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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058956 ID=TCONS_00058956|Name=TCONS_00058956|organism=Clytia hemisphaerica|type=transcript|length=970bp
tttttcaggaaagaagctcacaaaattgattttggatgCAGATCTGAAAC
TCTCCAACAAGTctttatttctattattttaaaactttacaaagatgcta
aatttattaaatttaattgtattaaaattcatttctttgtGAACGATTGA
AAGAAGCTGTTCTTGCTCGTGAAGTTTTCTTGATCCTGTTCTGTAATAAC
TCGTAAGCTTGTTGTATCTCAATGAATTTGTGTTGTGCGTCTTCTTTATC
CGCCCCTCTGTATCGATCAGGGTGCCATTTGACTACTAACTTCTTATAAC
GTTTCCTTATTTCCTCTTCAGATGCAGTCTGATGGACACCAAGAACCTCT
TTGGCGTTTCTTTCACCCGTTGGGTCAAAAGaactaatgacgtcatcata
aaagTTTTTCCAATGGTTGGATTCACCTTCCCGGTTTCCATTCTCTGAAA
TACGTGAAAGTCAAGGAAGATGCGATTGAAATATTGACATATCCTGGCTC
AGTACCGGTTGAATAGTAGAAAAAAACATATGTTGCCAAAGTCACTATAT
AAGGTATGGTAAATTGTCCTTTTTCACGACCAATATGTCCTACTAGATAT
ACACCAATATTGATTCCAAGTGGTACTAACAAAGTCACTAAGATTGTGGG
TGATTCATCAGGGCACGCTAAGCGAGCTAAAGTTCCATAGCAAGCTCCTA
TAAAGACTTGTCCTGAGAAGCGTGAAGTGTTAAATTCAGGTTGTTTTCgg
tgtttcattttcaattttaaaatattaagaaatccTTTTTCGTTATTGGC
ATCGTCCACATATTCAGGGATACGCCAGAAATCACGAATCCATCCTAACC
AGAAGAACCCACCTAGAGTTGACCACCATACAAATGCTTGGTTGTCTCTC
CTAAGATAAATGTGATGTACTCCAAATGTCCCCAAAAACAACCATAGTAA
ATAAGTCACAAACAGACTTT Run BLAST on NCBI transcript from alignment at scaffold_315:173178..174356+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058956 ID=TCONS_00058956|Name=TCONS_00058956|organism=Clytia hemisphaerica|type=transcript|length=1179bp|location=Sequence derived from alignment at scaffold_315:173178..174356+ (Clytia hemisphaerica)
tttttcaggaaagaagctcacaaaattgattttggatgCAGATCTGAAAC
TCTCCAACAAGTctttatttctattattttaaaactttacaaagatgcta
aatttattaaatttaattgtattaaaattcatttctttgtGAACGATTGA
AAGAAGCTGTTCTTGCTCGTGAAGTTTTCTTGATCCTGTTCTGTAATAAC
TCGTAAGCTTGTTGTATCTCAATGAATTTGTGTTGTGCGTCTTCTTTATC
CGCCCCTCTGTATCGATCAGGGTGCCATTTGACTACTAACTTCTTATAAC
GTTTCCTTATTTCCTCTTCAGATGCAGTCTGATGGACACCAAGAACCTCT
TTGGCGTTTCTTTCACCCGTTGGGTCAAAAGaactaatgacgtcatcata
aaagTTTTTCCAATGGTTGGATTCACCTTCCCGGTAAATATTccaaaaag
tttgtttgaaaTCAAGCCACACTGGTGATTTGAAGAAATGAATAATGGAG
TCTGTTAGTTTGATCTTTTCTCCATTCTGATATGTGATTGTGGCGTTGAA
GTAAAAGAAACTTGACCATAAAGCAAACACTAGAACAACACCGATTGCAA
AATTCCTTATTCTTACACTATTACTTTCTTTCTTTGCTTCAGGTTTCCAT
TCTCTGAAATACGTGAAAGTCAAGGAAGATGCGATTGAAATATTGACATA
TCCTGGCTCAGTACCGGTTGAATAGTAGAAAAAAACATATGTTGCCAAAG
TCACTATATAAGGTATGGTAAATTGTCCTTTTTCACGACCAATATGTCCT
ACTAGATATACACCAATATTGATTCCAAGTGGTACTAACAAAGTCACTAA
GATTGTGGGTGATTCATCAGGGCACGCTAAGCGAGCTAAAGTTCCATAGC
AAGCTCCTATAAAGACTTGTCCTGAGAAGCGTGAAGTGTTAAATTCAGGT
TGTTTTCggtgtttcattttcaattttaaaatattaagaaatccTTTTTC
GTTATTGGCATCGTCCACATATTCAGGGATACGCCAGAAATCACGAATCC
ATCCTAACCAGAAGAACCCACCTAGAGTTGACCACCATACAAATGCTTGG
TTGTCTCTCCTAAGATAAATGTGATGTACTCCAAATGTCCCCAAAAACAA
CCATAGTAAATAAGTCACAAACAGACTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058956-exon-scaffold_315-1491911889:173178..173610 | TCONS_00058956-exon-scaffold_315-1491911889:173178..173610 | Clytia hemisphaerica | exon |
| TCONS_00058956-exon-scaffold_315-1510915933:173178..173610 | TCONS_00058956-exon-scaffold_315-1510915933:173178..173610 | Clytia hemisphaerica | exon |
| TCONS_00058956-exon-scaffold_315-1575043694:173178..173610 | TCONS_00058956-exon-scaffold_315-1575043694:173178..173610 | Clytia hemisphaerica | exon |
| TCONS_00058956-exon-scaffold_315-1491911889:173820..174356 | TCONS_00058956-exon-scaffold_315-1491911889:173820..174356 | Clytia hemisphaerica | exon |
| TCONS_00058956-exon-scaffold_315-1510915933:173820..174356 | TCONS_00058956-exon-scaffold_315-1510915933:173820..174356 | Clytia hemisphaerica | exon |
| TCONS_00058956-exon-scaffold_315-1575043694:173820..174356 | TCONS_00058956-exon-scaffold_315-1575043694:173820..174356 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_315 | supercontig | scaffold_315:173178..174356 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007829 | TM2 |
Blast
The following BLAST results are available for this feature:
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