATTCTC
CCAATATTGAGAGGTCAAACATTGAAATTCAAAGTGATTCCATGTAATTA
AGCTCCCGTTATATAGTTATAATGACCACGTAAGTACAATTAAGATAGCC
AGGATATACCTGTCGGAAATTAACTCGTGTTTTCAATGTCGTTGATACCT
TTTTGATTGTCCCGACATTTCCTGTACATCTATGAAAAAAGCAATCATTA
ATTCGATAGTTAACTATTGAAAAATCTAGCAAAGGTTTGATACCTGTTTG
TAAACaataaatcttttgttttgaaataaataaaaatgagctAATGAGTC
TCGGTAACTTCCGTCAAGCTCCGTAACATTTTCTTCGTGGATTCATAAGG
TTTTTGGATAGGAATTAGGATTGAAAGTAATAACTAGTCTGTACATCCAG
TTTGAGTTAATTTTAATGTTACAATCATATCGTTTTTTTTCTTAGGGATG
AAACTTTGGTTGAAAGTATTTTCTTGCAAATACAGACAGAGACAGAAAAA
GAATGTAGCAAGCGTGAGATTGAATTGAAGACGCCAGCCCAGTGGGATAT
TTTGAGGAACCAACTGAAAGGTTTACTAACAAACGACAAACAAGAACCTA
ATCAACTCAAAACTCTCATCAGTAAGTTCCAAATAAGCTATATTGATTGc
tcattttgattttcttgcgGAATTGATAtaattcatttttgttttcatat
tttttattttaatccaAGACGTtatttaaaaatagaaagattTCGATAAA
CTTTATCGTGACTAATAATACCCCTCGAAGTTAAACGAAACaatcatttt
ttaaagatatttactGTTAATCAAATAAAGTCATAAGATGTCCTCCTTTA
CTTTTAGAGTCAAGAATACGGGACTATGTTCtactttcgatgacgtcaca
gACGCTTCAAACGCCGATGTTTACAGTTTTAGCGCCCATTCAAAACGAAC
TTAAAGAATTGAGCACTCGTTTCGTCCGAGTTGTCAATCATAACAAACAA
GTGCATTGTGCGAGATATATGGACATTGTTGAGGAACTTCTCGGAATTAA
ATCGGACGATGATTCCGATTCAGAATCCGAAaaggaaatcggggaaaatt
CGACTGATAAAACGGAATAACCTGTAAATTGAGCTTTGAAAAGCTCTCTg
cataaattttgaatttttattacaGTTTTTTAgattataaaaatcttttt
ttagagAGCCTACTTAGTTAGTAgtgatatattttatttatatcGGAATA
TTTTATTGTCAAGTATTCGTTGTTGTTTTATATAATGTGTCATGTTTATT
GTAGTTTTAAtggatttatttttgtgtttttttgtatTGATTGTAAATAA
TACCTTGTAATTCTATTGAAGTATATTTCGAAAGATATACCCCGTAAAAA
TGAACAGCgctataattaccattttcaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037141XLOC_037141Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058962-exon-scaffold_315-1491911889:218554..218899TCONS_00058962-exon-scaffold_315-1491911889:218554..218899Clytia hemisphaericaexon
TCONS_00058962-exon-scaffold_315-1510915933:218554..218899TCONS_00058962-exon-scaffold_315-1510915933:218554..218899Clytia hemisphaericaexon
TCONS_00058962-exon-scaffold_315-1575043694:218554..218899TCONS_00058962-exon-scaffold_315-1575043694:218554..218899Clytia hemisphaericaexon
TCONS_00058962-exon-scaffold_315-1491911889:219283..219509TCONS_00058962-exon-scaffold_315-1491911889:219283..219509Clytia hemisphaericaexon
TCONS_00058962-exon-scaffold_315-1510915933:219283..219509TCONS_00058962-exon-scaffold_315-1510915933:219283..219509Clytia hemisphaericaexon
TCONS_00058962-exon-scaffold_315-1575043694:219283..219509TCONS_00058962-exon-scaffold_315-1575043694:219283..219509Clytia hemisphaericaexon
TCONS_00058962-exon-scaffold_315-1491911889:219639..219775TCONS_00058962-exon-scaffold_315-1491911889:219639..219775Clytia hemisphaericaexon
TCONS_00058962-exon-scaffold_315-1510915933:219639..219775TCONS_00058962-exon-scaffold_315-1510915933:219639..219775Clytia hemisphaericaexon
TCONS_00058962-exon-scaffold_315-1575043694:219639..219775TCONS_00058962-exon-scaffold_315-1575043694:219639..219775Clytia hemisphaericaexon
TCONS_00058962-exon-scaffold_315-1491911889:219895..220049TCONS_00058962-exon-scaffold_315-1491911889:219895..220049Clytia hemisphaericaexon
TCONS_00058962-exon-scaffold_315-1510915933:219895..220049TCONS_00058962-exon-scaffold_315-1510915933:219895..220049Clytia hemisphaericaexon
TCONS_00058962-exon-scaffold_315-1575043694:219895..220049TCONS_00058962-exon-scaffold_315-1575043694:219895..220049Clytia hemisphaericaexon
TCONS_00058962-exon-scaffold_315-1491911889:220228..220406TCONS_00058962-exon-scaffold_315-1491911889:220228..220406Clytia hemisphaericaexon
