TCONS_00058949 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058949
Unique NameTCONS_00058949
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058949 ID=TCONS_00058949|Name=TCONS_00058949|organism=Clytia hemisphaerica|type=transcript|length=299bp
aactGGAATGTGATACTGATAGCAGGAAAGACAATACAATCTTAAATAGA
AGGCACGATGAAAAAACTCACCTAAGTATGCTAAATAGATCGGCTTCCCT
TCGACTTCACCGGAATATTGTCTGATTTCGTCTTTAGTGAATATCCTTTC
TCCAGTACTTGGTTGTTGTGCAGCTGGCTTCTTGAAAAGCCCCAGAATGT
TGATCAAGGTATGCAATACACTATCGTCATTAGTGCTCAATACCAGGACA
TCTTCGTtcgaattttattttgtttgttttacctTCTTCCATTTCTGAT
Run BLAST on NCBI

transcript from alignment at scaffold_315:86866..87274+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058949 ID=TCONS_00058949|Name=TCONS_00058949|organism=Clytia hemisphaerica|type=transcript|length=409bp|location=Sequence derived from alignment at scaffold_315:86866..87274+ (Clytia hemisphaerica)
aactGGAATGTGATACTGATAGCAGGAAAGACAATACAATCTTAAATAGA
AGGCACGATGAAAAAACTCACCTAAGTATGCTAAATAGATCGGCTTCCCT
TCGACTTCACCGGAATATTGTCTGATTTCGTCTTTAGTGAATATCCTTTC
TCCAGTACTTGGTTGTTGTGCAGCTGGCTTCTTGAAAAGCCCCAGAATGT
TGATCAAGGTATGCAATACACTATCGTCATTAGTGCTATGCATATGGAAT
GAATTAAATACTCTTGACGAATAACCATACTTCAATTCGAGAGGTACTAT
AACGGCACATGCAACCACTACAACACTTGTGTAAGCTAAAAACTCACCAA
TACCAGGACATCTTCGTtcgaattttattttgtttgttttacctTCTTCC
ATTTCTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037135XLOC_037135Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058949-exon-scaffold_315-1491911889:86866..87102TCONS_00058949-exon-scaffold_315-1491911889:86866..87102Clytia hemisphaericaexon
TCONS_00058949-exon-scaffold_315-1510915933:86866..87102TCONS_00058949-exon-scaffold_315-1510915933:86866..87102Clytia hemisphaericaexon
TCONS_00058949-exon-scaffold_315-1575043694:86866..87102TCONS_00058949-exon-scaffold_315-1575043694:86866..87102Clytia hemisphaericaexon
TCONS_00058949-exon-scaffold_315-1491911889:87213..87274TCONS_00058949-exon-scaffold_315-1491911889:87213..87274Clytia hemisphaericaexon
TCONS_00058949-exon-scaffold_315-1510915933:87213..87274TCONS_00058949-exon-scaffold_315-1510915933:87213..87274Clytia hemisphaericaexon
TCONS_00058949-exon-scaffold_315-1575043694:87213..87274TCONS_00058949-exon-scaffold_315-1575043694:87213..87274Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_315supercontigscaffold_315:86866..87274 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.746013	1.25437	0	0.820523	0	0.560856	0	0	0	0	0	0	1.1092	0	1.66119	0.860965	0.518261	1.006	0	0	0	0	0	0	1.36688	0.98693	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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