TCONS_00058945 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058945
Unique NameTCONS_00058945
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length493

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058945 ID=TCONS_00058945|Name=TCONS_00058945|organism=Clytia hemisphaerica|type=transcript|length=493bp
ggcattatgtcgactttgcttctacggtgttttggtgtttttcccgtaca
aagcaaagtagacaacgacatgtcgcctttggtgacgacccgtaCGAGCc
gccccgcaaccgtagccgtaaaATATCTCCGctaatagcgagattatgta
tcgttTGTTGATTTATTTCATGTTATAAATTAgtgtaaataatttttctt
taagaTTATCGCTTATAATGTAGTATGCATTTCAAAAACCAAGTGCGATA
aaatgttcgaatgtttttagTTCTAATGATATAAATCACCGAATTCAAAG
AACTGTTTATCATGAGGGCCACTCCAAACAATGCATCAAACATGCCCTCA
GCTGAAGGTACTCTAAAAACCATTTGAAAAGTGTTCGGAAAATAACAAAC
CACATAGAAAAAGGTGATTAATAATAAAGTCTTAATGCTCTTCAATTTTT
GAATCCTCGACTTTTCTTCTTGGATGTTAATGTTGTTTCCATT
Run BLAST on NCBI

transcript from alignment at scaffold_314:713553..714045

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058945 ID=TCONS_00058945|Name=TCONS_00058945|organism=Clytia hemisphaerica|type=transcript|length=493bp|location=Sequence derived from alignment at scaffold_314:713553..714045 (Clytia hemisphaerica)
AATGGAAACAACATTAACATCCAAGAAGAAAAGTCGAGGATTCAAAAATT
GAAGAGCATTAAGACTTTATTATTAATCACCTTTTTCTATGTGGTTTGTT
ATTTTCCGAACACTTTTCAAATGGTTTTTAGAGTACCTTCAGCTGAGGGC
ATGTTTGATGCATTGTTTGGAGTGGCCCTCATGATAAACAGTTCTTTGAA
TTCGGTGATTTATATCATTAGAActaaaaacattcgaacatttTATCGCA
CTTGGTTTTTGAAATGCATACTACATTATAAGCGATAAtcttaaagaaaa
attatttacacTAATTTATAACATGAAATAAATCAACAaacgatacataa
tctcgctattagCGGAGATATtttacggctacggttgcggggcgGCTCGt
acgggtcgtcaccaaaggcgacatgtcgttgtctactttgctttgtacgg
gaaaaacaccaaaacaccgtagaagcaaagtcgacataatgcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037131XLOC_037131Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058945-exon-scaffold_314-1491911889:713553..714045TCONS_00058945-exon-scaffold_314-1491911889:713553..714045Clytia hemisphaericaexon
TCONS_00058945-exon-scaffold_314-1510915933:713553..714045TCONS_00058945-exon-scaffold_314-1510915933:713553..714045Clytia hemisphaericaexon
TCONS_00058945-exon-scaffold_314-1575043694:713553..714045TCONS_00058945-exon-scaffold_314-1575043694:713553..714045Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:713553..714045 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.249843	0.369245	0.711734	1.12271	0.168464	0.133122	0.160606	0.150358	0.31871	0.260785	0	0.250859	1.3353	1.03537	0.0709346	0.307674	0.281335	0.19323	1.19515	1.66752	0.60778	0.883693	0.286465	0.395962	0	0.359104	0	0.186319	0.138653	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058945 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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