TCONS_00058962-exon-scaffold_315-1510915933:220228..220406TCONS_00058962-exon-scaffold_315-1510915933:220228..220406Clytia hemisphaericaexon
TCONS_00058962-exon-scaffold_315-1575043694:220228..220406TCONS_00058962-exon-scaffold_315-1575043694:220228..220406Clytia hemisphaericaexon
TCONS_00058962-exon-scaffold_315-1491911889:220949..221124TCONS_00058962-exon-scaffold_315-1491911889:220949..221124Clytia hemisphaericaexon
TCONS_00058962-exon-scaffold_315-1510915933:220949..221124TCONS_00058962-exon-scaffold_315-1510915933:220949..221124Clytia hemisphaericaexon
TCONS_00058962-exon-scaffold_315-1575043694:220949..221124TCONS_00058962-exon-scaffold_315-1575043694:220949..221124Clytia hemisphaericaexon
TCONS_00058962-exon-scaffold_315-1491911889:221361..221932TCONS_00058962-exon-scaffold_315-1491911889:221361..221932Clytia hemisphaericaexon
TCONS_00058962-exon-scaffold_315-1510915933:221361..221932TCONS_00058962-exon-scaffold_315-1510915933:221361..221932Clytia hemisphaericaexon
TCONS_00058962-exon-scaffold_315-1575043694:221361..221932TCONS_00058962-exon-scaffold_315-1575043694:221361..221932Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_315supercontigscaffold_315:218554..221932 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.74046	1.66074	2.10918	0.79516	48.3959	31.2195	0.564696	1.87426	0	1.6048	38.971	30.8842	0.756581	0.41526	0.155177	0.040859	0	0	8.89366	18.7374	4.83739	23.6711	3.04526	2.52154	20.0656	17.8579	16.8235	29.6313	13.6349	9.31183
Blast
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BLAST of TCONS_00058962 vs. Swiss-Prot (Human)
Match: T11L2 (T-complex protein 11-like protein 2 OS=Homo sapiens GN=TCP11L2 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 4.772e-52
Identity = 139/419 (33.17%), Postives = 241/419 (57.52%), Query Frame = 2 
Query:  224 SLEKRIHDVLHKAFWDVLEEEVKSEPPEFKNAFNXXXXXXXXXXXXXPKSKAASAMRXXXXXXXXXXXXKQQIDHNAFDIVSCASFILSTLSKICAPVRDARIKALKAKTDLVPLLRGTFELINLMKIDIANYEIKSIKPILMKQAVKYEDEKFNEFLKENKDGLNLTKIWLKNALD-----IINSIRSPSSQN----KVTPGVVITNAYLSLL---FPTSELCPETLFMDELRLKQIS---GQFEVLI-------NTVSSLTYCLHFLPPHLSTDEDFIIHLKKTIFILIQGSKWDETLVESIFLQIQTETEKECSKREIELKTPAQWDILRNQLKGLLTNDKQEPNQLKTLIKSRIRDYV--LLSMTS-QTLQTPMFTVLAPIQNELKELSTRFVRVVNHNKQVHCARYMDIVEELL 1405
            SL  R+  ++H+AFWDVL+ E+ ++PPEF++A  L  E++ ++L  +  +   + +R +I E LD +LI+QQ +H+A DI   A++++ST+ K+CAPVRD  I+ LKA  ++V +LR  F +++LM++D+AN+ I S++P L +Q V+YE  KF E L+E    L+ T  W+K +++     +  S  +P ++N     ++P +V+ N+YL LL   +   EL PETL  D  RL++++    Q +++        N V ++T  L    P L++       L +   +L++G   +   ++ +   I  +T  E +K  +E   P     ++  L G  ++ ++E N + +LI  RI+ Y+  LL + S Q    PM   LA IQ EL+ L +++  +VN NKQV+   Y +I+ +LL
Sbjct:   98 SLAGRVKHIVHQAFWDVLDSELNADPPEFEHAIKLFEEIREILLSFL--TPGGNRLRNQICEVLDTDLIRQQAEHSAVDIQGLANYVISTMGKLCAPVRDNDIRELKATGNIVEVLRQIFHVLDLMQMDMANFTIMSLRPHLQRQLVEYERTKFQEILEETPSALDQTTEWIKESVNEELFSLSESALTPGAENTSKPSLSPTLVLNNSYLKLLQWDYQKKEL-PETLMTDGARLQELTEKLNQLKIIACLSLITNNMVGAITGGL----PELAS------RLTRISAVLLEGMNKETFNLKEVLNSIGIQTCVEVNKTLMERGLPTLNAEIQANLIGQFSSIEEEDNPIWSLIDKRIKLYMRRLLCLPSPQKCMPPMPGGLAVIQQELEALGSQYANIVNLNKQVYGPFYANILRKLL 503
The following BLAST results are available for this feature:
BLAST of TCONS_00058962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
T11L24.772e-5233.17T-complex protein 11-like protein 2 OS=Homo sapien... [more]
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